PDB Chemical Component 52X
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 52X
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C6 |
C1 |
1.493 |
1.406 |
C1 |
N1 |
1.380 |
1.380 |
C1 |
C2 |
1.408 |
1.392 |
I1 |
C8 |
2.116 |
2.095 |
C8 |
N1 |
1.356 |
1.367 |
O1 |
C14 |
1.219 |
1.213 |
C3 |
C2 |
1.416 |
1.376 |
C2 |
H2 |
1.080 |
1.080 |
C14 |
N2 |
1.320 |
1.348 |
N2 |
C12 |
1.441 |
1.464 |
N2 |
HN2 |
1.000 |
0.970 |
O2 |
C18 |
1.454 |
1.346 |
O2 |
C33 |
1.430 |
1.452 |
C4 |
C3 |
1.411 |
1.394 |
C3 |
H3 |
1.080 |
1.080 |
N3 |
C18 |
1.318 |
1.347 |
N3 |
C4 |
1.353 |
1.402 |
N3 |
HN3 |
1.000 |
0.970 |
C18 |
O3 |
1.219 |
1.215 |
C5 |
C4 |
1.379 |
1.382 |
C5 |
C6 |
1.354 |
1.396 |
C5 |
H5 |
1.080 |
1.080 |
C7 |
C6 |
1.450 |
1.465 |
C11 |
C7 |
1.507 |
1.507 |
C7 |
C8 |
1.451 |
1.343 |
C11 |
C12 |
1.523 |
1.530 |
C11 |
H11 |
1.100 |
1.090 |
C11 |
H11A |
1.100 |
1.090 |
C12 |
H12 |
1.100 |
1.091 |
C12 |
H12A |
1.100 |
1.090 |
C14 |
C15 |
1.488 |
1.507 |
C15 |
H15 |
1.100 |
1.091 |
C15 |
H15A |
1.100 |
1.090 |
C15 |
H15B |
1.100 |
1.090 |
C33 |
H33 |
1.101 |
1.090 |
C33 |
H33A |
1.100 |
1.090 |
C33 |
H33B |
1.100 |
1.090 |
N1 |
HN1 |
0.999 |
0.970 |
Bond Angles for 52X
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
C2 |
136.5 |
133.3 |
C1 |
N1 |
HN1 |
127.3 |
125.1 |
C1 |
C2 |
H2 |
120.4 |
120.0 |
I1 |
C8 |
N1 |
129.0 |
125.0 |
I1 |
C8 |
C7 |
113.1 |
125.0 |
C8 |
N1 |
HN1 |
127.2 |
125.1 |
O1 |
C14 |
N2 |
122.4 |
120.0 |
O1 |
C14 |
C15 |
122.6 |
120.0 |
C3 |
C2 |
H2 |
120.3 |
120.0 |
C14 |
N2 |
HN2 |
120.0 |
120.0 |
C12 |
N2 |
HN2 |
120.1 |
120.0 |
N2 |
C12 |
C11 |
110.7 |
109.5 |
N2 |
C12 |
H12 |
109.1 |
109.5 |
N2 |
C12 |
H12A |
109.1 |
109.5 |
C18 |
O2 |
C33 |
119.5 |
117.1 |
O2 |
C18 |
N3 |
114.8 |
120.0 |
O2 |
C18 |
O3 |
119.8 |
120.0 |
O2 |
C33 |
H33 |
109.5 |
109.4 |
O2 |
C33 |
H33A |
109.4 |
109.5 |
O2 |
C33 |
H33B |
109.5 |
109.5 |
C4 |
C3 |
H3 |
119.0 |
119.7 |
C4 |
N3 |
C18 |
132.1 |
120.0 |
C18 |
N3 |
HN3 |
113.9 |
120.0 |
N3 |
C18 |
O3 |
125.3 |
120.0 |
C4 |
N3 |
HN3 |
114.0 |
120.0 |
C6 |
C5 |
H5 |
120.5 |
120.3 |
C12 |
C11 |
H11 |
109.9 |
109.5 |
C12 |
C11 |
H11A |
110.0 |
109.5 |
C11 |
C12 |
H12 |
109.0 |
109.4 |
C11 |
C12 |
H12A |
109.0 |
109.4 |
H11 |
C11 |
H11A |
109.0 |
109.4 |
H12 |
C12 |
H12A |
109.9 |
109.5 |
C14 |
C15 |
H15 |
109.5 |
109.4 |
C14 |
C15 |
H15A |
109.5 |
109.5 |
C14 |
C15 |
H15B |
109.5 |
109.5 |
H15 |
C15 |
H15A |
109.5 |
109.5 |
H15 |
C15 |
H15B |
109.5 |
109.4 |
H15A |
C15 |
H15B |
109.5 |
109.5 |
H33 |
C33 |
H33A |
109.5 |
109.4 |
H33 |
C33 |
H33B |
109.5 |
109.5 |
H33A |
C33 |
H33B |
109.5 |
109.5 |
Torsion Angles for 52X
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
N1 |
HN1 |
180.1 |
180.3 |
C6 |
C1 |
C2 |
H2 |
181.2 |
179.6 |
N1 |
C1 |
C2 |
H2 |
0.6 |
0.0 |
I1 |
C8 |
N1 |
C1 |
178.6 |
179.9 |
C8 |
N1 |
C1 |
HN1 |
180.0 |
180.0 |
C2 |
C1 |
N1 |
HN1 |
0.7 |
359.9 |
C3 |
C2 |
C1 |
H2 |
180.0 |
180.0 |
I1 |
C8 |
N1 |
HN1 |
358.6 |
359.9 |
C1 |
N1 |
C8 |
HN1 |
180.0 |
179.9 |
I1 |
C8 |
N1 |
C7 |
179.0 |
180.3 |
O1 |
C14 |
N2 |
HN2 |
20.0 |
180.0 |
O1 |
C14 |
C15 |
H15 |
0.0 |
90.0 |
O1 |
C14 |
C15 |
H15A |
120.0 |
210.0 |
O1 |
C14 |
C15 |
H15B |
240.0 |
330.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
O1 |
C14 |
N2 |
C15 |
179.8 |
180.0 |
C12 |
N2 |
C14 |
HN2 |
180.0 |
180.0 |
C14 |
N2 |
C12 |
H12 |
7.4 |
300.0 |
C14 |
N2 |
C12 |
H12A |
127.4 |
60.0 |
O1 |
C14 |
N2 |
C12 |
199.9 |
0.0 |
C14 |
N2 |
C12 |
HN2 |
180.0 |
180.0 |
N2 |
C12 |
C11 |
H11 |
86.5 |
60.0 |
N2 |
C12 |
C11 |
H11A |
326.5 |
300.0 |
C11 |
C12 |
N2 |
H12 |
240.0 |
240.0 |
C11 |
C12 |
N2 |
H12A |
120.0 |
120.0 |
H12 |
C12 |
N2 |
H12A |
240.0 |
240.0 |
HN2 |
N2 |
C12 |
C11 |
67.4 |
0.0 |
HN2 |
N2 |
C12 |
H12 |
187.4 |
120.0 |
HN2 |
N2 |
C12 |
H12A |
307.4 |
240.0 |
C18 |
O2 |
C33 |
H33 |
180.0 |
300.0 |
C18 |
O2 |
C33 |
H33A |
300.0 |
59.9 |
C18 |
O2 |
C33 |
H33B |
60.0 |
180.0 |
C4 |
N3 |
C18 |
O2 |
173.0 |
174.7 |
O2 |
C18 |
N3 |
HN3 |
353.0 |
354.7 |
N3 |
C18 |
O2 |
O3 |
178.4 |
180.0 |
C33 |
O2 |
C18 |
N3 |
239.9 |
180.0 |
C33 |
O2 |
C18 |
O3 |
61.5 |
0.0 |
H33 |
C33 |
O2 |
H33A |
240.0 |
240.1 |
H33 |
C33 |
O2 |
H33B |
120.0 |
120.0 |
H33A |
C33 |
O2 |
H33B |
240.0 |
239.9 |
C4 |
C3 |
C2 |
H2 |
178.6 |
180.1 |
H3 |
C3 |
C2 |
H2 |
358.6 |
360.0 |
N3 |
C18 |
O2 |
C33 |
239.9 |
180.0 |
O2 |
C18 |
N3 |
O3 |
181.7 |
180.0 |
C4 |
N3 |
C18 |
HN3 |
180.0 |
180.0 |
O2 |
C18 |
N3 |
C4 |
173.0 |
174.7 |
N3 |
C4 |
C3 |
H3 |
359.7 |
0.0 |
C18 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
C4 |
N3 |
C18 |
O3 |
351.3 |
354.7 |
C4 |
N3 |
HN3 |
C18 |
180.0 |
180.0 |
HN3 |
N3 |
C18 |
O3 |
171.3 |
174.7 |
O3 |
C18 |
O2 |
C33 |
61.5 |
0.0 |
O2 |
C18 |
O3 |
N3 |
178.2 |
180.0 |
O3 |
C18 |
N3 |
HN3 |
171.3 |
174.7 |
C5 |
C4 |
C3 |
H3 |
181.0 |
180.0 |
C5 |
C4 |
N3 |
C18 |
188.3 |
326.6 |
C5 |
C4 |
N3 |
HN3 |
8.3 |
146.6 |
I1 |
C8 |
C7 |
C6 |
181.4 |
180.0 |
C7 |
C6 |
C5 |
H5 |
359.8 |
0.5 |
N2 |
C12 |
C11 |
C7 |
206.5 |
180.0 |
I1 |
C8 |
C7 |
N1 |
180.8 |
179.7 |
C7 |
C8 |
N1 |
HN1 |
179.6 |
179.7 |
C11 |
C12 |
N2 |
HN2 |
67.4 |
0.0 |
N2 |
C12 |
C11 |
H12 |
120.0 |
120.0 |
N2 |
C12 |
C11 |
H12A |
240.0 |
239.9 |
H11 |
C11 |
C12 |
H11A |
120.0 |
119.9 |
H12 |
C12 |
C11 |
H12A |
120.0 |
119.9 |
C12 |
C11 |
H11 |
H11A |
239.4 |
240.0 |
H11 |
C11 |
C12 |
H12 |
326.5 |
300.0 |
H11 |
C11 |
C12 |
H12A |
206.5 |
180.0 |
C12 |
C11 |
H11A |
H11 |
120.6 |
120.0 |
H11A |
C11 |
C12 |
H12 |
206.5 |
180.0 |
H11A |
C11 |
C12 |
H12A |
86.5 |
60.1 |
H12 |
C12 |
N2 |
HN2 |
187.4 |
120.0 |
N2 |
C12 |
H12 |
C11 |
239.0 |
240.0 |
N2 |
C12 |
H12 |
H12A |
119.5 |
120.1 |
H12 |
C12 |
C11 |
H11 |
326.5 |
300.0 |
H12 |
C12 |
C11 |
H11A |
206.5 |
180.0 |
C11 |
C12 |
H12 |
H12A |
240.5 |
240.1 |
H12A |
C12 |
N2 |
HN2 |
307.4 |
240.0 |
N2 |
C12 |
H12A |
C11 |
121.0 |
120.0 |
N2 |
C12 |
H12A |
H12 |
240.5 |
240.0 |
H12A |
C12 |
C11 |
H11 |
206.5 |
180.0 |
H12A |
C12 |
C11 |
H11A |
86.5 |
60.1 |
C11 |
C12 |
H12A |
H12 |
119.5 |
119.9 |
O1 |
C14 |
C15 |
N2 |
180.2 |
180.0 |
C15 |
C14 |
N2 |
HN2 |
200.2 |
0.0 |
H15 |
C15 |
C14 |
H15A |
240.0 |
240.0 |
H15 |
C15 |
C14 |
H15B |
120.0 |
120.0 |
H15A |
C15 |
C14 |
H15B |
240.0 |
239.9 |
C14 |
C15 |
H15 |
H15A |
120.0 |
120.0 |
C14 |
C15 |
H15 |
H15B |
240.0 |
240.0 |
H15A |
C15 |
H15 |
H15B |
120.0 |
120.0 |
C14 |
C15 |
H15A |
H15 |
240.0 |
240.0 |
C14 |
C15 |
H15A |
H15B |
120.0 |
120.1 |
H15 |
C15 |
H15A |
H15B |
240.0 |
240.0 |
C14 |
C15 |
H15B |
H15 |
120.0 |
120.0 |
C14 |
C15 |
H15B |
H15A |
240.0 |
239.9 |
H15 |
C15 |
H15B |
H15A |
120.0 |
120.0 |
O2 |
C33 |
H33 |
H33A |
120.0 |
119.9 |
O2 |
C33 |
H33 |
H33B |
240.0 |
240.0 |
H33A |
C33 |
H33 |
H33B |
120.0 |
120.0 |
O2 |
C33 |
H33A |
H33 |
240.0 |
240.1 |
O2 |
C33 |
H33A |
H33B |
120.0 |
120.1 |
H33 |
C33 |
H33A |
H33B |
240.0 |
240.0 |
O2 |
C33 |
H33B |
H33 |
120.0 |
120.0 |
O2 |
C33 |
H33B |
H33A |
240.0 |
240.0 |
H33 |
C33 |
H33B |
H33A |
120.0 |
120.0 |
HN1 |
N1 |
C1 |
C2 |
0.7 |
359.9 |