PDB Chemical Component 53R

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 53R

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C20	C21	1.387	1.380
C20	C25	1.394	1.393
C21	C22	1.410	1.384
C22	C23	1.407	1.383
C23	C24	1.401	1.380
C24	C25	1.404	1.394
C25	C18	1.384	1.484
C18	C19	1.409	1.393
C18	C17	1.411	1.393
C19	C14	1.390	1.381
C17	C16	1.395	1.385
C16	O17	1.402	1.359
C16	C15	1.400	1.388
O17	C2	1.541	1.429
C15	C14	1.396	1.382
C14	C12	1.496	1.507
C12	C13	1.538	1.530
C12	C11	1.485	1.472
C11	C10	1.173	1.174
C10	C6	1.409	1.432
C6	C5	1.408	1.395
C6	C1	1.423	1.410
C5	C8	1.550	1.507
C5	N4	1.340	1.323
N4	C3	1.338	1.325
C3	N7	1.336	1.383
C3	N2	1.311	1.326
N2	C1	1.337	1.327
C1	N9	1.354	1.383
C20	H20	1.080	1.079
C21	H21	1.080	1.080
C22	H22	1.080	1.079
C23	H23	1.080	1.080
C24	H24	1.080	1.079
C19	H19	1.080	1.080
C17	H17	1.080	1.081
C2	H2	1.100	1.090
C2	H2A	1.100	1.090
C2	H2B	1.100	1.090
C15	H15	1.080	1.080
C12	H12	1.100	1.090
C13	H13	1.100	1.091
C13	H13A	1.100	1.090
C13	H13B	1.100	1.090
C8	H8	1.100	1.090
C8	H8A	1.100	1.091
C8	H8B	1.100	1.090
N7	HN7	1.000	0.969
N7	HN7A	1.000	0.970
N9	HN9	1.000	0.970
N9	HN9A	1.000	0.970

Bond Angles for 53R

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C21	C20	C25	120.0	119.9
C20	C21	C22	119.0	120.1
C21	C20	H20	120.0	120.1
C20	C21	H21	120.5	119.9
C20	C25	C24	121.4	119.8
C20	C25	C18	118.2	120.1
C25	C20	H20	120.0	120.1
C21	C22	C23	121.5	120.2
C22	C21	H21	120.5	119.9
C21	C22	H22	119.2	119.9
C22	C23	C24	118.8	120.2
C23	C22	H22	119.3	119.9
C22	C23	H23	120.6	119.9
C23	C24	C25	119.4	119.8
C24	C23	H23	120.6	119.9
C23	C24	H24	120.3	120.1
C24	C25	C18	120.4	120.1
C25	C24	H24	120.3	120.1
C25	C18	C19	118.8	120.1
C25	C18	C17	120.1	120.1
C19	C18	C17	121.1	119.8
C18	C19	C14	116.6	120.0
C18	C19	H19	121.7	120.0
C18	C17	C16	121.6	119.9
C18	C17	H17	119.2	120.1
C19	C14	C15	122.5	120.2
C19	C14	C12	122.3	119.9
C14	C19	H19	121.7	120.0
C17	C16	O17	122.2	120.0
C17	C16	C15	117.0	120.0
C16	C17	H17	119.2	120.0
O17	C16	C15	120.8	120.0
C16	O17	C2	116.4	117.0
C16	C15	C14	121.3	120.2
C16	C15	H15	119.3	119.9
O17	C2	H2	109.5	109.5
O17	C2	H2A	109.4	109.5
O17	C2	H2B	109.5	109.5
C15	C14	C12	115.2	119.9
C14	C15	H15	119.4	119.9
C14	C12	C13	108.1	109.5
C14	C12	C11	112.1	109.5
C14	C12	H12	112.0	109.5
C13	C12	C11	117.7	109.5
C13	C12	H12	105.6	109.5
C12	C13	H13	109.5	109.5
C12	C13	H13A	109.5	109.5
C12	C13	H13B	109.4	109.5
C12	C11	C10	175.1	180.0
C11	C12	H12	101.0	109.5
C11	C10	C6	175.4	180.0
C10	C6	C5	120.3	120.9
C10	C6	C1	120.4	120.9
C5	C6	C1	119.2	118.2
C6	C5	C8	123.7	120.4
C6	C5	N4	117.8	119.1
C6	C1	N2	117.0	118.9
C6	C1	N9	124.9	120.6
C8	C5	N4	118.5	120.4
C5	C8	H8	109.5	109.4
C5	C8	H8A	109.5	109.5
C5	C8	H8B	109.4	109.5
C5	N4	C3	122.0	121.1
N4	C3	N7	120.2	119.0
N4	C3	N2	120.8	122.0
N7	C3	N2	118.9	119.0
C3	N7	HN7	109.5	120.0
C3	N7	HN7A	109.5	120.0
C3	N2	C1	123.2	120.8
N2	C1	N9	118.0	120.6
C1	N9	HN9	109.5	120.0
C1	N9	HN9A	109.5	120.0
H2	C2	H2A	109.5	109.5
H2	C2	H2B	109.5	109.5
H2A	C2	H2B	109.5	109.4
H13	C13	H13A	109.5	109.5
H13	C13	H13B	109.5	109.5
H13A	C13	H13B	109.5	109.5
H8	C8	H8A	109.5	109.5
H8	C8	H8B	109.5	109.5
H8A	C8	H8B	109.5	109.5
HN7	N7	HN7A	109.4	120.0
HN9	N9	HN9A	109.5	120.0

Torsion Angles for 53R

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C21	C20	C25	C24	359.1	360.0
C21	C20	C25	C18	179.9	180.0
C25	C20	C21	H20	180.0	180.2
C20	C21	C22	C23	359.2	0.0
C22	C21	C20	H21	180.0	180.0
C20	C21	C22	H22	179.2	180.0
C25	C20	C21	C22	0.8	360.0
C21	C20	C25	H20	180.0	179.8
C25	C20	C21	H21	180.7	180.0
C23	C24	C25	C20	1.0	0.1
C24	C25	C20	C18	179.2	180.0
C20	C25	C24	H24	181.0	180.0
C20	C25	C18	C19	29.9	180.0
C20	C25	C18	C17	209.5	359.7
C22	C21	C20	C25	0.8	360.0
C22	C21	C20	H20	180.8	179.7
C20	C21	C22	H21	180.0	180.0
C21	C22	C23	C24	0.9	0.0
C23	C22	C21	H22	180.0	180.1
C21	C22	C23	H23	180.9	179.9
C23	C22	C21	H21	179.2	180.0
C21	C22	C23	H22	180.0	179.9
C22	C23	C24	C25	359.0	359.9
C24	C23	C22	H23	180.0	180.1
C22	C23	C24	H24	179.0	180.0
C20	C25	C24	C23	1.0	0.1
C24	C23	C22	H22	180.9	180.1
C22	C23	C24	H23	180.0	179.9
C23	C24	C25	C18	180.2	180.0
C25	C24	C23	H24	180.0	179.9
C20	C25	C24	C18	180.8	180.0
C24	C25	C20	H20	179.1	180.2
C25	C24	C23	H23	179.0	180.0
C23	C24	C25	H24	180.0	180.1
C24	C25	C18	C19	210.7	0.0
C24	C25	C18	C17	30.2	179.7
C20	C25	C18	C24	179.2	180.0
C18	C25	C20	H20	359.9	0.3
C18	C25	C24	H24	0.2	360.0
C19	C18	C25	C17	180.4	180.3
C25	C18	C19	C14	179.9	180.0
C25	C18	C19	H19	359.9	360.0
C25	C18	C17	C16	180.7	180.0
C25	C18	C17	H17	0.7	360.0
C25	C18	C19	C17	179.6	179.7
C19	C18	C17	C16	0.2	359.7
C19	C18	C17	H17	180.2	179.7
C18	C19	C14	C15	0.4	0.0
C18	C19	C14	C12	177.7	180.0
C14	C19	C18	H19	180.0	180.0
C25	C18	C17	C19	180.4	180.3
C17	C18	C19	C14	0.3	0.3
C17	C18	C19	H19	180.3	180.3
C18	C17	C16	O17	181.2	180.0
C18	C17	C16	C15	358.6	360.0
C16	C17	C18	H17	180.0	180.0
C14	C19	C18	C17	0.3	0.3
C18	C19	C14	H19	180.0	180.0
C16	C15	C14	C19	358.3	359.7
C15	C14	C19	C12	182.7	180.0
C19	C14	C15	H15	178.3	180.0
C19	C14	C12	C13	299.8	120.0
C19	C14	C12	C11	71.1	240.0
C19	C14	C12	H12	183.8	0.0
C18	C17	C16	H17	180.0	180.0
O17	C16	C17	C15	182.6	180.1
C17	C16	O17	C2	193.8	360.0
C17	C16	C15	C14	2.1	0.3
C17	C16	C15	H15	182.1	180.0
C17	C16	O17	C15	177.3	179.9
O17	C16	C17	H17	1.2	0.1
O17	C16	C15	C14	179.6	180.3
O17	C16	C15	H15	359.6	360.0
C16	O17	C2	H2	119.9	300.0
C16	O17	C2	H2A	239.9	60.1
C16	O17	C2	H2B	359.9	180.0
C19	C14	C15	C16	358.3	359.7
C17	C16	C15	O17	182.5	180.1
C15	C16	C17	H17	178.6	180.0
C15	C16	O17	C2	16.5	180.0
C16	C15	C14	C12	180.8	179.7
C14	C15	C16	H15	180.0	180.3
C2	O17	C16	C15	16.5	180.0
H2	C2	O17	H2A	240.0	240.0
H2	C2	O17	H2B	120.0	120.0
H2A	C2	O17	H2B	240.0	240.1
C19	C14	C15	C12	177.5	180.0
C15	C14	C19	H19	180.4	180.0
C16	C15	C14	H15	180.0	179.7
C15	C14	C12	C13	117.3	300.0
C15	C14	C12	C11	248.6	60.0
C15	C14	C12	H12	1.3	180.0
C19	C14	C12	C15	182.5	180.0
C12	C14	C19	H19	357.7	360.0
C12	C14	C15	H15	0.8	0.0
C13	C12	C14	C11	228.7	240.0
C13	C12	C14	H12	116.0	120.0
C14	C12	C13	H13	205.6	180.0
C14	C12	C13	H13A	325.6	300.0
C14	C12	C13	H13B	85.6	60.0
C14	C12	C11	C10	143.4	189.7
C11	C12	C14	H12	247.3	240.0
C14	C12	C13	C11	128.2	120.0
C14	C12	C13	H12	239.9	240.0
C13	C12	C11	C10	269.7	309.7
C11	C12	C13	H12	111.7	120.0
H13	C13	C12	H13A	240.0	240.0
H13	C13	C12	H13B	120.0	120.0
H13A	C13	C12	H13B	240.0	240.0
C14	C12	C11	C13	233.7	240.0
C14	C12	C11	H12	119.4	120.0
C13	C12	C11	H12	245.7	240.0
C11	C12	C13	H13	77.4	60.0
C11	C12	C13	H13A	197.4	180.0
C11	C12	C13	H13B	317.4	300.0
C12	C11	C10	C6	38.8	303.1
C10	C11	C12	H12	24.0	69.7
C11	C10	C6	C5	172.7	47.2
C11	C10	C6	C1	352.4	226.9
C5	C6	C10	C1	180.3	180.3
C10	C6	C5	C8	359.9	360.0
C10	C6	C5	N4	180.1	179.9
C10	C6	C1	N2	180.1	179.8
C10	C6	C1	N9	359.7	0.1
C10	C6	C5	C1	179.7	179.7
C5	C6	C1	N2	359.7	359.5
C5	C6	C1	N9	179.4	179.7
C8	C5	C6	N4	179.8	180.0
C6	C5	C8	H8	303.6	90.0
C6	C5	C8	H8A	63.6	210.0
C6	C5	C8	H8B	183.6	330.0
C6	C5	N4	C3	358.5	0.0
C10	C6	C1	C5	180.3	180.3
C1	C6	C5	C8	180.2	180.3
C1	C6	C5	N4	0.5	0.3
C3	N2	C1	C6	1.1	0.5
N2	C1	C6	N9	180.3	179.7
C6	C1	N9	HN9	145.3	359.9
C6	C1	N9	HN9A	265.3	180.0
C8	C5	C6	C1	180.2	180.3
C6	C5	C8	N4	180.3	180.0
C8	C5	N4	C3	178.8	180.0
H8	C8	C5	H8A	240.0	240.0
H8	C8	C5	H8B	120.0	120.0
H8A	C8	C5	H8B	240.0	240.0
N4	C5	C6	C1	0.5	0.3
C6	C5	N4	C8	179.8	180.0
N4	C5	C8	H8	123.3	270.0
N4	C5	C8	H8A	243.4	30.0
N4	C5	C8	H8B	3.4	150.0
C5	N4	C3	N7	178.4	180.0
C5	N4	C3	N2	2.3	360.0
N7	C3	N4	N2	176.1	180.0
N4	C3	N7	HN7	15.6	0.0
N4	C3	N7	HN7A	135.5	180.0
N4	C3	N2	C1	357.8	359.7
N4	C3	N7	N2	183.8	180.0
N7	C3	N2	C1	181.7	179.7
HN7	N7	C3	HN7A	240.0	180.1
C6	C1	N2	C3	1.1	0.5
N4	C3	N2	N7	176.2	180.0
N2	C3	N7	HN7	191.7	180.1
N2	C3	N7	HN7A	311.7	360.0
C3	N2	C1	N9	181.5	180.3
C6	C1	N2	N9	179.7	180.3
N2	C1	N9	HN9	324.9	180.2
N2	C1	N9	HN9A	85.0	0.3
C6	C1	N9	N2	180.3	179.7
HN9	N9	C1	HN9A	240.0	179.9
C21	C20	H20	C25	180.0	180.2
H20	C20	C21	C22	180.8	179.7
H20	C20	C21	H21	0.8	359.7
H20	C20	C25	C24	179.1	180.2
H20	C20	C25	C18	359.9	0.3
H21	C21	C20	C25	180.7	180.0
C20	C21	H21	C22	180.0	180.0
H21	C21	C20	H20	0.8	359.7
H21	C21	C22	C23	179.2	180.0
H21	C21	C22	H22	359.2	360.0
C21	C22	H22	C23	180.0	180.1
H22	C22	C21	H21	359.2	360.0
H22	C22	C23	C24	180.9	180.1
H22	C22	C23	H23	0.9	0.0
C22	C23	H23	C24	180.0	180.1
H23	C23	C22	H22	0.9	0.0
H23	C23	C24	C25	179.0	180.0
H23	C23	C24	H24	359.0	0.1
C23	C24	H24	C25	180.0	179.9
H24	C24	C23	H23	359.0	0.1
H24	C24	C25	C18	0.2	360.0
H19	C19	C18	C17	180.3	180.3
C18	C19	H19	C14	180.0	180.0
H19	C19	C14	C15	180.4	180.0
H19	C19	C14	C12	357.7	360.0
C18	C17	H17	C16	180.0	180.0
H17	C17	C16	O17	1.2	0.1
H17	C17	C16	C15	178.6	180.0
O17	C2	H2	H2A	120.0	120.0
O17	C2	H2	H2B	240.0	239.9
H2A	C2	H2	H2B	120.1	119.9
O17	C2	H2A	H2	240.0	239.9
O17	C2	H2A	H2B	120.0	120.0
H2	C2	H2A	H2B	240.0	240.0
O17	C2	H2B	H2	120.0	120.1
O17	C2	H2B	H2A	240.0	240.0
H2	C2	H2B	H2A	120.0	120.0
C16	C15	H15	C14	180.0	180.3
H15	C15	C14	C12	0.8	0.0
C14	C12	H12	C13	117.5	120.0
C14	C12	H12	C11	240.5	240.0
C13	C12	H12	C11	123.1	120.0
H12	C12	C13	H13	325.6	300.0
H12	C12	C13	H13A	85.6	60.0
H12	C12	C13	H13B	205.7	180.0
H12	C12	C11	C10	24.0	69.7
H13	C13	C12	C11	77.4	60.0
H13	C13	C12	H12	325.6	300.0
C12	C13	H13	H13A	120.0	120.0
C12	C13	H13	H13B	240.0	240.0
H13A	C13	H13	H13B	120.0	120.0
H13A	C13	C12	C11	197.4	180.0
H13A	C13	C12	H12	85.6	60.0
C12	C13	H13A	H13	240.0	240.0
C12	C13	H13A	H13B	120.0	120.0
H13	C13	H13A	H13B	240.0	240.0
H13B	C13	C12	C11	317.4	300.0
H13B	C13	C12	H12	205.7	180.0
C12	C13	H13B	H13	120.0	120.0
C12	C13	H13B	H13A	240.0	240.0
H13	C13	H13B	H13A	120.0	120.0
H8	C8	C5	N4	123.3	270.0
C5	C8	H8	H8A	120.0	120.0
C5	C8	H8	H8B	240.0	240.0
H8A	C8	H8	H8B	120.0	120.0
H8A	C8	C5	N4	243.4	30.0
C5	C8	H8A	H8	239.9	240.0
C5	C8	H8A	H8B	120.0	120.0
H8	C8	H8A	H8B	240.0	240.0
H8B	C8	C5	N4	3.4	150.0
C5	C8	H8B	H8	120.0	120.0
C5	C8	H8B	H8A	240.0	240.0
H8	C8	H8B	H8A	120.0	120.0
HN7	N7	C3	N2	191.7	180.1
C3	N7	HN7	HN7A	120.0	179.9
HN7A	N7	C3	N2	311.7	360.0
C3	N7	HN7A	HN7	240.0	180.1
C1	N9	HN9	HN9A	120.0	180.1
C1	N9	HN9A	HN9	240.0	179.9