PDB Chemical Component 53J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 53J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C02 |
1.421 |
1.385 |
| C02 |
N36 |
1.360 |
1.330 |
| C02 |
C03 |
1.392 |
1.397 |
| N36 |
C34 |
1.347 |
1.324 |
| C27 |
C26 |
1.383 |
1.381 |
| C27 |
C28 |
1.381 |
1.384 |
| C04 |
C03 |
1.534 |
1.507 |
| C04 |
C05 |
1.532 |
1.507 |
| C26 |
C25 |
1.439 |
1.395 |
| C03 |
C32 |
1.415 |
1.381 |
| C34 |
N35 |
1.437 |
1.384 |
| C34 |
N33 |
1.347 |
1.325 |
| C28 |
C29 |
1.388 |
1.385 |
| C05 |
C31 |
1.411 |
1.377 |
| C05 |
C06 |
1.400 |
1.385 |
| C31 |
C13 |
1.408 |
1.401 |
| C25 |
C19 |
1.472 |
1.474 |
| C25 |
C24 |
1.328 |
1.399 |
| C19 |
N18 |
1.406 |
1.300 |
| C32 |
N33 |
1.359 |
1.325 |
| C06 |
C07 |
1.410 |
1.385 |
| C29 |
C24 |
1.436 |
1.376 |
| C24 |
C20 |
1.515 |
1.506 |
| C13 |
C14 |
1.530 |
1.470 |
| C13 |
C10 |
1.407 |
1.402 |
| N18 |
N17 |
1.356 |
1.403 |
| C14 |
C15 |
1.370 |
1.350 |
| C07 |
C10 |
1.411 |
1.391 |
| C07 |
O08 |
1.409 |
1.360 |
| C09 |
O08 |
1.398 |
1.428 |
| C10 |
O11 |
1.385 |
1.358 |
| N17 |
C20 |
1.455 |
1.469 |
| N17 |
C16 |
1.442 |
1.347 |
| C20 |
C21 |
1.504 |
1.507 |
| C12 |
O11 |
1.388 |
1.429 |
| C15 |
C16 |
1.519 |
1.462 |
| C16 |
O30 |
1.223 |
1.217 |
| C37 |
C22 |
1.524 |
1.507 |
| C21 |
C22 |
1.388 |
1.310 |
| C22 |
C23 |
1.505 |
1.506 |
| C12 |
H1 |
1.100 |
1.090 |
| C12 |
H2 |
1.100 |
1.091 |
| C12 |
H3 |
1.100 |
1.090 |
| C14 |
H4 |
1.080 |
1.079 |
| C15 |
H5 |
1.080 |
1.080 |
| C19 |
H6 |
1.080 |
1.080 |
| N01 |
H8 |
1.000 |
0.970 |
| N01 |
H9 |
1.000 |
0.971 |
| C04 |
H10 |
1.100 |
1.090 |
| C04 |
H11 |
1.100 |
1.090 |
| C06 |
H12 |
1.080 |
1.080 |
| C09 |
H13 |
1.100 |
1.090 |
| C09 |
H14 |
1.100 |
1.091 |
| C09 |
H15 |
1.100 |
1.090 |
| C20 |
H17 |
1.100 |
1.090 |
| C21 |
H18 |
1.080 |
1.079 |
| C23 |
H21 |
1.100 |
1.090 |
| C23 |
H22 |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.090 |
| C26 |
H24 |
1.080 |
1.080 |
| C27 |
H25 |
1.080 |
1.080 |
| C28 |
H26 |
1.080 |
1.080 |
| C29 |
H27 |
1.080 |
1.080 |
| C31 |
H28 |
1.080 |
1.080 |
| C32 |
H29 |
1.080 |
1.080 |
| N35 |
H30 |
1.000 |
0.971 |
| N35 |
H31 |
1.000 |
0.970 |
| C37 |
H32 |
1.100 |
1.090 |
| C37 |
H33 |
1.099 |
1.091 |
| C37 |
H34 |
1.100 |
1.090 |
Bond Angles for 53J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N01 |
C02 |
N36 |
121.2 |
120.5 |
| N01 |
C02 |
C03 |
119.5 |
120.5 |
| C02 |
N01 |
H8 |
109.5 |
120.1 |
| C02 |
N01 |
H9 |
109.5 |
120.0 |
| C03 |
C02 |
N36 |
119.3 |
119.0 |
| C02 |
N36 |
C34 |
120.8 |
120.6 |
| C02 |
C03 |
C32 |
118.9 |
118.5 |
| C27 |
C26 |
H24 |
120.0 |
120.2 |
| C27 |
C28 |
C29 |
119.9 |
120.4 |
| C28 |
C27 |
H25 |
120.0 |
119.9 |
| C27 |
C28 |
H26 |
120.0 |
119.8 |
| C04 |
C03 |
C32 |
123.5 |
120.7 |
| C04 |
C05 |
C31 |
120.0 |
119.8 |
| C04 |
C05 |
C06 |
119.8 |
119.8 |
| C05 |
C04 |
H10 |
108.3 |
109.5 |
| C05 |
C04 |
H11 |
108.3 |
109.5 |
| C03 |
C32 |
N33 |
118.8 |
119.3 |
| C03 |
C32 |
H29 |
120.6 |
120.4 |
| C34 |
N35 |
H30 |
109.5 |
120.0 |
| C34 |
N35 |
H31 |
109.4 |
120.0 |
| C29 |
C28 |
H26 |
120.1 |
119.9 |
| C28 |
C29 |
H27 |
119.9 |
120.0 |
| C06 |
C05 |
C31 |
120.2 |
120.4 |
| C05 |
C31 |
H28 |
120.0 |
120.1 |
| C05 |
C06 |
C07 |
120.0 |
120.4 |
| C05 |
C06 |
H12 |
120.0 |
119.8 |
| C25 |
C19 |
H6 |
120.8 |
120.2 |
| C19 |
N18 |
N17 |
120.4 |
120.0 |
| N18 |
C19 |
H6 |
120.8 |
120.2 |
| N33 |
C32 |
H29 |
120.6 |
120.4 |
| C06 |
C07 |
O08 |
119.1 |
120.0 |
| C07 |
C06 |
H12 |
120.0 |
119.8 |
| C24 |
C20 |
H17 |
109.5 |
109.7 |
| C13 |
C14 |
C15 |
122.0 |
120.0 |
| C13 |
C14 |
H4 |
119.0 |
120.0 |
| C13 |
C10 |
O11 |
120.0 |
120.2 |
| N18 |
N17 |
C20 |
120.8 |
119.4 |
| C14 |
C15 |
C16 |
119.4 |
120.0 |
| C15 |
C14 |
H4 |
119.0 |
120.0 |
| C14 |
C15 |
H5 |
120.3 |
120.0 |
| C07 |
C10 |
O11 |
120.1 |
120.2 |
| C10 |
O11 |
C12 |
119.9 |
117.0 |
| N17 |
C20 |
C21 |
103.6 |
109.6 |
| N17 |
C20 |
H17 |
110.4 |
109.6 |
| N17 |
C16 |
O30 |
120.6 |
120.0 |
| C20 |
C21 |
C22 |
123.8 |
119.9 |
| C21 |
C20 |
H17 |
109.7 |
109.7 |
| C20 |
C21 |
H18 |
118.1 |
120.0 |
| O11 |
C12 |
H1 |
109.5 |
109.4 |
| O11 |
C12 |
H2 |
109.5 |
109.4 |
| O11 |
C12 |
H3 |
109.5 |
109.5 |
| C15 |
C16 |
O30 |
120.2 |
120.0 |
| C16 |
C15 |
H5 |
120.3 |
120.0 |
| C21 |
C22 |
C23 |
121.2 |
120.1 |
| C22 |
C21 |
H18 |
118.1 |
120.1 |
| C22 |
C23 |
H21 |
109.5 |
109.5 |
| C22 |
C23 |
H22 |
109.4 |
109.5 |
| C22 |
C23 |
H23 |
109.5 |
109.5 |
| H1 |
C12 |
H2 |
109.4 |
109.4 |
| H1 |
C12 |
H3 |
109.5 |
109.5 |
| H2 |
C12 |
H3 |
109.5 |
109.5 |
| H8 |
N01 |
H9 |
109.5 |
120.0 |
| H10 |
C04 |
H11 |
109.5 |
109.5 |
| H13 |
C09 |
H14 |
109.4 |
109.4 |
| H13 |
C09 |
H15 |
109.5 |
109.5 |
| H14 |
C09 |
H15 |
109.5 |
109.4 |
| H21 |
C23 |
H22 |
109.5 |
109.5 |
| H21 |
C23 |
H23 |
109.5 |
109.5 |
| H22 |
C23 |
H23 |
109.5 |
109.4 |
| H30 |
N35 |
H31 |
109.5 |
120.0 |
| H32 |
C37 |
H33 |
109.5 |
109.4 |
| H32 |
C37 |
H34 |
109.5 |
109.5 |
| H33 |
C37 |
H34 |
109.5 |
109.5 |
Torsion Angles for 53J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C03 |
C02 |
N01 |
N36 |
180.1 |
180.3 |
| N01 |
C02 |
N36 |
C34 |
180.2 |
179.8 |
| N01 |
C02 |
C03 |
C32 |
179.9 |
180.0 |
| H8 |
N01 |
C02 |
H9 |
240.0 |
180.0 |
| N01 |
C02 |
N36 |
C03 |
180.1 |
180.3 |
| N36 |
C02 |
N01 |
H8 |
360.0 |
0.0 |
| N36 |
C02 |
N01 |
H9 |
120.0 |
180.0 |
| N36 |
C02 |
C03 |
C32 |
360.0 |
0.3 |
| N01 |
C02 |
C03 |
N36 |
179.9 |
179.7 |
| C03 |
C02 |
N01 |
H8 |
180.1 |
180.3 |
| C03 |
C02 |
N01 |
H9 |
300.1 |
0.3 |
| C03 |
C02 |
N36 |
C34 |
0.1 |
359.5 |
| C04 |
C03 |
C02 |
C32 |
180.0 |
180.0 |
| C02 |
C03 |
C32 |
N33 |
0.2 |
360.0 |
| C02 |
C03 |
C32 |
H29 |
180.2 |
179.9 |
| N36 |
C34 |
N35 |
H30 |
0.0 |
180.2 |
| N36 |
C34 |
N35 |
H31 |
120.0 |
0.3 |
| C28 |
C27 |
C26 |
H24 |
180.0 |
180.0 |
| C29 |
C28 |
C27 |
H26 |
180.0 |
179.9 |
| C27 |
C28 |
C29 |
H27 |
179.9 |
180.1 |
| C04 |
C03 |
C02 |
N36 |
179.9 |
180.3 |
| C02 |
C03 |
C04 |
C32 |
180.0 |
180.0 |
| C04 |
C03 |
C32 |
N33 |
180.2 |
180.0 |
| C04 |
C03 |
C32 |
H29 |
0.2 |
359.9 |
| C05 |
C04 |
C03 |
C32 |
15.0 |
265.0 |
| C06 |
C05 |
C04 |
C31 |
178.7 |
180.3 |
| C04 |
C05 |
C31 |
H28 |
359.2 |
0.3 |
| C04 |
C05 |
C06 |
C07 |
180.9 |
180.0 |
| C04 |
C05 |
C06 |
H12 |
0.9 |
360.0 |
| H10 |
C04 |
C05 |
H11 |
118.6 |
120.1 |
| C26 |
C25 |
C19 |
H6 |
18.5 |
15.9 |
| C32 |
C03 |
C02 |
N36 |
360.0 |
0.3 |
| N33 |
C32 |
C03 |
H29 |
180.0 |
180.1 |
| C02 |
N36 |
C34 |
N35 |
179.9 |
180.3 |
| H30 |
N35 |
C34 |
H31 |
240.0 |
180.0 |
| C02 |
N36 |
C34 |
N33 |
359.7 |
0.5 |
| C34 |
N33 |
C32 |
H29 |
179.6 |
180.0 |
| C29 |
C28 |
C27 |
H25 |
180.0 |
180.1 |
| C27 |
C28 |
C29 |
H26 |
180.0 |
180.1 |
| C04 |
C05 |
C31 |
C06 |
178.7 |
180.3 |
| C31 |
C05 |
C04 |
H10 |
302.6 |
330.0 |
| C31 |
C05 |
C04 |
H11 |
184.0 |
210.0 |
| C31 |
C05 |
C06 |
C07 |
359.6 |
0.3 |
| C31 |
C05 |
C06 |
H12 |
179.6 |
180.3 |
| C04 |
C05 |
C06 |
C31 |
181.3 |
179.7 |
| C06 |
C05 |
C04 |
H10 |
121.4 |
150.3 |
| C06 |
C05 |
C04 |
H11 |
2.7 |
30.3 |
| C06 |
C05 |
C31 |
H28 |
180.5 |
180.0 |
| C05 |
C06 |
C07 |
O08 |
180.4 |
180.0 |
| C07 |
C06 |
C05 |
H12 |
180.0 |
180.0 |
| C31 |
C13 |
C14 |
H4 |
42.3 |
180.1 |
| N18 |
C19 |
C25 |
H6 |
180.0 |
179.6 |
| C24 |
C25 |
C19 |
H6 |
198.5 |
195.8 |
| C25 |
C24 |
C20 |
H17 |
214.9 |
213.6 |
| C25 |
C19 |
N18 |
H6 |
180.0 |
180.4 |
| C19 |
N18 |
N17 |
C20 |
353.0 |
327.9 |
| C03 |
C32 |
N33 |
H29 |
180.0 |
179.9 |
| C07 |
C06 |
C05 |
C31 |
359.6 |
0.3 |
| C05 |
C06 |
C07 |
H12 |
180.0 |
180.0 |
| C06 |
C07 |
C10 |
O11 |
180.5 |
180.0 |
| C29 |
C24 |
C20 |
H17 |
35.1 |
33.2 |
| N17 |
C20 |
C24 |
H17 |
124.2 |
119.9 |
| C21 |
C20 |
C24 |
H17 |
239.7 |
239.6 |
| C24 |
C20 |
C21 |
H18 |
212.9 |
307.6 |
| C14 |
C13 |
C10 |
O11 |
359.4 |
0.0 |
| C13 |
C14 |
C15 |
C16 |
182.4 |
180.0 |
| C15 |
C14 |
C13 |
H4 |
180.0 |
180.0 |
| C13 |
C14 |
C15 |
H5 |
2.4 |
360.0 |
| C07 |
C10 |
C13 |
O11 |
180.4 |
180.2 |
| C13 |
C10 |
O11 |
C12 |
101.9 |
90.0 |
| N17 |
N18 |
C19 |
H6 |
164.8 |
180.1 |
| N18 |
N17 |
C20 |
C21 |
265.7 |
283.7 |
| N18 |
N17 |
C20 |
H17 |
148.3 |
163.2 |
| N18 |
N17 |
C16 |
O30 |
179.9 |
180.4 |
| C13 |
C14 |
C15 |
H4 |
180.0 |
180.0 |
| C14 |
C15 |
C16 |
O30 |
130.5 |
360.0 |
| C16 |
C15 |
C14 |
H5 |
180.0 |
180.0 |
| C13 |
C10 |
C07 |
O11 |
179.6 |
179.8 |
| C07 |
C10 |
O11 |
C12 |
281.5 |
269.8 |
| O08 |
C07 |
C06 |
H12 |
0.4 |
0.0 |
| O08 |
C07 |
C10 |
O11 |
0.2 |
360.0 |
| C10 |
O11 |
C12 |
H1 |
180.0 |
180.0 |
| C10 |
O11 |
C12 |
H2 |
300.0 |
300.0 |
| C10 |
O11 |
C12 |
H3 |
60.0 |
60.0 |
| C24 |
C20 |
N17 |
H17 |
236.2 |
240.1 |
| C20 |
N17 |
C16 |
O30 |
0.4 |
360.0 |
| N17 |
C20 |
C21 |
C22 |
154.9 |
246.7 |
| C21 |
C20 |
N17 |
H17 |
117.3 |
120.4 |
| N17 |
C20 |
C21 |
H18 |
334.9 |
66.8 |
| C15 |
C16 |
N17 |
O30 |
180.0 |
180.0 |
| N17 |
C16 |
C15 |
H5 |
130.6 |
360.0 |
| C24 |
C20 |
C21 |
H17 |
120.2 |
120.4 |
| N17 |
C20 |
C21 |
H17 |
242.2 |
239.6 |
| C20 |
C21 |
C22 |
C23 |
98.1 |
7.3 |
| C22 |
C21 |
C20 |
H18 |
180.0 |
179.9 |
| H1 |
C12 |
O11 |
H2 |
240.0 |
240.1 |
| H1 |
C12 |
O11 |
H3 |
120.0 |
120.1 |
| H2 |
C12 |
O11 |
H3 |
240.0 |
240.0 |
| C16 |
C15 |
C14 |
H4 |
2.4 |
360.0 |
| C14 |
C15 |
C16 |
H5 |
180.0 |
180.0 |
| N17 |
C16 |
C15 |
O30 |
180.0 |
180.0 |
| O30 |
C16 |
C15 |
H5 |
310.5 |
180.0 |
| C37 |
C22 |
C21 |
H18 |
79.7 |
7.3 |
| C37 |
C22 |
C23 |
H21 |
180.0 |
185.5 |
| C37 |
C22 |
C23 |
H22 |
300.0 |
305.5 |
| C37 |
C22 |
C23 |
H23 |
60.0 |
65.5 |
| C22 |
C21 |
C20 |
H17 |
272.7 |
7.1 |
| C20 |
C21 |
C22 |
H18 |
180.0 |
180.1 |
| C21 |
C22 |
C23 |
H21 |
341.5 |
5.5 |
| C21 |
C22 |
C23 |
H22 |
101.5 |
125.5 |
| C21 |
C22 |
C23 |
H23 |
221.6 |
245.5 |
| C23 |
C22 |
C21 |
H18 |
278.1 |
187.3 |
| H21 |
C23 |
C22 |
H22 |
240.0 |
240.0 |
| H21 |
C23 |
C22 |
H23 |
120.0 |
120.0 |
| H22 |
C23 |
C22 |
H23 |
240.0 |
240.0 |
| O11 |
C12 |
H1 |
H2 |
120.0 |
119.9 |
| O11 |
C12 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C12 |
H1 |
H3 |
120.0 |
120.0 |
| O11 |
C12 |
H2 |
H1 |
240.0 |
240.1 |
| O11 |
C12 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C12 |
H2 |
H3 |
240.0 |
239.9 |
| O11 |
C12 |
H3 |
H1 |
120.0 |
120.0 |
| O11 |
C12 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C12 |
H3 |
H2 |
120.0 |
120.0 |
| C13 |
C14 |
H4 |
C15 |
180.0 |
180.0 |
| H4 |
C14 |
C15 |
C16 |
2.4 |
360.0 |
| H4 |
C14 |
C15 |
H5 |
182.4 |
180.0 |
| C14 |
C15 |
H5 |
C16 |
180.0 |
180.0 |
| H5 |
C15 |
C14 |
H4 |
182.4 |
180.0 |
| H5 |
C15 |
C16 |
O30 |
310.5 |
180.0 |
| H6 |
C19 |
N18 |
N17 |
164.8 |
180.1 |
| H8 |
N01 |
C02 |
N36 |
360.0 |
0.0 |
| H8 |
N01 |
C02 |
C03 |
180.1 |
180.3 |
| C02 |
N01 |
H8 |
H9 |
120.0 |
180.0 |
| H9 |
N01 |
C02 |
N36 |
120.0 |
180.0 |
| H9 |
N01 |
C02 |
C03 |
300.1 |
0.3 |
| C02 |
N01 |
H9 |
H8 |
239.9 |
180.0 |
| H10 |
C04 |
C03 |
C32 |
135.7 |
25.0 |
| H10 |
C04 |
C05 |
C31 |
302.6 |
330.0 |
| H10 |
C04 |
C05 |
C06 |
121.4 |
150.3 |
| C05 |
C04 |
H10 |
H11 |
242.1 |
239.9 |
| H11 |
C04 |
C03 |
C32 |
254.3 |
145.0 |
| H11 |
C04 |
C05 |
C31 |
184.0 |
210.0 |
| H11 |
C04 |
C05 |
C06 |
2.7 |
30.3 |
| C05 |
C04 |
H11 |
H10 |
117.9 |
120.0 |
| H12 |
C06 |
C05 |
C31 |
179.6 |
180.3 |
| C05 |
C06 |
H12 |
C07 |
180.0 |
180.0 |
| H12 |
C06 |
C07 |
O08 |
0.4 |
0.0 |
| H14 |
C09 |
H13 |
H15 |
120.0 |
119.9 |
| H13 |
C09 |
H14 |
H15 |
240.0 |
240.0 |
| H13 |
C09 |
H15 |
H14 |
119.9 |
119.9 |
| N17 |
C20 |
H17 |
C21 |
113.5 |
120.4 |
| H17 |
C20 |
C21 |
C22 |
272.7 |
7.1 |
| H17 |
C20 |
C21 |
H18 |
92.7 |
187.2 |
| C20 |
C21 |
H18 |
C22 |
180.0 |
179.9 |
| H18 |
C21 |
C20 |
H17 |
92.7 |
187.2 |
| H18 |
C21 |
C22 |
C23 |
278.1 |
187.3 |
| C22 |
C23 |
H21 |
H22 |
120.0 |
120.0 |
| C22 |
C23 |
H21 |
H23 |
240.0 |
240.0 |
| H22 |
C23 |
H21 |
H23 |
120.0 |
120.0 |
| C22 |
C23 |
H22 |
H21 |
240.0 |
240.0 |
| C22 |
C23 |
H22 |
H23 |
120.0 |
120.0 |
| H21 |
C23 |
H22 |
H23 |
240.0 |
240.0 |
| C22 |
C23 |
H23 |
H21 |
120.0 |
120.0 |
| C22 |
C23 |
H23 |
H22 |
240.0 |
240.0 |
| H21 |
C23 |
H23 |
H22 |
120.0 |
120.0 |
| H25 |
C27 |
C26 |
H24 |
360.0 |
359.9 |
| H25 |
C27 |
C28 |
C29 |
180.0 |
180.1 |
| H25 |
C27 |
C28 |
H26 |
0.0 |
0.2 |
| C27 |
C28 |
H26 |
C29 |
180.0 |
179.9 |
| H26 |
C28 |
C27 |
H25 |
0.0 |
0.2 |
| H26 |
C28 |
C29 |
H27 |
359.9 |
0.0 |
| H27 |
C29 |
C28 |
H26 |
359.9 |
0.0 |
| C03 |
C32 |
H29 |
N33 |
180.0 |
180.1 |
| C34 |
N35 |
H30 |
H31 |
120.0 |
180.0 |
| C34 |
N35 |
H31 |
H30 |
240.0 |
180.0 |
| H33 |
C37 |
H32 |
H34 |
120.0 |
120.0 |
| H32 |
C37 |
H33 |
H34 |
240.0 |
240.0 |
| H32 |
C37 |
H34 |
H33 |
120.0 |
119.9 |