PDB Chemical Component 53S

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 53S

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C6	C5	1.412	1.396
C6	C10	1.416	1.432
C6	C1	1.429	1.409
C5	C8	1.572	1.507
C5	N4	1.346	1.322
C2	O17	1.487	1.429
C20	C21	1.403	1.380
C20	C25	1.400	1.393
C21	C22	1.416	1.384
C22	C26	1.569	1.507
C22	C23	1.405	1.383
C23	C24	1.404	1.380
C24	C25	1.425	1.393
C25	C18	1.413	1.484
C18	C19	1.432	1.393
C18	C17	1.432	1.393
C19	C14	1.410	1.381
C17	C16	1.402	1.385
C16	O17	1.400	1.359
C16	C15	1.404	1.388
C15	C14	1.398	1.382
C14	C12	1.513	1.506
C12	C13	1.551	1.530
C12	C11	1.475	1.473
C11	C10	1.174	1.174
N4	C3	1.360	1.326
C3	N7	1.348	1.383
C3	N2	1.330	1.325
N2	C1	1.339	1.328
C1	N9	1.328	1.382
C2	H2	1.100	1.090
C2	H2A	1.100	1.091
C2	H2B	1.100	1.090
C20	H20	1.080	1.079
C21	H21	1.080	1.081
C26	H26	1.100	1.090
C26	H26A	1.100	1.090
C26	H26B	1.100	1.091
C23	H23	1.080	1.080
C24	H24	1.081	1.080
C19	H19	1.080	1.080
C17	H17	1.080	1.080
C15	H15	1.080	1.080
C12	H12	1.100	1.089
C13	H13	1.100	1.090
C13	H13A	1.100	1.090
C13	H13B	1.100	1.089
C8	H8	1.100	1.090
C8	H8A	1.100	1.090
C8	H8B	1.100	1.090
N7	HN7	1.000	0.970
N7	HN7A	1.000	0.970
N9	HN9	1.000	0.971
N9	HN9A	1.000	0.970

Bond Angles for 53S

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C5	C6	C10	120.4	120.9
C5	C6	C1	119.6	118.2
C6	C5	C8	124.3	120.4
C6	C5	N4	116.9	119.1
C10	C6	C1	120.0	120.9
C6	C10	C11	178.2	180.0
C6	C1	N2	118.1	118.8
C6	C1	N9	121.9	120.7
C8	C5	N4	118.7	120.5
C5	C8	H8	109.5	109.5
C5	C8	H8A	109.5	109.4
C5	C8	H8B	109.5	109.5
C5	N4	C3	123.0	121.1
C2	O17	C16	112.2	117.0
O17	C2	H2	109.5	109.4
O17	C2	H2A	109.5	109.5
O17	C2	H2B	109.4	109.5
C21	C20	C25	117.4	119.8
C20	C21	C22	122.8	120.2
C21	C20	H20	121.3	120.1
C20	C21	H21	118.6	119.9
C20	C25	C24	119.7	119.8
C20	C25	C18	121.9	120.1
C25	C20	H20	121.3	120.1
C21	C22	C26	119.9	119.9
C21	C22	C23	120.3	120.2
C22	C21	H21	118.6	119.9
C26	C22	C23	119.8	119.9
C22	C26	H26	109.5	109.4
C22	C26	H26A	109.5	109.5
C22	C26	H26B	109.5	109.5
C22	C23	C24	116.8	120.2
C22	C23	H23	121.6	119.9
C23	C24	C25	122.9	119.8
C24	C23	H23	121.6	119.9
C23	C24	H24	118.5	120.1
C24	C25	C18	118.3	120.1
C25	C24	H24	118.5	120.1
C25	C18	C19	122.4	120.1
C25	C18	C17	116.7	120.1
C19	C18	C17	120.9	119.8
C18	C19	C14	117.0	120.0
C18	C19	H19	121.5	120.0
C18	C17	C16	120.9	119.8
C18	C17	H17	119.5	120.1
C19	C14	C15	121.1	120.2
C19	C14	C12	125.6	119.9
C14	C19	H19	121.5	120.0
C17	C16	O17	122.2	120.0
C17	C16	C15	117.4	120.0
C16	C17	H17	119.6	120.1
O17	C16	C15	120.4	120.0
C16	C15	C14	122.8	120.2
C16	C15	H15	118.6	119.9
C15	C14	C12	113.3	119.9
C14	C15	H15	118.6	119.9
C14	C12	C13	112.6	109.5
C14	C12	C11	112.4	109.5
C14	C12	H12	106.7	109.5
C13	C12	C11	113.8	109.4
C13	C12	H12	105.1	109.5
C12	C13	H13	109.5	109.5
C12	C13	H13A	109.5	109.5
C12	C13	H13B	109.5	109.4
C12	C11	C10	173.8	180.0
C11	C12	H12	105.4	109.4
N4	C3	N7	119.0	119.0
N4	C3	N2	120.0	122.0
N7	C3	N2	120.9	119.0
C3	N7	HN7	109.5	120.1
C3	N7	HN7A	109.5	120.0
C3	N2	C1	122.3	120.8
N2	C1	N9	119.9	120.5
C1	N9	HN9	109.5	120.0
C1	N9	HN9A	109.5	120.1
H2	C2	H2A	109.5	109.4
H2	C2	H2B	109.5	109.5
H2A	C2	H2B	109.5	109.5
H26	C26	H26A	109.5	109.4
H26	C26	H26B	109.5	109.4
H26A	C26	H26B	109.5	109.5
H13	C13	H13A	109.4	109.4
H13	C13	H13B	109.5	109.5
H13A	C13	H13B	109.5	109.5
H8	C8	H8A	109.4	109.4
H8	C8	H8B	109.5	109.5
H8A	C8	H8B	109.5	109.5
HN7	N7	HN7A	109.5	119.9
HN9	N9	HN9A	109.4	119.9

Torsion Angles for 53S

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C10	C6	C5	C1	181.7	180.3
C5	C6	C10	C11	163.0	241.0
C5	C6	C1	N2	358.4	0.6
C5	C6	C1	N9	182.0	180.1
C8	C5	C6	N4	181.8	180.1
C6	C5	C8	H8	302.5	90.0
C6	C5	C8	H8A	62.5	210.0
C6	C5	C8	H8B	182.5	329.9
C6	C5	N4	C3	1.5	0.1
C5	C6	C10	C1	178.3	179.6
C10	C6	C5	C8	2.2	0.1
C10	C6	C5	N4	180.4	180.0
C10	C6	C1	N2	176.7	180.2
C10	C6	C1	N9	0.3	359.7
C12	C11	C10	C6	48.9	264.1
C5	C6	C1	C10	181.7	180.3
C1	C6	C5	C8	180.5	179.7
C1	C6	C5	N4	358.8	359.7
C1	C6	C10	C11	344.7	61.3
C3	N2	C1	C6	4.4	359.4
N2	C1	C6	N9	176.4	180.5
C6	C1	N9	HN9	144.0	360.0
C6	C1	N9	HN9A	264.0	180.0
C8	C5	C6	C10	2.2	0.1
C8	C5	C6	C1	180.5	179.7
C6	C5	C8	N4	178.2	179.9
C8	C5	N4	C3	179.8	180.0
H8	C8	C5	H8A	240.0	240.0
H8	C8	C5	H8B	120.0	120.1
H8A	C8	C5	H8B	240.0	240.0
N4	C5	C6	C10	180.4	180.0
N4	C5	C6	C1	358.8	359.7
C6	C5	N4	C8	181.7	180.1
N4	C5	C8	H8	124.3	270.1
N4	C5	C8	H8A	244.3	30.0
N4	C5	C8	H8B	4.3	150.0
C5	N4	C3	N7	176.8	180.0
C5	N4	C3	N2	1.2	359.9
C17	C16	O17	C2	205.5	360.0
C2	O17	C16	C15	24.6	180.0
H2	C2	O17	H2A	240.0	240.1
H2	C2	O17	H2B	120.0	120.0
H2A	C2	O17	H2B	240.0	239.9
C21	C20	C25	C24	359.6	360.0
C21	C20	C25	C18	180.5	179.9
C25	C20	C21	H20	180.0	180.3
C20	C21	C22	C26	179.3	180.0
C20	C21	C22	C23	1.0	360.0
C22	C21	C20	H21	180.0	180.0
C25	C20	C21	C22	359.5	0.0
C21	C20	C25	H20	180.0	179.7
C25	C20	C21	H21	179.5	180.0
C23	C24	C25	C20	0.8	359.9
C24	C25	C20	C18	179.1	180.1
C20	C25	C24	H24	180.8	180.1
C20	C25	C18	C19	38.4	180.0
C20	C25	C18	C17	215.2	359.7
C22	C21	C20	C25	359.5	0.0
C22	C21	C20	H20	179.5	179.7
C20	C21	C22	H21	180.0	180.0
C26	C22	C21	C23	178.3	180.0
C21	C22	C26	H26	23.5	90.0
C21	C22	C26	H26A	143.5	210.0
C21	C22	C26	H26B	263.5	330.0
C21	C22	C23	C24	359.5	359.9
C21	C22	C23	H23	179.5	180.0
C21	C22	C26	C23	181.7	180.0
C26	C22	C21	H21	359.3	360.0
C26	C22	C23	C24	181.2	180.0
C26	C22	C23	H23	1.2	0.1
H26	C26	C22	H26A	240.0	240.0
H26	C26	C22	H26B	120.0	120.0
H26A	C26	C22	H26B	240.0	239.9
C21	C22	C23	C26	178.3	180.0
C23	C22	C21	H21	181.0	180.0
C23	C22	C26	H26	201.8	270.0
C23	C22	C26	H26A	321.8	29.9
C23	C22	C26	H26B	81.8	150.0
C22	C23	C24	C25	359.7	0.1
C24	C23	C22	H23	180.0	179.9
C22	C23	C24	H24	179.7	180.0
C20	C25	C24	C23	0.8	359.9
C22	C23	C24	H23	180.0	180.1
C23	C24	C25	C18	179.9	180.0
C25	C24	C23	H24	180.0	180.1
C20	C25	C24	C18	180.8	179.9
C24	C25	C20	H20	179.7	180.3
C25	C24	C23	H23	179.7	180.0
C23	C24	C25	H24	180.0	179.9
C24	C25	C18	C19	219.2	359.9
C24	C25	C18	C17	36.1	179.7
C20	C25	C18	C24	179.1	180.1
C18	C25	C20	H20	0.5	0.3
C18	C25	C24	H24	359.9	0.1
C19	C18	C25	C17	183.2	180.3
C25	C18	C19	C14	178.3	180.0
C25	C18	C19	H19	358.3	360.0
C25	C18	C17	C16	181.3	180.0
C25	C18	C17	H17	1.3	360.0
C25	C18	C19	C17	176.7	179.7
C19	C18	C17	C16	358.2	359.7
C19	C18	C17	H17	178.2	179.7
C18	C19	C14	C15	359.2	360.0
C18	C19	C14	C12	177.8	180.0
C14	C19	C18	H19	180.0	180.1
C25	C18	C17	C19	183.1	180.3
C17	C18	C19	C14	1.6	0.3
C17	C18	C19	H19	181.6	180.2
C18	C17	C16	O17	180.2	180.0
C18	C17	C16	C15	1.0	360.0
C16	C17	C18	H17	180.0	180.0
C14	C19	C18	C17	1.6	0.3
C18	C19	C14	H19	180.0	179.9
C16	C15	C14	C19	0.1	359.7
C15	C14	C19	C12	181.4	180.0
C19	C14	C15	H15	180.0	180.1
C19	C14	C12	C13	297.3	120.0
C19	C14	C12	C11	67.4	240.0
C19	C14	C12	H12	182.5	359.9
C2	O17	C16	C17	205.5	360.0
C18	C17	C16	H17	180.0	180.0
O17	C16	C17	C15	179.2	180.1
C17	C16	C15	C14	359.8	0.3
C17	C16	C15	H15	179.8	180.0
C16	O17	C2	H2	113.8	300.1
C16	O17	C2	H2A	233.8	60.0
C16	O17	C2	H2B	353.8	180.0
C17	C16	O17	C15	180.8	179.9
O17	C16	C17	H17	0.3	0.0
O17	C16	C15	C14	180.6	180.3
O17	C16	C15	H15	0.6	359.9
C19	C14	C15	C16	0.1	359.7
C17	C16	C15	O17	179.2	180.1
C15	C16	C17	H17	181.0	180.0
C16	C15	C14	C12	181.3	179.7
C14	C15	C16	H15	180.0	180.3
C19	C14	C15	C12	178.8	180.0
C15	C14	C19	H19	179.2	180.0
C16	C15	C14	H15	180.0	179.7
C15	C14	C12	C13	116.0	300.0
C15	C14	C12	C11	246.1	60.0
C15	C14	C12	H12	1.2	180.0
C19	C14	C12	C15	181.3	180.0
C12	C14	C19	H19	357.8	0.1
C12	C14	C15	H15	1.3	0.0
C13	C12	C14	C11	229.9	240.0
C13	C12	C14	H12	114.9	120.0
C14	C12	C13	H13	205.6	60.0
C14	C12	C13	H13A	325.6	180.0
C14	C12	C13	H13B	85.6	300.0
C14	C12	C11	C10	138.9	34.9
C11	C12	C14	H12	244.9	240.0
C14	C12	C13	C11	129.4	120.0
C14	C12	C13	H12	244.2	240.0
C13	C12	C11	C10	268.3	154.9
C11	C12	C13	H12	114.8	120.0
H13	C13	C12	H13A	240.1	240.0
H13	C13	C12	H13B	120.0	120.0
H13A	C13	C12	H13B	240.0	240.0
C6	C10	C11	C12	48.9	264.1
C14	C12	C11	C13	230.5	240.0
C14	C12	C11	H12	115.9	120.0
C13	C12	C11	H12	245.4	240.0
C11	C12	C13	H13	76.3	300.0
C11	C12	C13	H13A	196.2	60.0
C11	C12	C13	H13B	316.2	180.0
C11	C10	C6	C1	344.7	61.3
C10	C11	C12	H12	23.0	274.8
N7	C3	N4	N2	175.6	180.1
N4	C3	N7	HN7	16.5	359.9
N4	C3	N7	HN7A	136.5	180.0
N4	C3	N2	C1	355.7	0.3
N4	C3	N7	N2	184.4	179.9
N7	C3	N2	C1	180.2	180.2
HN7	N7	C3	HN7A	240.0	179.9
C6	C1	N2	C3	4.4	359.4
N4	C3	N2	N7	175.6	180.1
N2	C3	N7	HN7	192.1	180.0
N2	C3	N7	HN7A	312.1	0.1
C3	N2	C1	N9	180.9	179.9
C6	C1	N2	N9	183.5	179.5
N2	C1	N9	HN9	327.7	179.4
N2	C1	N9	HN9A	87.7	359.5
C6	C1	N9	N2	176.3	180.5
HN9	N9	C1	HN9A	240.0	180.0
H2	C2	O17	C16	113.8	300.1
O17	C2	H2	H2A	120.0	119.9
O17	C2	H2	H2B	240.0	240.0
H2A	C2	H2	H2B	120.0	120.0
H2A	C2	O17	C16	233.8	60.0
O17	C2	H2A	H2	240.0	240.1
O17	C2	H2A	H2B	120.0	120.1
H2	C2	H2A	H2B	240.0	240.0
H2B	C2	O17	C16	353.8	180.0
O17	C2	H2B	H2	120.0	120.0
O17	C2	H2B	H2A	240.0	240.0
H2	C2	H2B	H2A	120.0	120.0
C21	C20	H20	C25	180.0	180.3
H20	C20	C21	C22	179.5	179.7
H20	C20	C21	H21	359.5	359.7
H20	C20	C25	C24	179.7	180.3
H20	C20	C25	C18	0.5	0.3
H21	C21	C20	C25	179.5	180.0
C20	C21	H21	C22	180.0	180.0
H21	C21	C20	H20	359.5	359.7
H21	C21	C22	C26	359.3	360.0
H21	C21	C22	C23	181.0	180.0
H26	C26	C22	C23	201.8	270.0
C22	C26	H26	H26A	120.0	120.0
C22	C26	H26	H26B	240.0	240.0
H26A	C26	H26	H26B	120.0	120.0
H26A	C26	C22	C23	321.8	29.9
C22	C26	H26A	H26	240.0	240.0
C22	C26	H26A	H26B	120.0	120.0
H26	C26	H26A	H26B	240.0	240.0
H26B	C26	C22	C23	81.8	150.0
C22	C26	H26B	H26	120.0	120.0
C22	C26	H26B	H26A	240.0	239.9
H26	C26	H26B	H26A	120.0	120.0
C22	C23	H23	C24	180.0	179.9
H23	C23	C24	C25	179.7	180.0
H23	C23	C24	H24	359.7	359.9
C23	C24	H24	C25	180.0	180.1
H24	C24	C23	H23	359.7	359.9
H24	C24	C25	C18	359.9	0.1
H19	C19	C18	C17	181.6	180.2
C18	C19	H19	C14	180.0	180.1
H19	C19	C14	C15	179.2	180.0
H19	C19	C14	C12	357.8	0.1
C18	C17	H17	C16	180.0	180.0
H17	C17	C16	O17	0.3	0.0
H17	C17	C16	C15	181.0	180.0
C16	C15	H15	C14	180.0	180.3
H15	C15	C14	C12	1.3	0.0
C14	C12	H12	C13	119.8	120.0
C14	C12	H12	C11	240.3	240.0
C13	C12	H12	C11	120.5	120.0
H12	C12	C13	H13	321.5	180.1
H12	C12	C13	H13A	81.4	300.0
H12	C12	C13	H13B	201.4	60.0
H12	C12	C11	C10	23.0	274.8
H13	C13	C12	C11	76.3	300.0
H13	C13	C12	H12	321.5	180.1
C12	C13	H13	H13A	120.0	120.0
C12	C13	H13	H13B	240.0	240.0
H13A	C13	H13	H13B	120.0	120.0
H13A	C13	C12	C11	196.2	60.0
H13A	C13	C12	H12	81.4	300.0
C12	C13	H13A	H13	240.0	240.0
C12	C13	H13A	H13B	120.0	120.0
H13	C13	H13A	H13B	240.0	240.0
H13B	C13	C12	C11	316.2	180.0
H13B	C13	C12	H12	201.4	60.0
C12	C13	H13B	H13	120.0	120.0
C12	C13	H13B	H13A	240.0	240.0
H13	C13	H13B	H13A	120.0	120.0
H8	C8	C5	N4	124.3	270.1
C5	C8	H8	H8A	120.0	120.0
C5	C8	H8	H8B	240.0	239.9
H8A	C8	H8	H8B	120.0	120.0
H8A	C8	C5	N4	244.3	30.0
C5	C8	H8A	H8	240.0	240.0
C5	C8	H8A	H8B	120.0	120.0
H8	C8	H8A	H8B	240.0	240.0
H8B	C8	C5	N4	4.3	150.0
C5	C8	H8B	H8	120.0	120.1
C5	C8	H8B	H8A	240.0	240.0
H8	C8	H8B	H8A	120.0	120.0
HN7	N7	C3	N2	192.1	180.0
C3	N7	HN7	HN7A	120.0	180.1
HN7A	N7	C3	N2	312.1	0.1
C3	N7	HN7A	HN7	240.0	179.9
C1	N9	HN9	HN9A	120.0	180.0
C1	N9	HN9A	HN9	240.0	180.0