PDB Chemical Component 52J

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 52J

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N01 C02 1.504 1.385
C26 C27 1.411 1.379
C26 C25 1.420 1.396
C02 N36 1.352 1.329
C02 C03 1.396 1.397
C27 C28 1.373 1.384
N36 C34 1.381 1.325
C04 C03 1.488 1.507
C04 C05 1.569 1.507
C19 C25 1.487 1.473
C19 N18 1.436 1.298
C25 C24 1.380 1.395
C03 C32 1.445 1.381
C28 C29 1.433 1.382
C34 N35 1.441 1.384
C34 N33 1.345 1.325
C05 C31 1.373 1.378
C05 C06 1.435 1.386
N18 N17 1.346 1.403
C24 C29 1.398 1.377
C24 C20 1.491 1.509
C31 C13 1.441 1.400
C32 N33 1.364 1.325
C06 C07 1.401 1.386
N17 C20 1.430 1.469
N17 C16 1.433 1.348
C15 C16 1.492 1.461
C15 C14 1.407 1.350
C13 C14 1.558 1.470
C13 C10 1.410 1.402
C20 C21 1.527 1.530
C07 C10 1.402 1.391
C07 O08 1.365 1.360
C16 O30 1.190 1.218
C09 O08 1.437 1.428
C10 O11 1.385 1.358
C21 C22 1.570 1.530
O11 C12 1.428 1.428
C22 C37 1.605 1.530
C22 C23 1.505 1.530
N01 H1 0.999 0.970
N01 H2 1.000 0.970
C04 H3 1.100 1.090
C04 H4 1.100 1.090
C06 H5 1.080 1.080
C09 H6 1.100 1.090
C09 H7 1.100 1.090
C09 H8 1.100 1.090
C12 H9 1.100 1.090
C12 H10 1.100 1.090
C12 H11 1.100 1.091
C31 H12 1.080 1.079
C32 H13 1.080 1.080
N35 H14 1.000 0.970
N35 H15 1.000 0.970
C14 H16 1.080 1.079
C15 H17 1.080 1.080
C19 H19 1.080 1.080
C20 H21 1.100 1.089
C21 H22 1.100 1.090
C21 H23 1.100 1.091
C22 H24 1.100 1.090
C23 H25 1.100 1.090
C23 H26 1.100 1.089
C23 H27 1.100 1.090
C26 H28 1.080 1.080
C27 H29 1.080 1.080
C28 H30 1.080 1.080
C29 H31 1.080 1.080
C37 H32 1.100 1.090
C37 H33 1.100 1.090
C37 H34 1.100 1.089

Bond Angles for 52J

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N01 C02 N36 120.0 120.5
N01 C02 C03 119.9 120.5
C02 N01 H1 109.5 120.0
C02 N01 H2 109.5 120.1
C26 C27 C28 119.8 120.3
C27 C26 H28 120.0 120.2
C26 C27 H29 120.1 119.9
C03 C02 N36 120.1 119.0
C02 N36 C34 120.1 120.6
C02 C03 C32 118.6 118.5
C27 C28 C29 120.0 120.2
C28 C27 H29 120.1 119.9
C27 C28 H30 120.0 119.8
C04 C03 C32 121.7 120.7
C04 C05 C31 120.7 119.8
C04 C05 C06 119.4 119.8
C05 C04 H3 109.0 109.4
C05 C04 H4 109.0 109.5
C19 C25 C24 120.7 119.5
C25 C19 H19 122.8 120.1
C25 C24 C29 120.0 119.9
C03 C32 N33 118.8 119.3
C03 C32 H13 120.6 120.4
C24 C29 C28 120.0 120.2
C29 C28 H30 120.0 120.0
C28 C29 H31 120.0 119.7
C34 N35 H14 109.5 119.9
C34 N35 H15 109.5 120.1
C06 C05 C31 120.0 120.4
C05 C31 C13 119.8 119.9
C05 C31 H12 120.1 120.0
C05 C06 C07 120.3 120.4
C05 C06 H5 119.9 119.8
N18 N17 C20 119.0 119.6
C24 C29 H31 120.0 120.0
C24 C20 H21 108.8 109.7
C31 C13 C14 120.2 120.2
N33 C32 H13 120.5 120.4
C06 C07 C10 120.0 120.0
C06 C07 O08 119.8 119.9
C07 C06 H5 119.8 119.8
N17 C20 C21 109.1 109.6
N17 C20 H21 109.7 109.7
C16 C15 H17 120.1 120.0
C15 C14 H16 119.7 120.0
C13 C14 H16 119.7 120.0
C20 C21 C22 117.6 109.4
C21 C20 H21 108.4 109.6
C20 C21 H22 107.4 109.5
C20 C21 H23 107.4 109.5
O08 C07 C10 120.2 120.1
C07 C10 O11 119.9 120.1
C10 O11 C12 119.6 117.0
C21 C22 C37 113.7 109.5
C21 C22 C23 113.5 109.5
C22 C21 H22 107.4 109.5
C22 C21 H23 107.4 109.4
C21 C22 H24 104.8 109.5
O11 C12 H9 109.5 109.5
O11 C12 H10 109.5 109.5
O11 C12 H11 109.5 109.5
C23 C22 C37 113.8 109.5
C37 C22 H24 104.4 109.4
C22 C37 H32 109.5 109.4
C22 C37 H33 109.4 109.5
C22 C37 H34 109.4 109.5
C23 C22 H24 105.4 109.5
C22 C23 H25 109.5 109.4
C22 C23 H26 109.4 109.5
C22 C23 H27 109.4 109.4
H1 N01 H2 109.5 119.9
H3 C04 H4 109.4 109.5
H6 C09 H7 109.4 109.5
H6 C09 H8 109.5 109.5
H7 C09 H8 109.5 109.5
H9 C12 H10 109.5 109.5
H9 C12 H11 109.5 109.5
H10 C12 H11 109.5 109.4
H14 N35 H15 109.4 120.0
H22 C21 H23 109.5 109.5
H25 C23 H26 109.5 109.5
H25 C23 H27 109.5 109.4
H26 C23 H27 109.5 109.5
H32 C37 H33 109.4 109.5
H32 C37 H34 109.5 109.5
H33 C37 H34 109.5 109.5

Torsion Angles for 52J

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C03 C02 N01 N36 179.9 180.3
N01 C02 N36 C34 180.0 179.8
N01 C02 C03 C32 179.9 180.0
H1 N01 C02 H2 240.0 180.3
C26 C27 C28 C29 360.0 0.7
C28 C27 C26 H29 180.0 180.0
C26 C27 C28 H30 180.0 180.3
C26 C25 C19 H19 348.7 13.7
C26 C25 C24 C29 359.9 0.9
N01 C02 N36 C03 179.9 180.3
N36 C02 N01 H1 360.0 360.0
N36 C02 N01 H2 120.0 179.7
N36 C02 C03 C32 359.9 0.2
N01 C02 C03 N36 180.1 179.7
C03 C02 N01 H1 179.9 180.3
C03 C02 N01 H2 299.9 360.0
C03 C02 N36 C34 0.1 359.5
C04 C03 C02 C32 180.1 180.0
C02 C03 C32 N33 0.1 0.0
C02 C03 C32 H13 180.1 179.9
C28 C27 C26 H28 180.0 180.0
C26 C27 C28 H29 180.0 180.0
C24 C29 C28 C27 360.0 359.5
C29 C28 C27 H30 180.0 180.4
C27 C28 C29 H31 180.0 180.0
N36 C34 N35 H14 0.0 180.3
N36 C34 N35 H15 120.0 0.3
C04 C03 C02 N36 180.0 180.3
C02 C03 C04 C32 179.8 180.0
C04 C03 C32 N33 180.0 180.0
C04 C03 C32 H13 360.0 359.9
C05 C04 C03 C32 13.8 265.0
C06 C05 C04 C31 179.6 180.3
C04 C05 C31 C13 179.8 179.8
C04 C05 C31 H12 359.8 0.0
C04 C05 C06 C07 180.2 180.0
C04 C05 C06 H5 0.2 359.9
H3 C04 C05 H4 119.4 120.0
C19 C25 C24 C29 180.0 180.9
C19 N18 N17 C20 303.2 328.3
C24 C25 C19 H19 168.6 193.7
C25 C24 C29 C28 0.1 359.7
C25 C24 C29 H31 180.1 179.1
C25 C24 C20 H21 225.4 213.5
C32 C03 C02 N36 359.9 0.2
N33 C32 C03 H13 180.0 180.1
C29 C28 C27 H29 180.0 180.7
C27 C28 C29 H30 180.0 179.6
C24 C29 C28 H31 180.0 179.4
C02 N36 C34 N35 180.0 180.3
H14 N35 C34 H15 240.0 180.0
C02 N36 C34 N33 360.0 0.5
C34 N33 C32 H13 179.9 180.1
C04 C05 C31 C06 179.6 180.3
C31 C05 C04 H3 288.0 330.0
C31 C05 C04 H4 168.6 210.0
C31 C05 C06 C07 359.8 0.3
C31 C05 C06 H5 179.8 180.3
C05 C31 C13 C14 179.8 180.3
C04 C05 C06 C31 180.4 179.7
C06 C05 C04 H3 107.6 150.3
C06 C05 C04 H4 348.2 30.3
C06 C05 C31 C13 0.2 359.4
C06 C05 C31 H12 180.2 179.7
C05 C06 C07 C10 0.1 360.0
C05 C06 C07 O08 180.1 179.9
C07 C06 C05 H5 180.0 180.1
N18 N17 C20 C21 282.3 282.8
N18 N17 C20 H21 163.7 162.4
C27 C28 C29 C24 360.0 359.5
C24 C29 C28 H30 180.0 179.8
C28 C29 C24 H31 180.0 180.6
C29 C24 C20 H21 45.5 33.6
C19 C25 C24 C20 0.1 1.0
N17 C20 C24 H21 121.0 119.9
C21 C20 C24 H21 241.8 239.6
C24 C20 C21 H22 189.5 295.9
C24 C20 C21 H23 307.1 55.9
C05 C31 C13 H12 180.0 180.3
C31 C13 C14 H16 224.2 180.2
C03 C32 N33 H13 180.0 179.9
C07 C06 C05 C31 359.8 0.3
C05 C06 C07 H5 180.0 179.9
O08 C07 C06 C10 180.1 180.0
C06 C07 C10 O11 180.0 180.1
C24 C20 N17 H21 239.5 240.1
N17 C20 C21 C22 190.5 294.9
C21 C20 N17 H21 118.6 120.4
N17 C20 C21 H22 311.6 55.0
N17 C20 C21 H23 69.3 175.0
N17 C16 C15 H17 323.6 360.0
C16 C15 C14 H16 349.5 0.0
C13 C14 C15 H16 180.0 179.9
C15 C14 C13 H16 180.0 180.1
C05 C31 C13 C10 359.9 0.5
C24 C20 C21 H21 118.5 120.5
N17 C20 C21 H21 240.6 239.6
C20 C21 C22 C37 208.5 295.0
C20 C21 C22 C23 76.4 175.0
C22 C21 C20 H22 238.8 240.0
C22 C21 C20 H23 121.2 119.9
C20 C21 C22 H24 321.9 55.0
H22 C21 C20 H23 242.3 239.9
C06 C07 C10 O08 180.1 180.0
C10 C07 C06 H5 180.1 180.0
C07 C10 O11 C12 107.3 89.9
C06 C07 O08 C10 179.9 180.0
O08 C07 C06 H5 0.2 0.0
O08 C07 C10 O11 360.0 0.1
C09 O08 C07 C10 199.0 180.0
C10 O11 C12 H9 180.0 300.0
C10 O11 C12 H10 300.0 60.1
C10 O11 C12 H11 60.0 180.0
C22 C21 C20 H21 309.8 55.4
C20 C21 C22 H22 121.2 120.0
C20 C21 C22 H23 238.8 240.0
C23 C22 C21 C37 227.8 240.0
C37 C22 C21 H24 246.6 240.0
C21 C22 C37 H32 180.0 300.0
C21 C22 C37 H33 300.0 60.0
C21 C22 C37 H34 60.0 180.0
C23 C22 C21 H24 114.5 120.0
C21 C22 C23 H25 180.0 60.0
C21 C22 C23 H26 300.0 180.0
C21 C22 C23 H27 60.0 300.1
H22 C21 C22 H23 117.7 120.0
H9 C12 O11 H10 240.0 240.0
H9 C12 O11 H11 120.0 120.0
H10 C12 O11 H11 240.0 240.0
C21 C22 C37 C23 228.0 240.0
C37 C22 C21 H22 87.4 175.0
C37 C22 C21 H23 329.7 55.0
C21 C22 C37 H24 113.6 120.0
C23 C22 C37 H24 245.6 240.0
C37 C22 C23 H25 47.9 299.9
C37 C22 C23 H26 167.9 60.0
C37 C22 C23 H27 287.9 180.0
H32 C37 C22 H33 240.0 240.0
H32 C37 C22 H34 120.0 120.0
H33 C37 C22 H34 240.0 240.0
C21 C22 C23 C37 132.1 120.0
C23 C22 C21 H22 315.2 55.0
C23 C22 C21 H23 197.5 295.0
C21 C22 C23 H24 245.9 240.0
C37 C22 C23 H24 113.8 120.0
C23 C22 C37 H32 312.0 60.0
C23 C22 C37 H33 72.0 180.0
C23 C22 C37 H34 192.0 300.0
H25 C23 C22 H26 240.0 240.0
H25 C23 C22 H27 120.0 119.9
H26 C23 C22 H27 240.0 240.0
H1 N01 C02 N36 360.0 360.0
H1 N01 C02 C03 179.9 180.3
C02 N01 H1 H2 120.0 179.7
H2 N01 C02 N36 120.0 179.7
H2 N01 C02 C03 299.9 360.0
C02 N01 H2 H1 240.0 180.3
H3 C04 C03 C32 134.1 25.0
H3 C04 C05 C31 288.0 330.0
H3 C04 C05 C06 107.6 150.3
C05 C04 H3 H4 240.8 240.0
H4 C04 C03 C32 253.5 145.0
H4 C04 C05 C31 168.6 210.0
H4 C04 C05 C06 348.2 30.3
C05 C04 H4 H3 119.2 120.0
H5 C06 C05 C31 179.8 180.3
C05 C06 H5 C07 180.0 180.1
H5 C06 C07 C10 180.1 180.0
H5 C06 C07 O08 0.2 0.0
H7 C09 H6 H8 120.0 120.0
H6 C09 H7 H8 240.0 240.0
H6 C09 H8 H7 120.0 120.0
O11 C12 H9 H10 120.0 120.0
O11 C12 H9 H11 240.0 240.0
H10 C12 H9 H11 120.0 119.9
O11 C12 H10 H9 240.0 239.9
O11 C12 H10 H11 120.0 120.0
H9 C12 H10 H11 240.0 240.1
O11 C12 H11 H9 120.0 120.1
O11 C12 H11 H10 240.0 240.0
H9 C12 H11 H10 120.0 119.9
C05 C31 H12 C13 180.0 179.7
H12 C31 C13 C14 359.9 0.0
C03 C32 H13 N33 180.0 180.1
C34 N35 H14 H15 120.0 180.0
C34 N35 H15 H14 240.0 180.0
H17 C15 C14 H16 169.5 180.0
H19 C19 C25 C24 168.6 193.7
N17 C20 H21 C21 119.0 120.4
H21 C20 C21 C22 309.8 55.4
H21 C20 C21 H22 71.0 175.4
H21 C20 C21 H23 188.7 295.4
C20 C21 H22 C22 232.7 240.0
H22 C21 C20 H21 71.0 175.4
C20 C21 H22 H23 116.3 120.1
H22 C21 C22 C37 87.4 175.0
H22 C21 C22 C23 315.2 55.0
C22 C21 H22 H23 243.7 240.1
H22 C21 C22 H24 200.7 295.0
C20 C21 H23 C22 127.3 119.9
H23 C21 C20 H21 188.7 295.4
C20 C21 H23 H22 243.7 239.9
H23 C21 C22 C37 329.7 55.0
H23 C21 C22 C23 197.5 295.0
C22 C21 H23 H22 116.3 120.0
H23 C21 C22 H24 83.1 175.0
C21 C22 H24 C37 240.2 240.0
C21 C22 H24 C23 120.0 120.0
H24 C22 C21 H22 200.7 295.0
H24 C22 C21 H23 83.1 175.0
C23 C22 H24 C37 120.2 120.0
H24 C22 C37 H32 66.5 180.0
H24 C22 C37 H33 186.4 300.0
H24 C22 C37 H34 306.5 60.0
H24 C22 C23 H25 294.1 180.0
H24 C22 C23 H26 54.1 300.0
H24 C22 C23 H27 174.1 60.1
H25 C23 C22 C37 47.9 299.9
H25 C23 C22 H24 294.1 180.0
C22 C23 H25 H26 120.0 120.0
C22 C23 H25 H27 240.0 240.1
H26 C23 H25 H27 120.0 120.0
H26 C23 C22 C37 167.9 60.0
H26 C23 C22 H24 54.1 300.0
C22 C23 H26 H25 240.0 240.0
C22 C23 H26 H27 120.0 120.0
H25 C23 H26 H27 240.0 240.0
H27 C23 C22 C37 287.9 180.0
H27 C23 C22 H24 174.1 60.1
C22 C23 H27 H25 120.0 119.9
C22 C23 H27 H26 240.0 240.0
H25 C23 H27 H26 120.0 120.0
H28 C26 C27 C28 180.0 180.0
H28 C26 C27 H29 0.1 0.0
C26 C27 H29 C28 180.0 180.0
H29 C27 C26 H28 0.1 0.0
H29 C27 C28 C29 180.0 180.7
H29 C27 C28 H30 360.0 0.3
C27 C28 H30 C29 180.0 180.4
H30 C28 C27 H29 360.0 0.3
H30 C28 C29 H31 360.0 0.4
C24 C29 H31 C28 180.0 180.6
H31 C29 C28 H30 360.0 0.4
H32 C37 C22 H24 66.5 180.0
C22 C37 H32 H33 120.0 120.0
C22 C37 H32 H34 240.0 240.0
H33 C37 H32 H34 120.0 120.0
H33 C37 C22 H24 186.4 300.0
C22 C37 H33 H32 240.0 240.0
C22 C37 H33 H34 120.0 120.0
H32 C37 H33 H34 240.0 240.0
H34 C37 C22 H24 306.5 60.0
C22 C37 H34 H32 120.0 120.0
C22 C37 H34 H33 240.0 240.0
H32 C37 H34 H33 120.0 120.0