PDB Chemical Component 53I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 53I
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N01 |
C02 |
1.449 |
1.385 |
| C02 |
N36 |
1.370 |
1.329 |
| C02 |
C03 |
1.393 |
1.397 |
| N36 |
C34 |
1.362 |
1.325 |
| C04 |
C03 |
1.516 |
1.507 |
| C04 |
C05 |
1.509 |
1.507 |
| C03 |
C32 |
1.423 |
1.381 |
| C34 |
N35 |
1.438 |
1.384 |
| C34 |
N33 |
1.342 |
1.325 |
| C05 |
C31 |
1.382 |
1.377 |
| C05 |
C06 |
1.405 |
1.385 |
| C37 |
C22 |
1.533 |
1.507 |
| C31 |
C13 |
1.436 |
1.400 |
| C06 |
C07 |
1.436 |
1.385 |
| C32 |
N33 |
1.398 |
1.326 |
| C19 |
N18 |
1.420 |
1.301 |
| C19 |
C25 |
1.475 |
1.474 |
| N18 |
N17 |
1.360 |
1.403 |
| C21 |
C22 |
1.362 |
1.309 |
| C21 |
C20 |
1.508 |
1.506 |
| C13 |
C14 |
1.495 |
1.469 |
| C13 |
C10 |
1.403 |
1.403 |
| C22 |
C23 |
1.534 |
1.507 |
| C09 |
O08 |
1.417 |
1.429 |
| C07 |
C10 |
1.385 |
1.391 |
| C07 |
O08 |
1.404 |
1.360 |
| C14 |
C15 |
1.380 |
1.349 |
| C10 |
O11 |
1.416 |
1.358 |
| C25 |
C26 |
1.440 |
1.395 |
| C25 |
C24 |
1.328 |
1.399 |
| N17 |
C20 |
1.451 |
1.469 |
| N17 |
C16 |
1.481 |
1.348 |
| C26 |
C27 |
1.419 |
1.380 |
| C20 |
C24 |
1.513 |
1.508 |
| C12 |
O11 |
1.377 |
1.428 |
| C15 |
C16 |
1.556 |
1.462 |
| C24 |
C29 |
1.469 |
1.377 |
| C16 |
O30 |
1.253 |
1.218 |
| C27 |
C28 |
1.379 |
1.384 |
| C29 |
C28 |
1.392 |
1.385 |
| C19 |
H1 |
1.080 |
1.079 |
| C26 |
H2 |
1.080 |
1.080 |
| C27 |
H3 |
1.080 |
1.080 |
| C28 |
H4 |
1.080 |
1.080 |
| C29 |
H5 |
1.080 |
1.080 |
| C20 |
H6 |
1.100 |
1.090 |
| C21 |
H7 |
1.080 |
1.081 |
| C23 |
H8 |
1.100 |
1.090 |
| C23 |
H9 |
1.100 |
1.090 |
| C23 |
H10 |
1.100 |
1.090 |
| C37 |
H11 |
1.100 |
1.089 |
| C37 |
H12 |
1.100 |
1.090 |
| C37 |
H13 |
1.100 |
1.091 |
| C15 |
H14 |
1.080 |
1.080 |
| C14 |
H15 |
1.080 |
1.081 |
| C12 |
H16 |
1.100 |
1.090 |
| C12 |
H17 |
1.100 |
1.090 |
| C12 |
H18 |
1.100 |
1.089 |
| C09 |
H19 |
1.101 |
1.089 |
| C09 |
H20 |
1.099 |
1.089 |
| C09 |
H21 |
1.100 |
1.090 |
| C06 |
H22 |
1.080 |
1.080 |
| C04 |
H23 |
1.100 |
1.089 |
| C04 |
H24 |
1.100 |
1.090 |
| C32 |
H25 |
1.081 |
1.080 |
| N35 |
H26 |
1.000 |
0.970 |
| N35 |
H27 |
1.000 |
0.970 |
| N01 |
H28 |
1.000 |
0.970 |
| N01 |
H29 |
1.000 |
0.970 |
| C31 |
H30 |
1.080 |
1.080 |
Bond Angles for 53I
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C04 |
C03 |
C32 |
125.4 |
120.7 |
| C03 |
C04 |
H23 |
107.7 |
109.5 |
| C03 |
C04 |
H24 |
107.7 |
109.5 |
| C04 |
C05 |
C31 |
119.3 |
119.8 |
| C03 |
C32 |
N33 |
119.0 |
119.3 |
| C03 |
C32 |
H25 |
120.5 |
120.4 |
| C34 |
N35 |
H26 |
109.5 |
120.0 |
| C34 |
N35 |
H27 |
109.5 |
120.0 |
| C05 |
C31 |
H30 |
119.8 |
120.0 |
| C05 |
C06 |
H22 |
120.1 |
119.8 |
| N33 |
C32 |
H25 |
120.5 |
120.3 |
| C19 |
C25 |
C26 |
121.7 |
120.8 |
| C19 |
C25 |
C24 |
119.0 |
119.4 |
| C25 |
C19 |
H1 |
120.9 |
120.2 |
| N18 |
N17 |
C20 |
117.9 |
119.4 |
| C21 |
C22 |
C23 |
121.5 |
120.0 |
| C22 |
C21 |
H7 |
119.8 |
120.0 |
| C21 |
C20 |
H6 |
108.8 |
109.8 |
| C13 |
C14 |
H15 |
118.7 |
120.0 |
| C13 |
C10 |
O11 |
121.1 |
120.2 |
| C22 |
C23 |
H8 |
109.5 |
109.5 |
| C22 |
C23 |
H9 |
109.5 |
109.5 |
| C22 |
C23 |
H10 |
109.4 |
109.5 |
| C14 |
C15 |
H14 |
119.9 |
120.1 |
| C26 |
C25 |
C24 |
119.3 |
119.8 |
| C25 |
C26 |
C27 |
120.2 |
119.6 |
| C25 |
C26 |
H2 |
119.9 |
120.2 |
| C25 |
C24 |
C29 |
120.7 |
120.0 |
| N17 |
C20 |
C24 |
110.5 |
108.5 |
| N17 |
C20 |
H6 |
109.6 |
109.6 |
| C26 |
C27 |
C28 |
120.3 |
120.3 |
| C27 |
C26 |
H2 |
119.9 |
120.2 |
| C26 |
C27 |
H3 |
119.9 |
119.9 |
| C24 |
C29 |
H5 |
120.1 |
120.0 |
| C28 |
C27 |
H3 |
119.8 |
119.9 |
| C27 |
C28 |
H4 |
120.2 |
119.8 |
| C29 |
C28 |
H4 |
120.1 |
119.8 |
| H8 |
C23 |
H9 |
109.5 |
109.5 |
| H8 |
C23 |
H10 |
109.5 |
109.4 |
| H9 |
C23 |
H10 |
109.5 |
109.4 |
| H11 |
C37 |
H12 |
109.5 |
109.5 |
| H11 |
C37 |
H13 |
109.5 |
109.5 |
| H12 |
C37 |
H13 |
109.4 |
109.5 |
| H16 |
C12 |
H17 |
109.5 |
109.4 |
| H16 |
C12 |
H18 |
109.5 |
109.5 |
| H17 |
C12 |
H18 |
109.5 |
109.4 |
| H19 |
C09 |
H20 |
109.5 |
109.5 |
| H19 |
C09 |
H21 |
109.5 |
109.4 |
| H20 |
C09 |
H21 |
109.5 |
109.5 |
| H23 |
C04 |
H24 |
109.5 |
109.5 |
| H26 |
N35 |
H27 |
109.5 |
120.0 |
| H28 |
N01 |
H29 |
109.5 |
120.0 |
Torsion Angles for 53I
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C02 |
C03 |
C04 |
H23 |
311.7 |
324.8 |
| C02 |
C03 |
C04 |
H24 |
69.7 |
204.7 |
| C02 |
C03 |
C32 |
H25 |
180.6 |
180.3 |
| N36 |
C34 |
N35 |
H26 |
0.0 |
180.0 |
| N36 |
C34 |
N35 |
H27 |
120.0 |
0.1 |
| C03 |
C04 |
C05 |
C31 |
55.6 |
90.0 |
| C04 |
C03 |
C32 |
N33 |
179.0 |
180.0 |
| C04 |
C03 |
C32 |
H25 |
359.0 |
360.0 |
| H23 |
C04 |
C03 |
H24 |
242.1 |
120.0 |
| C04 |
C05 |
C31 |
H30 |
359.2 |
359.5 |
| C04 |
C05 |
C06 |
H22 |
1.0 |
0.2 |
| C32 |
C03 |
C04 |
H23 |
133.3 |
145.0 |
| C32 |
C03 |
C04 |
H24 |
251.3 |
25.0 |
| N33 |
C32 |
C03 |
H25 |
180.0 |
180.0 |
| H26 |
N35 |
C34 |
H27 |
240.0 |
179.9 |
| C34 |
N33 |
C32 |
H25 |
179.6 |
180.0 |
| C31 |
C05 |
C06 |
H22 |
179.4 |
179.7 |
| C37 |
C22 |
C21 |
H7 |
2.0 |
354.3 |
| C37 |
C22 |
C23 |
H8 |
180.0 |
265.8 |
| C37 |
C22 |
C23 |
H9 |
300.0 |
25.9 |
| C37 |
C22 |
C23 |
H10 |
60.0 |
145.8 |
| C31 |
C13 |
C14 |
H15 |
0.5 |
179.7 |
| C03 |
C32 |
N33 |
H25 |
180.0 |
180.0 |
| C19 |
N18 |
N17 |
C20 |
26.0 |
32.0 |
| C26 |
C25 |
C19 |
C24 |
180.0 |
179.9 |
| C19 |
C25 |
C26 |
C27 |
180.3 |
180.1 |
| C19 |
C25 |
C26 |
H2 |
0.3 |
0.1 |
| C19 |
C25 |
C24 |
C29 |
179.7 |
179.8 |
| N18 |
N17 |
C20 |
C24 |
311.1 |
316.2 |
| N18 |
N17 |
C20 |
H6 |
191.2 |
196.3 |
| C22 |
C21 |
C20 |
H6 |
358.4 |
354.2 |
| C21 |
C22 |
C23 |
H8 |
10.4 |
85.8 |
| C21 |
C22 |
C23 |
H9 |
130.4 |
205.9 |
| C21 |
C22 |
C23 |
H10 |
250.4 |
325.8 |
| N17 |
C20 |
C21 |
H6 |
119.8 |
120.5 |
| C13 |
C14 |
C15 |
H14 |
5.3 |
0.0 |
| C10 |
C13 |
C14 |
H15 |
181.3 |
0.0 |
| C23 |
C22 |
C21 |
H7 |
171.6 |
174.3 |
| H8 |
C23 |
C22 |
H9 |
240.0 |
239.9 |
| H8 |
C23 |
C22 |
H10 |
120.0 |
120.0 |
| H9 |
C23 |
C22 |
H10 |
240.0 |
240.0 |
| C19 |
C25 |
C26 |
C24 |
180.0 |
180.1 |
| C26 |
C25 |
C19 |
H1 |
335.0 |
344.6 |
| C26 |
C25 |
C24 |
C29 |
359.7 |
359.9 |
| C25 |
C26 |
C27 |
C28 |
360.0 |
0.1 |
| C27 |
C26 |
C25 |
H2 |
180.0 |
180.0 |
| C25 |
C26 |
C27 |
H3 |
180.0 |
180.0 |
| C19 |
C25 |
C24 |
C26 |
180.0 |
179.9 |
| C24 |
C25 |
C19 |
H1 |
155.0 |
164.7 |
| C24 |
C25 |
C26 |
C27 |
0.3 |
0.0 |
| C24 |
C25 |
C26 |
H2 |
180.2 |
180.0 |
| N17 |
C20 |
C24 |
C25 |
35.0 |
27.3 |
| C25 |
C24 |
C29 |
H5 |
180.1 |
180.1 |
| C21 |
C20 |
N17 |
H6 |
240.7 |
239.4 |
| C27 |
C26 |
C25 |
C24 |
0.3 |
0.0 |
| C25 |
C26 |
C27 |
H2 |
180.0 |
180.0 |
| C28 |
C27 |
C26 |
H3 |
180.0 |
180.1 |
| C26 |
C27 |
C28 |
H4 |
179.8 |
180.0 |
| N17 |
C20 |
C24 |
H6 |
239.6 |
240.2 |
| C20 |
C24 |
C29 |
H5 |
360.0 |
0.3 |
| N17 |
C20 |
C24 |
C29 |
215.1 |
207.1 |
| C24 |
C29 |
C28 |
H4 |
180.1 |
180.0 |
| C28 |
C27 |
C26 |
H2 |
180.0 |
180.1 |
| C26 |
C27 |
C28 |
H3 |
180.0 |
179.9 |
| C29 |
C28 |
C27 |
H4 |
180.0 |
179.9 |
| C25 |
C24 |
C29 |
C28 |
0.1 |
0.1 |
| C29 |
C28 |
C27 |
H3 |
179.8 |
180.0 |
| C27 |
C28 |
C29 |
H4 |
180.0 |
180.1 |
| H1 |
C19 |
C25 |
C26 |
335.0 |
344.6 |
| H1 |
C19 |
C25 |
C24 |
155.0 |
164.7 |
| H2 |
C26 |
C25 |
C24 |
180.2 |
180.0 |
| C25 |
C26 |
H2 |
C27 |
180.0 |
180.0 |
| H2 |
C26 |
C27 |
C28 |
180.0 |
180.1 |
| H2 |
C26 |
C27 |
H3 |
360.0 |
0.0 |
| C26 |
C27 |
H3 |
C28 |
180.0 |
180.1 |
| H3 |
C27 |
C26 |
H2 |
360.0 |
0.0 |
| H3 |
C27 |
C28 |
H4 |
359.8 |
0.0 |
| H4 |
C28 |
C27 |
H3 |
359.8 |
0.0 |
| H5 |
C29 |
C28 |
H4 |
0.1 |
360.0 |
| N17 |
C20 |
H6 |
C24 |
120.9 |
119.1 |
| H7 |
C21 |
C22 |
C23 |
171.6 |
174.3 |
| H7 |
C21 |
C20 |
H6 |
178.4 |
174.2 |
| C22 |
C23 |
H8 |
H9 |
120.0 |
120.1 |
| C22 |
C23 |
H8 |
H10 |
240.0 |
240.0 |
| H9 |
C23 |
H8 |
H10 |
120.0 |
119.9 |
| C22 |
C23 |
H9 |
H8 |
240.0 |
239.9 |
| C22 |
C23 |
H9 |
H10 |
120.0 |
120.0 |
| H8 |
C23 |
H9 |
H10 |
240.0 |
240.1 |
| C22 |
C23 |
H10 |
H8 |
120.0 |
120.0 |
| C22 |
C23 |
H10 |
H9 |
240.0 |
240.0 |
| H8 |
C23 |
H10 |
H9 |
120.0 |
120.0 |
| H12 |
C37 |
H11 |
H13 |
120.0 |
120.0 |
| H11 |
C37 |
H12 |
H13 |
240.0 |
240.0 |
| H11 |
C37 |
H13 |
H12 |
120.0 |
120.1 |
| H15 |
C14 |
C15 |
H14 |
185.4 |
180.0 |
| H17 |
C12 |
H16 |
H18 |
120.0 |
119.9 |
| H16 |
C12 |
H17 |
H18 |
240.0 |
240.0 |
| H16 |
C12 |
H18 |
H17 |
120.0 |
119.9 |
| H20 |
C09 |
H19 |
H21 |
120.0 |
120.0 |
| H19 |
C09 |
H20 |
H21 |
240.0 |
240.0 |
| H19 |
C09 |
H21 |
H20 |
120.0 |
120.1 |
| H23 |
C04 |
C03 |
C32 |
133.3 |
145.0 |
| C03 |
C04 |
H23 |
H24 |
116.8 |
240.0 |
| H23 |
C04 |
C05 |
C31 |
294.6 |
210.0 |
| H24 |
C04 |
C03 |
C32 |
251.3 |
25.0 |
| C03 |
C04 |
H24 |
H23 |
243.2 |
120.0 |
| H24 |
C04 |
C05 |
C31 |
176.7 |
330.0 |
| C03 |
C32 |
H25 |
N33 |
180.0 |
180.0 |
| C34 |
N35 |
H26 |
H27 |
120.0 |
180.1 |
| C34 |
N35 |
H27 |
H26 |
240.0 |
179.9 |