PDB Chemical Component 52X

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 52X

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 C1 1.493 1.406
C1 N1 1.380 1.380
C1 C2 1.408 1.392
I1 C8 2.116 2.095
C8 N1 1.356 1.367
O1 C14 1.219 1.213
C3 C2 1.416 1.376
C2 H2 1.080 1.080
C14 N2 1.320 1.348
N2 C12 1.441 1.464
N2 HN2 1.000 0.970
O2 C18 1.454 1.346
O2 C33 1.430 1.452
C4 C3 1.411 1.394
C3 H3 1.080 1.080
N3 C18 1.318 1.347
N3 C4 1.353 1.402
N3 HN3 1.000 0.970
C18 O3 1.219 1.215
C5 C4 1.379 1.382
C5 C6 1.354 1.396
C5 H5 1.080 1.080
C7 C6 1.450 1.465
C11 C7 1.507 1.507
C7 C8 1.451 1.343
C11 C12 1.523 1.530
C11 H11 1.100 1.090
C11 H11A 1.100 1.090
C12 H12 1.100 1.091
C12 H12A 1.100 1.090
C14 C15 1.488 1.507
C15 H15 1.100 1.091
C15 H15A 1.100 1.090
C15 H15B 1.100 1.090
C33 H33 1.101 1.090
C33 H33A 1.100 1.090
C33 H33B 1.100 1.090
N1 HN1 0.999 0.970

Bond Angles for 52X

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C2 136.5 133.3
C1 N1 HN1 127.3 125.1
C1 C2 H2 120.4 120.0
I1 C8 N1 129.0 125.0
I1 C8 C7 113.1 125.0
C8 N1 HN1 127.2 125.1
O1 C14 N2 122.4 120.0
O1 C14 C15 122.6 120.0
C3 C2 H2 120.3 120.0
C14 N2 HN2 120.0 120.0
C12 N2 HN2 120.1 120.0
N2 C12 C11 110.7 109.5
N2 C12 H12 109.1 109.5
N2 C12 H12A 109.1 109.5
C18 O2 C33 119.5 117.1
O2 C18 N3 114.8 120.0
O2 C18 O3 119.8 120.0
O2 C33 H33 109.5 109.4
O2 C33 H33A 109.4 109.5
O2 C33 H33B 109.5 109.5
C4 C3 H3 119.0 119.7
C4 N3 C18 132.1 120.0
C18 N3 HN3 113.9 120.0
N3 C18 O3 125.3 120.0
C4 N3 HN3 114.0 120.0
C6 C5 H5 120.5 120.3
C12 C11 H11 109.9 109.5
C12 C11 H11A 110.0 109.5
C11 C12 H12 109.0 109.4
C11 C12 H12A 109.0 109.4
H11 C11 H11A 109.0 109.4
H12 C12 H12A 109.9 109.5
C14 C15 H15 109.5 109.4
C14 C15 H15A 109.5 109.5
C14 C15 H15B 109.5 109.5
H15 C15 H15A 109.5 109.5
H15 C15 H15B 109.5 109.4
H15A C15 H15B 109.5 109.5
H33 C33 H33A 109.5 109.4
H33 C33 H33B 109.5 109.5
H33A C33 H33B 109.5 109.5

Torsion Angles for 52X

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 N1 HN1 180.1 180.3
C6 C1 C2 H2 181.2 179.6
N1 C1 C2 H2 0.6 0.0
I1 C8 N1 C1 178.6 179.9
C8 N1 C1 HN1 180.0 180.0
C2 C1 N1 HN1 0.7 359.9
C3 C2 C1 H2 180.0 180.0
I1 C8 N1 HN1 358.6 359.9
C1 N1 C8 HN1 180.0 179.9
I1 C8 N1 C7 179.0 180.3
O1 C14 N2 HN2 20.0 180.0
O1 C14 C15 H15 0.0 90.0
O1 C14 C15 H15A 120.0 210.0
O1 C14 C15 H15B 240.0 330.0
C1 C2 C3 H2 180.0 180.0
O1 C14 N2 C15 179.8 180.0
C12 N2 C14 HN2 180.0 180.0
C14 N2 C12 H12 7.4 300.0
C14 N2 C12 H12A 127.4 60.0
O1 C14 N2 C12 199.9 0.0
C14 N2 C12 HN2 180.0 180.0
N2 C12 C11 H11 86.5 60.0
N2 C12 C11 H11A 326.5 300.0
C11 C12 N2 H12 240.0 240.0
C11 C12 N2 H12A 120.0 120.0
H12 C12 N2 H12A 240.0 240.0
HN2 N2 C12 C11 67.4 0.0
HN2 N2 C12 H12 187.4 120.0
HN2 N2 C12 H12A 307.4 240.0
C18 O2 C33 H33 180.0 300.0
C18 O2 C33 H33A 300.0 59.9
C18 O2 C33 H33B 60.0 180.0
C4 N3 C18 O2 173.0 174.7
O2 C18 N3 HN3 353.0 354.7
N3 C18 O2 O3 178.4 180.0
C33 O2 C18 N3 239.9 180.0
C33 O2 C18 O3 61.5 0.0
H33 C33 O2 H33A 240.0 240.1
H33 C33 O2 H33B 120.0 120.0
H33A C33 O2 H33B 240.0 239.9
C4 C3 C2 H2 178.6 180.1
H3 C3 C2 H2 358.6 360.0
N3 C18 O2 C33 239.9 180.0
O2 C18 N3 O3 181.7 180.0
C4 N3 C18 HN3 180.0 180.0
O2 C18 N3 C4 173.0 174.7
N3 C4 C3 H3 359.7 0.0
C18 N3 C4 HN3 180.0 180.0
C4 N3 C18 O3 351.3 354.7
C4 N3 HN3 C18 180.0 180.0
HN3 N3 C18 O3 171.3 174.7
O3 C18 O2 C33 61.5 0.0
O2 C18 O3 N3 178.2 180.0
O3 C18 N3 HN3 171.3 174.7
C5 C4 C3 H3 181.0 180.0
C5 C4 N3 C18 188.3 326.6
C5 C4 N3 HN3 8.3 146.6
I1 C8 C7 C6 181.4 180.0
C7 C6 C5 H5 359.8 0.5
N2 C12 C11 C7 206.5 180.0
I1 C8 C7 N1 180.8 179.7
C7 C8 N1 HN1 179.6 179.7
C11 C12 N2 HN2 67.4 0.0
N2 C12 C11 H12 120.0 120.0
N2 C12 C11 H12A 240.0 239.9
H11 C11 C12 H11A 120.0 119.9
H12 C12 C11 H12A 120.0 119.9
C12 C11 H11 H11A 239.4 240.0
H11 C11 C12 H12 326.5 300.0
H11 C11 C12 H12A 206.5 180.0
C12 C11 H11A H11 120.6 120.0
H11A C11 C12 H12 206.5 180.0
H11A C11 C12 H12A 86.5 60.1
H12 C12 N2 HN2 187.4 120.0
N2 C12 H12 C11 239.0 240.0
N2 C12 H12 H12A 119.5 120.1
H12 C12 C11 H11 326.5 300.0
H12 C12 C11 H11A 206.5 180.0
C11 C12 H12 H12A 240.5 240.1
H12A C12 N2 HN2 307.4 240.0
N2 C12 H12A C11 121.0 120.0
N2 C12 H12A H12 240.5 240.0
H12A C12 C11 H11 206.5 180.0
H12A C12 C11 H11A 86.5 60.1
C11 C12 H12A H12 119.5 119.9
O1 C14 C15 N2 180.2 180.0
C15 C14 N2 HN2 200.2 0.0
H15 C15 C14 H15A 240.0 240.0
H15 C15 C14 H15B 120.0 120.0
H15A C15 C14 H15B 240.0 239.9
C14 C15 H15 H15A 120.0 120.0
C14 C15 H15 H15B 240.0 240.0
H15A C15 H15 H15B 120.0 120.0
C14 C15 H15A H15 240.0 240.0
C14 C15 H15A H15B 120.0 120.1
H15 C15 H15A H15B 240.0 240.0
C14 C15 H15B H15 120.0 120.0
C14 C15 H15B H15A 240.0 239.9
H15 C15 H15B H15A 120.0 120.0
O2 C33 H33 H33A 120.0 119.9
O2 C33 H33 H33B 240.0 240.0
H33A C33 H33 H33B 120.0 120.0
O2 C33 H33A H33 240.0 240.1
O2 C33 H33A H33B 120.0 120.1
H33 C33 H33A H33B 240.0 240.0
O2 C33 H33B H33 120.0 120.0
O2 C33 H33B H33A 240.0 240.0
H33 C33 H33B H33A 120.0 120.0
HN1 N1 C1 C2 0.7 359.9