PDB Chemical Component 53A

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 53A

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	N3	1.401	1.366
N1	C6	1.399	1.386
N1	C1	1.325	1.379
N3	N4	1.419	1.364
C4	C5	1.498	1.471
C4	S1	1.701	1.762
C4	N2	1.352	1.320
C5	C6	1.491	1.405
C5	C11	1.394	1.394
C6	C12	1.397	1.388
O2	C9	1.223	1.208
N4	C3	1.355	1.418
O3	C10	1.224	1.207
C10	C13	1.506	1.507
C10	C7	1.510	1.507
C7	C9	1.505	1.508
C7	S1	1.775	1.809
C9	O5	1.461	1.342
O5	C15	1.431	1.452
C15	C19	1.513	1.530
N2	C1	1.357	1.339
C11	C16	1.400	1.379
C16	C17	1.398	1.387
C17	C12	1.399	1.380
C3	C1	1.479	1.396
C3	C8	1.487	1.396
C8	O1	1.213	1.220
C8	O4	1.462	1.353
O4	C14	1.438	1.429
C14	C18	1.518	1.530
N3	HN3	1.000	1.009
N4	HN4	1.000	0.971
C13	H13	1.100	1.090
C13	H13A	1.100	1.089
C13	H13B	1.100	1.090
C7	H7	1.100	1.090
C15	H15	1.100	1.090
C15	H15A	1.100	1.090
C19	H19	1.100	1.089
C19	H19A	1.100	1.089
C19	H19B	1.100	1.090
C11	H11	1.080	1.080
C16	H16	1.080	1.080
C17	H17	1.080	1.080
C12	H12	1.080	1.079
C14	H14	1.099	1.089
C14	H14A	1.100	1.091
C18	H18	1.100	1.090
C18	H18A	1.099	1.090
C18	H18B	1.100	1.090

Bond Angles for 53A

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N3	N1	C6	126.2	131.1
N3	N1	C1	113.7	109.0
N1	N3	N4	105.0	109.0
N1	N3	HN3	110.9	111.0
C6	N1	C1	120.2	119.8
N1	C6	C5	117.2	118.8
N1	C6	C12	123.4	121.5
N1	C1	N2	126.3	121.9
N1	C1	C3	104.1	107.5
N3	N4	C3	108.4	107.5
N4	N3	HN3	111.0	111.0
N3	N4	HN4	109.8	126.2
C5	C4	S1	122.8	120.6
C5	C4	N2	118.4	118.9
C4	C5	C6	117.5	118.4
C4	C5	C11	123.4	121.7
S1	C4	N2	118.8	120.5
C4	S1	C7	111.3	100.0
C4	N2	C1	120.3	122.2
C6	C5	C11	119.1	120.0
C5	C6	C12	119.4	119.7
C5	C11	C16	119.6	119.4
C5	C11	H11	120.2	120.3
C6	C12	C17	119.3	119.7
C6	C12	H12	120.3	120.2
O2	C9	C7	120.3	120.0
O2	C9	O5	119.7	120.1
N4	C3	C1	108.8	106.9
N4	C3	C8	134.0	126.6
C3	N4	HN4	109.8	126.2
O3	C10	C13	120.2	120.0
O3	C10	C7	118.9	120.0
C13	C10	C7	120.8	120.0
C10	C13	H13	109.5	109.5
C10	C13	H13A	109.5	109.5
C10	C13	H13B	109.5	109.5
C10	C7	C9	111.1	109.5
C10	C7	S1	110.9	109.5
C10	C7	H7	107.8	109.5
C9	C7	S1	110.7	109.4
C7	C9	O5	120.0	120.0
C9	C7	H7	108.0	109.5
S1	C7	H7	108.2	109.5
C9	O5	C15	122.3	117.0
O5	C15	C19	110.1	109.5
O5	C15	H15	109.3	109.5
O5	C15	H15A	109.1	109.5
C19	C15	H15	109.3	109.4
C19	C15	H15A	109.1	109.4
C15	C19	H19	109.5	109.5
C15	C19	H19A	109.5	109.5
C15	C19	H19B	109.4	109.4
N2	C1	C3	129.7	130.6
C11	C16	C17	121.2	120.5
C16	C11	H11	120.2	120.3
C11	C16	H16	119.4	119.7
C16	C17	C12	121.4	120.6
C17	C16	H16	119.4	119.7
C16	C17	H17	119.3	119.7
C12	C17	H17	119.3	119.7
C17	C12	H12	120.3	120.2
C1	C3	C8	117.2	126.5
C3	C8	O1	119.7	120.0
C3	C8	O4	120.7	120.0
O1	C8	O4	119.6	120.0
C8	O4	C14	122.2	117.0
O4	C14	C18	112.4	109.5
O4	C14	H14	108.5	109.5
O4	C14	H14A	107.9	109.5
C18	C14	H14	108.5	109.5
C18	C14	H14A	107.8	109.5
C14	C18	H18	109.5	109.5
C14	C18	H18A	109.5	109.5
C14	C18	H18B	109.4	109.5
H13	C13	H13A	109.5	109.4
H13	C13	H13B	109.4	109.5
H13A	C13	H13B	109.5	109.5
H15	C15	H15A	109.9	109.5
H19	C19	H19A	109.5	109.5
H19	C19	H19B	109.5	109.5
H19A	C19	H19B	109.5	109.4
H14	C14	H14A	111.8	109.4
H18	C18	H18A	109.4	109.4
H18	C18	H18B	109.5	109.4
H18A	C18	H18B	109.5	109.5

Torsion Angles for 53A

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	N1	N3	C1	180.3	179.7
N3	N1	C6	C5	179.7	180.0
N3	N1	C6	C12	359.7	0.0
N3	N1	C1	N2	179.9	180.0
N3	N1	C1	C3	359.7	359.6
N1	N3	N4	C3	359.7	360.0
N4	N3	N1	HN3	240.0	237.4
N1	N3	N4	HN4	119.7	180.0
N3	N1	C6	C1	179.7	180.3
C6	N1	N3	N4	180.7	180.0
C6	N1	N3	HN3	300.7	302.6
C6	N1	C1	N2	359.7	0.3
C6	N1	C1	C3	179.5	179.8
C4	C5	C6	N1	0.2	0.0
N1	C6	C5	C11	179.8	180.4
C5	C6	N1	C12	180.0	180.0
N1	C6	C12	C17	180.2	180.0
N1	C6	C12	H12	0.2	359.9
N3	N1	C1	C6	180.3	179.7
C1	N1	N3	N4	0.4	0.3
C1	N1	N3	HN3	120.4	122.8
C1	N1	C6	C5	360.0	359.7
C1	N1	C6	C12	180.0	179.7
C4	N2	C1	N1	0.5	0.2
N4	C3	C1	N1	0.0	0.4
N2	C1	N1	C3	180.2	180.4
N1	C1	C3	C8	179.8	180.2
N4	N3	N1	C6	180.7	180.0
N4	N3	N1	C1	0.4	0.3
N1	N3	N4	HN3	120.0	122.5
N3	N4	C3	C1	0.2	359.7
N3	N4	C3	C8	180.5	180.0
C3	N4	N3	HN4	240.0	180.0
N1	C6	C5	C4	0.2	0.0
S1	C4	C5	N2	179.9	179.6
C5	C4	S1	C7	140.0	180.0
C5	C4	N2	C1	359.8	359.5
C6	C5	C4	C11	179.6	180.4
C4	C5	C6	C12	180.2	180.0
C4	C5	C11	C16	179.8	180.0
C4	C5	C11	H11	359.8	360.0
C5	C4	S1	N2	180.1	180.4
S1	C4	C5	C6	179.8	180.0
S1	C4	C5	C11	0.2	359.6
S1	C4	N2	C1	179.9	179.9
C10	C7	S1	C4	161.1	295.0
C9	C7	S1	C4	37.3	175.0
C4	S1	C7	H7	279.1	55.0
N1	C1	N2	C4	0.5	0.2
C5	C4	N2	S1	179.9	179.6
N2	C4	C5	C6	359.9	0.4
N2	C4	C5	C11	180.4	180.0
N2	C4	S1	C7	319.8	359.6
C4	N2	C1	C3	180.7	180.7
C5	C6	N1	C1	360.0	359.7
N1	C6	C5	C12	180.0	180.0
C6	C5	C4	S1	179.8	180.0
C6	C5	C4	N2	359.9	0.4
C4	C5	C6	C11	180.4	179.6
C6	C5	C11	C16	0.2	359.6
C6	C5	C11	H11	180.2	179.6
C5	C6	C12	C17	0.2	0.0
C5	C6	C12	H12	180.2	180.0
C11	C5	C4	S1	0.2	359.6
C11	C5	C4	N2	180.4	180.0
C4	C5	C11	C6	179.6	180.4
C11	C5	C6	C12	359.8	0.4
C5	C11	C16	C17	359.9	359.9
C16	C11	C5	H11	180.0	180.1
C5	C11	C16	H16	179.9	180.0
C12	C6	N1	C1	180.0	179.7
N1	C6	C12	C5	180.0	180.0
C12	C6	C5	C11	359.8	0.4
C16	C17	C12	C6	359.8	359.5
C6	C12	C17	H17	179.8	179.9
C17	C12	C6	H12	180.0	180.1
C10	C7	C9	O2	123.1	265.0
O2	C9	C7	S1	246.8	25.0
C7	C9	O2	O5	178.9	180.0
O2	C9	C7	H7	5.1	145.0
O2	C9	O5	C15	287.0	360.0
N1	C1	C3	N4	0.0	0.4
C3	N4	N3	HN3	239.7	237.5
N3	N4	C3	HN4	120.0	180.0
N2	C1	C3	N4	179.8	179.9
C1	C3	N4	C8	179.7	179.8
N4	C3	C8	O1	141.6	180.0
N4	C3	C8	O4	322.5	0.1
C13	C10	O3	C7	178.9	180.0
O3	C10	C13	H13	87.4	90.0
O3	C10	C13	H13A	207.4	210.0
O3	C10	C13	H13B	327.4	330.0
O3	C10	C7	C9	324.4	265.0
O3	C10	C7	S1	200.8	145.1
O3	C10	C7	H7	82.6	25.0
O3	C10	C13	C7	181.1	180.0
C13	C10	C7	C9	145.5	85.0
C13	C10	C7	S1	21.9	325.0
C13	C10	C7	H7	263.7	205.0
H13	C13	C10	H13A	240.0	240.0
H13	C13	C10	H13B	120.0	120.0
H13A	C13	C10	H13B	240.0	240.0
C4	S1	C7	C10	161.1	295.0
O2	C9	C7	C10	123.1	265.0
O3	C10	C7	C13	178.9	180.0
C7	C10	C13	H13	266.3	270.0
C7	C10	C13	H13A	26.3	30.0
C7	C10	C13	H13B	146.3	150.0
C9	C7	C10	S1	123.6	120.0
C10	C7	C9	O5	302.0	85.0
C9	C7	C10	H7	241.8	240.0
S1	C7	C10	H7	118.3	120.0
C4	S1	C7	C9	37.3	175.0
O2	C9	C7	O5	181.1	180.0
C10	C7	C9	S1	236.3	240.0
C10	C7	C9	H7	118.0	120.0
S1	C7	C9	H7	241.7	240.0
C7	C9	O5	C15	108.2	180.0
C7	S1	C4	N2	319.8	359.6
C10	C7	S1	C9	123.8	120.0
C10	C7	S1	H7	242.0	240.0
S1	C7	C9	O5	65.7	205.0
C9	C7	S1	H7	118.2	120.0
O2	C9	O5	C7	178.9	180.0
O5	C9	C7	S1	65.7	205.0
O5	C9	C7	H7	184.0	325.0
C9	O5	C15	C19	219.0	180.0
C9	O5	C15	H15	339.0	300.0
C9	O5	C15	H15A	99.2	60.0
C19	C15	O5	H15	240.0	240.0
C19	C15	O5	H15A	119.7	119.9
O5	C15	C19	H19	237.8	180.0
O5	C15	C19	H19A	357.8	300.1
O5	C15	C19	H19B	117.8	60.0
H15	C15	O5	H15A	239.7	239.9
O5	C15	C19	H15	120.0	120.0
O5	C15	C19	H15A	240.3	240.0
H15	C15	C19	H15A	120.2	120.0
H19	C19	C15	H19A	240.0	239.9
H19	C19	C15	H19B	120.0	120.0
H19A	C19	C15	H19B	240.0	240.1
N1	C1	N2	C3	179.7	179.5
N4	C3	C1	N2	179.8	179.9
N2	C1	C3	C8	359.5	359.7
C5	C11	C16	H11	180.0	179.9
C11	C16	C17	C12	0.1	0.5
C17	C16	C11	H16	180.0	179.9
C11	C16	C17	H17	180.1	180.1
C6	C12	C17	C16	359.8	359.5
C17	C16	C11	H11	179.9	180.0
C11	C16	C17	H16	180.0	180.1
C12	C17	C16	H17	180.0	180.4
C16	C17	C12	H12	179.8	179.6
C6	C12	C17	H12	180.0	179.9
C12	C17	C16	H16	180.1	180.4
C16	C17	C12	H17	180.0	179.6
N1	C1	C3	N2	180.2	180.5
N4	C3	C1	C8	180.3	180.2
C1	C3	N4	HN4	240.2	179.8
C1	C3	C8	O1	322.0	0.3
C1	C3	C8	O4	142.8	180.3
N4	C3	C8	C1	179.6	179.7
C8	C3	N4	HN4	60.5	360.0
O1	C8	C3	O4	179.2	180.0
C3	C8	O4	C14	185.5	180.0
C3	C8	O1	O4	180.8	180.0
O1	C8	O4	C14	6.3	0.0
C3	C8	O4	O1	179.2	180.0
C8	O4	C14	C18	48.6	180.0
C8	O4	C14	H14	168.6	300.0
C8	O4	C14	H14A	289.9	60.0
C18	C14	O4	H14	240.0	240.0
C18	C14	O4	H14A	118.7	120.0
O4	C14	C18	H18	243.9	300.0
O4	C14	C18	H18A	3.9	60.0
O4	C14	C18	H18B	123.9	180.0
H14	C14	O4	H14A	238.7	240.0
O4	C14	C18	H14	120.0	120.1
O4	C14	C18	H14A	241.3	240.0
H14	C14	C18	H14A	121.3	120.0
H18	C18	C14	H18A	240.0	240.0
H18	C18	C14	H18B	120.0	120.0
H18A	C18	C14	H18B	240.0	240.0
HN3	N3	N1	C6	300.7	302.6
HN3	N3	N1	C1	120.4	122.8
N1	N3	HN3	N4	243.6	238.6
HN3	N3	N4	C3	239.7	237.5
HN3	N3	N4	HN4	359.7	57.5
N3	N4	HN4	C3	240.8	180.0
HN4	N4	N3	HN3	359.7	57.5
HN4	N4	C3	C1	240.2	179.8
HN4	N4	C3	C8	60.5	360.0
H13	C13	C10	C7	266.3	270.0
C10	C13	H13	H13A	120.0	120.0
C10	C13	H13	H13B	240.0	240.0
H13A	C13	H13	H13B	120.0	120.0
H13A	C13	C10	C7	26.3	30.0
C10	C13	H13A	H13	239.9	240.0
C10	C13	H13A	H13B	120.0	120.0
H13	C13	H13A	H13B	240.1	240.0
H13B	C13	C10	C7	146.3	150.0
C10	C13	H13B	H13	120.0	120.0
C10	C13	H13B	H13A	240.0	240.0
H13	C13	H13B	H13A	120.0	120.0
C10	C7	H7	C9	239.9	240.0
C10	C7	H7	S1	120.0	120.0
C9	C7	H7	S1	240.1	240.0
H7	C7	C9	O5	184.0	325.0
O5	C15	H15	C19	239.5	240.0
O5	C15	H15	H15A	119.8	120.1
C19	C15	H15	H15A	240.3	240.1
H15	C15	C19	H19	117.8	60.0
H15	C15	C19	H19A	237.8	180.0
H15	C15	C19	H19B	357.7	300.0
O5	C15	H15A	C19	120.3	120.0
O5	C15	H15A	H15	240.1	239.9
C19	C15	H15A	H15	119.8	119.9
H15A	C15	C19	H19	357.5	300.0
H15A	C15	C19	H19A	117.5	60.1
H15A	C15	C19	H19B	237.5	180.0
H19	C19	C15	H15	117.8	60.0
H19	C19	C15	H15A	357.5	300.0
C15	C19	H19	H19A	120.0	120.0
C15	C19	H19	H19B	240.0	240.0
H19A	C19	H19	H19B	120.0	120.0
H19A	C19	C15	H15	237.8	180.0
H19A	C19	C15	H15A	117.5	60.1
C15	C19	H19A	H19	240.0	240.0
C15	C19	H19A	H19B	119.9	119.9
H19	C19	H19A	H19B	240.0	240.0
H19B	C19	C15	H15	357.7	300.0
H19B	C19	C15	H15A	237.5	180.0
C15	C19	H19B	H19	120.0	120.0
C15	C19	H19B	H19A	240.0	240.0
H19	C19	H19B	H19A	120.0	120.1
C5	C11	H11	C16	180.0	180.1
H11	C11	C16	C17	179.9	180.0
H11	C11	C16	H16	359.9	0.1
C11	C16	H16	C17	180.0	179.9
H16	C16	C11	H11	359.9	0.1
H16	C16	C17	C12	180.1	180.4
H16	C16	C17	H17	0.1	0.0
C16	C17	H17	C12	180.0	180.4
H17	C17	C16	H16	0.1	0.0
H17	C17	C12	H12	359.8	0.0
C6	C12	H12	C17	180.0	180.1
H12	C12	C17	H17	359.8	0.0
O4	C14	H14	C18	237.6	239.9
O4	C14	H14	H14A	118.8	120.0
C18	C14	H14	H14A	241.2	240.0
H14	C14	C18	H18	123.9	179.9
H14	C14	C18	H18A	243.9	299.9
H14	C14	C18	H18B	3.9	59.9
O4	C14	H14A	C18	121.6	120.0
O4	C14	H14A	H14	240.8	240.0
C18	C14	H14A	H14	119.2	120.0
H14A	C14	C18	H18	2.7	60.0
H14A	C14	C18	H18A	122.7	180.0
H14A	C14	C18	H18B	242.7	300.0
H18	C18	C14	H14	123.9	179.9
H18	C18	C14	H14A	2.7	60.0
C14	C18	H18	H18A	120.0	120.0
C14	C18	H18	H18B	240.0	240.0
H18A	C18	H18	H18B	120.0	120.0
H18A	C18	C14	H14	243.9	299.9
H18A	C18	C14	H14A	122.7	180.0
C14	C18	H18A	H18	240.0	240.0
C14	C18	H18A	H18B	120.0	120.0
H18	C18	H18A	H18B	240.0	240.0
H18B	C18	C14	H14	3.9	59.9
H18B	C18	C14	H14A	242.7	300.0
C14	C18	H18B	H18	120.0	120.0
C14	C18	H18B	H18A	240.0	240.0
H18	C18	H18B	H18A	120.0	120.0