PDB Chemical Component 52I
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 52I
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C28 |
C29 |
1.398 |
1.384 |
C28 |
C27 |
1.401 |
1.384 |
C29 |
C24 |
1.419 |
1.377 |
C27 |
C26 |
1.397 |
1.380 |
O30 |
C16 |
1.220 |
1.218 |
C24 |
C20 |
1.493 |
1.512 |
C24 |
C25 |
1.373 |
1.398 |
O11 |
C12 |
1.396 |
1.428 |
O11 |
C10 |
1.398 |
1.358 |
C20 |
N17 |
1.437 |
1.469 |
C20 |
C21 |
1.551 |
1.530 |
C22 |
C23 |
1.519 |
1.530 |
C22 |
C37 |
1.531 |
1.530 |
C22 |
C21 |
1.550 |
1.530 |
C16 |
N17 |
1.463 |
1.348 |
C16 |
C15 |
1.535 |
1.462 |
C26 |
C25 |
1.418 |
1.395 |
C14 |
C15 |
1.405 |
1.350 |
C14 |
C13 |
1.528 |
1.469 |
N17 |
N18 |
1.357 |
1.403 |
C25 |
C19 |
1.495 |
1.474 |
C10 |
C13 |
1.400 |
1.403 |
C10 |
C07 |
1.406 |
1.391 |
O08 |
C07 |
1.383 |
1.360 |
O08 |
C09 |
1.386 |
1.428 |
C13 |
C31 |
1.414 |
1.400 |
N18 |
C19 |
1.434 |
1.299 |
C07 |
C06 |
1.415 |
1.386 |
N33 |
C32 |
1.366 |
1.325 |
N33 |
C34 |
1.352 |
1.325 |
C31 |
C05 |
1.411 |
1.377 |
C32 |
C03 |
1.405 |
1.381 |
C06 |
C05 |
1.398 |
1.385 |
N35 |
C34 |
1.460 |
1.383 |
C05 |
C04 |
1.544 |
1.507 |
C34 |
N36 |
1.347 |
1.324 |
C03 |
C04 |
1.536 |
1.507 |
C03 |
C02 |
1.419 |
1.397 |
N36 |
C02 |
1.365 |
1.330 |
C02 |
N01 |
1.443 |
1.385 |
C12 |
H1 |
1.100 |
1.090 |
C12 |
H2 |
1.100 |
1.090 |
C12 |
H3 |
1.100 |
1.090 |
N01 |
H4 |
1.000 |
0.970 |
N01 |
H5 |
1.000 |
0.971 |
C04 |
H6 |
1.100 |
1.090 |
C04 |
H7 |
1.100 |
1.090 |
C06 |
H8 |
1.080 |
1.080 |
C09 |
H9 |
1.100 |
1.090 |
C09 |
H10 |
1.100 |
1.090 |
C09 |
H11 |
1.100 |
1.089 |
C31 |
H12 |
1.080 |
1.080 |
C32 |
H13 |
1.080 |
1.080 |
N35 |
H14 |
1.000 |
0.970 |
N35 |
H15 |
1.000 |
0.971 |
C14 |
H16 |
1.080 |
1.080 |
C19 |
H19 |
1.080 |
1.080 |
C26 |
H20 |
1.080 |
1.079 |
C27 |
H21 |
1.080 |
1.080 |
C28 |
H22 |
1.080 |
1.080 |
C29 |
H23 |
1.080 |
1.080 |
C20 |
H24 |
1.100 |
1.090 |
C21 |
H25 |
1.100 |
1.090 |
C21 |
H26 |
1.100 |
1.090 |
C15 |
H27 |
1.080 |
1.081 |
C22 |
H28 |
1.101 |
1.090 |
C23 |
H29 |
1.100 |
1.090 |
C23 |
H30 |
1.100 |
1.089 |
C23 |
H31 |
1.100 |
1.090 |
C37 |
H32 |
1.100 |
1.091 |
C37 |
H33 |
1.100 |
1.090 |
C37 |
H34 |
1.100 |
1.090 |
Bond Angles for 52I
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C28 |
C29 |
C24 |
119.5 |
119.9 |
C29 |
C28 |
H22 |
119.9 |
119.8 |
C28 |
C29 |
H23 |
120.3 |
120.1 |
C28 |
C27 |
H21 |
119.9 |
119.9 |
C29 |
C24 |
C20 |
122.0 |
120.8 |
C24 |
C29 |
H23 |
120.3 |
120.0 |
C27 |
C26 |
H20 |
120.3 |
120.1 |
O30 |
C16 |
N17 |
120.0 |
120.0 |
O30 |
C16 |
C15 |
119.8 |
120.0 |
C24 |
C20 |
C21 |
109.9 |
109.6 |
C24 |
C20 |
H24 |
108.3 |
109.6 |
O11 |
C12 |
H1 |
109.5 |
109.4 |
O11 |
C12 |
H2 |
109.5 |
109.5 |
O11 |
C12 |
H3 |
109.5 |
109.5 |
O11 |
C10 |
C13 |
119.8 |
120.2 |
C21 |
C20 |
H24 |
107.6 |
109.8 |
C20 |
C21 |
H25 |
107.3 |
109.5 |
C20 |
C21 |
H26 |
107.4 |
109.4 |
C23 |
C22 |
C37 |
113.6 |
109.5 |
C23 |
C22 |
H28 |
105.0 |
109.4 |
C22 |
C23 |
H29 |
109.5 |
109.4 |
C22 |
C23 |
H30 |
109.5 |
109.5 |
C22 |
C23 |
H31 |
109.4 |
109.4 |
C37 |
C22 |
H28 |
104.9 |
109.5 |
C22 |
C37 |
H32 |
109.5 |
109.5 |
C22 |
C37 |
H33 |
109.5 |
109.5 |
C22 |
C37 |
H34 |
109.4 |
109.5 |
C22 |
C21 |
H25 |
107.3 |
109.5 |
C22 |
C21 |
H26 |
107.4 |
109.5 |
N17 |
C16 |
C15 |
120.2 |
120.0 |
C16 |
N17 |
N18 |
119.0 |
120.2 |
C14 |
C15 |
C16 |
119.3 |
120.0 |
C16 |
C15 |
H27 |
120.3 |
120.0 |
C15 |
C14 |
H16 |
119.9 |
120.0 |
C14 |
C15 |
H27 |
120.4 |
120.0 |
N17 |
N18 |
C19 |
116.3 |
120.0 |
C25 |
C19 |
H19 |
123.8 |
120.1 |
C07 |
C10 |
C13 |
120.0 |
119.6 |
C10 |
C13 |
C31 |
120.1 |
119.6 |
C10 |
C07 |
C06 |
119.9 |
120.0 |
O08 |
C09 |
H9 |
109.5 |
109.5 |
O08 |
C09 |
H10 |
109.4 |
109.4 |
O08 |
C09 |
H11 |
109.4 |
109.5 |
C13 |
C31 |
H12 |
120.1 |
120.0 |
N18 |
C19 |
H19 |
123.7 |
120.1 |
C07 |
C06 |
H8 |
119.8 |
119.8 |
N33 |
C32 |
H13 |
121.0 |
120.4 |
N33 |
C34 |
N36 |
120.1 |
121.6 |
N35 |
C34 |
N36 |
119.7 |
119.2 |
C05 |
C04 |
H6 |
108.8 |
109.5 |
C05 |
C04 |
H7 |
108.8 |
109.4 |
C03 |
C04 |
H6 |
108.8 |
109.5 |
C03 |
C04 |
H7 |
108.8 |
109.5 |
C02 |
N01 |
H4 |
109.5 |
120.0 |
C02 |
N01 |
H5 |
109.5 |
120.0 |
H1 |
C12 |
H2 |
109.5 |
109.5 |
H1 |
C12 |
H3 |
109.4 |
109.4 |
H2 |
C12 |
H3 |
109.5 |
109.5 |
H4 |
N01 |
H5 |
109.5 |
120.0 |
H6 |
C04 |
H7 |
109.5 |
109.5 |
H9 |
C09 |
H10 |
109.5 |
109.4 |
H9 |
C09 |
H11 |
109.5 |
109.5 |
H10 |
C09 |
H11 |
109.5 |
109.5 |
H14 |
N35 |
H15 |
109.4 |
120.0 |
H25 |
C21 |
H26 |
109.5 |
109.5 |
H29 |
C23 |
H30 |
109.5 |
109.5 |
H29 |
C23 |
H31 |
109.5 |
109.5 |
H30 |
C23 |
H31 |
109.5 |
109.5 |
H32 |
C37 |
H33 |
109.5 |
109.4 |
H32 |
C37 |
H34 |
109.5 |
109.5 |
H33 |
C37 |
H34 |
109.5 |
109.5 |
Torsion Angles for 52I
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C29 |
C28 |
C27 |
H21 |
180.0 |
179.4 |
C28 |
C29 |
C24 |
C20 |
180.0 |
181.4 |
C24 |
C29 |
C28 |
H23 |
180.0 |
180.1 |
C28 |
C27 |
C26 |
H20 |
180.1 |
179.6 |
C24 |
C29 |
C28 |
H22 |
180.0 |
180.4 |
C28 |
C29 |
C24 |
H23 |
180.0 |
179.9 |
C29 |
C24 |
C20 |
C21 |
89.7 |
86.8 |
C29 |
C24 |
C20 |
H24 |
332.5 |
326.3 |
N17 |
C16 |
O30 |
C15 |
180.0 |
180.0 |
O30 |
C16 |
N17 |
N18 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
O30 |
338.1 |
0.0 |
O30 |
C16 |
C15 |
H27 |
158.1 |
180.0 |
C20 |
C24 |
C29 |
H23 |
360.0 |
1.5 |
C21 |
C20 |
C24 |
H24 |
117.3 |
120.5 |
C24 |
C20 |
C21 |
H25 |
10.1 |
305.8 |
C24 |
C20 |
C21 |
H26 |
127.8 |
65.8 |
C24 |
C25 |
C19 |
H19 |
142.6 |
166.2 |
C12 |
O11 |
C10 |
C13 |
89.6 |
90.0 |
H1 |
C12 |
O11 |
H2 |
240.0 |
239.9 |
H1 |
C12 |
O11 |
H3 |
120.0 |
119.9 |
H2 |
C12 |
O11 |
H3 |
240.0 |
240.0 |
C07 |
C10 |
O11 |
C13 |
180.0 |
179.7 |
O11 |
C10 |
C13 |
C31 |
180.0 |
179.8 |
C20 |
N17 |
C16 |
C15 |
180.0 |
179.7 |
C24 |
C20 |
C21 |
H24 |
242.3 |
239.6 |
C22 |
C21 |
C20 |
H25 |
238.8 |
239.9 |
C22 |
C21 |
C20 |
H26 |
121.2 |
119.9 |
H25 |
C21 |
C20 |
H26 |
242.4 |
240.0 |
C37 |
C22 |
C23 |
H28 |
246.0 |
120.1 |
C23 |
C22 |
C37 |
H32 |
180.0 |
300.7 |
C23 |
C22 |
C37 |
H33 |
300.0 |
60.6 |
C23 |
C22 |
C37 |
H34 |
60.0 |
180.7 |
C23 |
C22 |
C21 |
H25 |
143.5 |
306.2 |
C23 |
C22 |
C21 |
H26 |
25.9 |
186.1 |
H29 |
C23 |
C22 |
H30 |
240.0 |
240.0 |
H29 |
C23 |
C22 |
H31 |
120.0 |
120.0 |
H30 |
C23 |
C22 |
H31 |
240.0 |
240.0 |
C23 |
C22 |
C37 |
H28 |
114.1 |
240.0 |
C37 |
C22 |
C23 |
H29 |
180.0 |
60.0 |
C37 |
C22 |
C23 |
H30 |
300.0 |
180.0 |
C37 |
C22 |
C23 |
H31 |
60.0 |
300.1 |
C37 |
C22 |
C21 |
H25 |
11.4 |
66.2 |
C37 |
C22 |
C21 |
H26 |
253.8 |
306.1 |
H32 |
C37 |
C22 |
H33 |
240.0 |
240.0 |
H32 |
C37 |
C22 |
H34 |
120.0 |
120.0 |
H33 |
C37 |
C22 |
H34 |
240.0 |
240.0 |
C22 |
C21 |
C20 |
H24 |
6.7 |
306.2 |
C20 |
C21 |
C22 |
H25 |
121.2 |
120.0 |
C20 |
C21 |
C22 |
H26 |
238.8 |
240.1 |
H25 |
C21 |
C22 |
H26 |
117.6 |
120.0 |
O30 |
C16 |
N17 |
C15 |
180.0 |
180.0 |
C14 |
C15 |
C16 |
N17 |
158.1 |
180.0 |
N17 |
C16 |
C15 |
H27 |
338.1 |
0.0 |
C16 |
N17 |
N18 |
C19 |
169.7 |
212.0 |
O30 |
C16 |
C15 |
N17 |
180.0 |
180.0 |
C15 |
C16 |
N17 |
N18 |
359.9 |
0.0 |
C16 |
C15 |
C14 |
H16 |
354.8 |
360.0 |
C14 |
C15 |
C16 |
H27 |
180.0 |
180.0 |
C26 |
C25 |
C19 |
H19 |
322.5 |
347.2 |
O30 |
C16 |
C15 |
C14 |
338.1 |
0.0 |
N17 |
C16 |
C15 |
C14 |
158.1 |
180.0 |
C16 |
C15 |
C14 |
H27 |
180.0 |
180.0 |
C14 |
C13 |
C31 |
H12 |
359.7 |
0.1 |
N18 |
N17 |
C16 |
C15 |
359.9 |
0.0 |
N17 |
N18 |
C19 |
H19 |
222.7 |
178.7 |
N18 |
C19 |
C25 |
H19 |
180.0 |
180.1 |
C13 |
C10 |
C07 |
C06 |
0.0 |
360.0 |
C10 |
C13 |
C31 |
H12 |
179.8 |
180.0 |
O11 |
C10 |
C07 |
C13 |
180.0 |
180.3 |
C07 |
C10 |
C13 |
C31 |
360.0 |
0.0 |
C10 |
C07 |
C06 |
H8 |
180.1 |
180.0 |
O08 |
C07 |
C10 |
C13 |
180.0 |
180.0 |
O08 |
C07 |
C06 |
H8 |
0.2 |
360.0 |
H9 |
C09 |
O08 |
H10 |
240.0 |
240.1 |
H9 |
C09 |
O08 |
H11 |
120.0 |
120.0 |
H10 |
C09 |
O08 |
H11 |
240.0 |
240.0 |
C25 |
C19 |
N18 |
H19 |
180.0 |
179.9 |
C06 |
C07 |
C10 |
C13 |
0.0 |
360.0 |
C34 |
N33 |
C32 |
H13 |
180.0 |
180.0 |
N35 |
C34 |
N33 |
N36 |
180.0 |
180.3 |
C10 |
C13 |
C31 |
C05 |
359.8 |
360.0 |
C31 |
C05 |
C04 |
H6 |
187.7 |
150.1 |
C31 |
C05 |
C04 |
H7 |
306.9 |
30.0 |
C32 |
C03 |
C04 |
H6 |
229.9 |
25.0 |
C32 |
C03 |
C04 |
H7 |
110.7 |
145.0 |
C10 |
C07 |
C06 |
C05 |
0.2 |
0.0 |
C06 |
C05 |
C04 |
H6 |
7.1 |
330.0 |
C06 |
C05 |
C04 |
H7 |
126.2 |
210.0 |
N33 |
C34 |
N35 |
N36 |
180.0 |
179.7 |
C03 |
C04 |
C05 |
H6 |
239.6 |
120.0 |
C03 |
C04 |
C05 |
H7 |
120.4 |
240.0 |
H6 |
C04 |
C05 |
H7 |
240.8 |
120.0 |
C05 |
C04 |
C03 |
H6 |
120.4 |
240.0 |
C05 |
C04 |
C03 |
H7 |
239.6 |
119.9 |
H6 |
C04 |
C03 |
H7 |
119.2 |
239.9 |
C03 |
C02 |
N01 |
H4 |
180.1 |
0.0 |
C03 |
C02 |
N01 |
H5 |
300.1 |
180.0 |
N36 |
C02 |
N01 |
H4 |
0.0 |
179.7 |
N36 |
C02 |
N01 |
H5 |
120.0 |
359.7 |
H4 |
N01 |
C02 |
H5 |
240.0 |
180.0 |
O11 |
C12 |
H1 |
H2 |
120.0 |
120.0 |
O11 |
C12 |
H1 |
H3 |
240.0 |
240.1 |
H2 |
C12 |
H1 |
H3 |
120.0 |
120.0 |
O11 |
C12 |
H2 |
H1 |
240.0 |
240.0 |
O11 |
C12 |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C12 |
H2 |
H3 |
240.0 |
240.0 |
O11 |
C12 |
H3 |
H1 |
120.0 |
119.9 |
O11 |
C12 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C12 |
H3 |
H2 |
120.0 |
120.0 |
C02 |
N01 |
H4 |
H5 |
120.0 |
180.0 |
C02 |
N01 |
H5 |
H4 |
240.0 |
180.0 |
C05 |
C04 |
H6 |
H7 |
118.8 |
240.0 |
C03 |
C04 |
H6 |
H7 |
241.2 |
120.0 |
C05 |
C04 |
H7 |
H6 |
241.2 |
120.0 |
C03 |
C04 |
H7 |
H6 |
118.8 |
240.0 |
O08 |
C09 |
H9 |
H10 |
120.0 |
119.9 |
O08 |
C09 |
H9 |
H11 |
240.0 |
240.0 |
H10 |
C09 |
H9 |
H11 |
120.0 |
120.0 |
O08 |
C09 |
H10 |
H9 |
240.0 |
240.0 |
O08 |
C09 |
H10 |
H11 |
120.0 |
120.0 |
H9 |
C09 |
H10 |
H11 |
240.0 |
240.0 |
O08 |
C09 |
H11 |
H9 |
120.0 |
120.0 |
O08 |
C09 |
H11 |
H10 |
240.0 |
240.0 |
H9 |
C09 |
H11 |
H10 |
120.0 |
120.0 |
H14 |
N35 |
C34 |
N36 |
180.0 |
180.3 |
H15 |
N35 |
C34 |
N36 |
299.9 |
0.3 |
H16 |
C14 |
C15 |
C16 |
354.8 |
360.0 |
H16 |
C14 |
C15 |
H27 |
174.9 |
180.0 |
H21 |
C27 |
C26 |
H20 |
0.1 |
359.6 |
H22 |
C28 |
C29 |
C24 |
180.0 |
180.4 |
H22 |
C28 |
C29 |
H23 |
0.0 |
0.3 |
H22 |
C28 |
C27 |
H21 |
359.9 |
359.4 |
C28 |
C29 |
H23 |
C24 |
180.0 |
180.1 |
H23 |
C29 |
C28 |
H22 |
0.0 |
0.3 |
H23 |
C29 |
C24 |
C20 |
360.0 |
1.5 |
C24 |
C20 |
H24 |
C21 |
118.7 |
120.4 |
H24 |
C20 |
C21 |
H25 |
127.8 |
66.2 |
H24 |
C20 |
C21 |
H26 |
245.5 |
186.2 |
H25 |
C21 |
C20 |
H24 |
127.8 |
66.2 |
C20 |
C21 |
H25 |
H26 |
116.2 |
120.0 |
C22 |
C21 |
H25 |
H26 |
243.8 |
240.0 |
H26 |
C21 |
C20 |
H24 |
245.5 |
186.2 |
C20 |
C21 |
H26 |
H25 |
243.8 |
240.0 |
C22 |
C21 |
H26 |
H25 |
116.2 |
120.0 |
C14 |
C15 |
H27 |
C16 |
180.0 |
180.0 |
H27 |
C15 |
C14 |
H16 |
174.9 |
180.0 |
C23 |
C22 |
H28 |
C37 |
240.0 |
120.0 |
H28 |
C22 |
C23 |
H29 |
294.0 |
300.0 |
H28 |
C22 |
C23 |
H30 |
54.0 |
60.0 |
H28 |
C22 |
C23 |
H31 |
174.0 |
180.0 |
H28 |
C22 |
C37 |
H32 |
65.9 |
60.7 |
H28 |
C22 |
C37 |
H33 |
185.9 |
180.7 |
H28 |
C22 |
C37 |
H34 |
305.9 |
300.7 |
H28 |
C22 |
C21 |
H25 |
257.5 |
186.2 |
H28 |
C22 |
C21 |
H26 |
139.9 |
66.2 |
H29 |
C23 |
C22 |
C37 |
180.0 |
60.0 |
H29 |
C23 |
C22 |
H28 |
294.0 |
300.0 |
C22 |
C23 |
H29 |
H30 |
120.0 |
120.0 |
C22 |
C23 |
H29 |
H31 |
240.0 |
240.0 |
H30 |
C23 |
H29 |
H31 |
120.0 |
120.0 |
H30 |
C23 |
C22 |
C37 |
300.0 |
180.0 |
H30 |
C23 |
C22 |
H28 |
54.0 |
60.0 |
C22 |
C23 |
H30 |
H29 |
240.0 |
240.0 |
C22 |
C23 |
H30 |
H31 |
120.0 |
120.0 |
H29 |
C23 |
H30 |
H31 |
240.0 |
240.0 |
H31 |
C23 |
C22 |
C37 |
60.0 |
300.1 |
H31 |
C23 |
C22 |
H28 |
174.0 |
180.0 |
C22 |
C23 |
H31 |
H29 |
120.0 |
119.9 |
C22 |
C23 |
H31 |
H30 |
240.0 |
240.0 |
H29 |
C23 |
H31 |
H30 |
120.0 |
120.0 |
H32 |
C37 |
C22 |
H28 |
65.9 |
60.7 |
C22 |
C37 |
H32 |
H33 |
120.0 |
120.0 |
C22 |
C37 |
H32 |
H34 |
240.0 |
240.0 |
H33 |
C37 |
H32 |
H34 |
120.0 |
120.0 |
H33 |
C37 |
C22 |
H28 |
185.9 |
180.7 |
C22 |
C37 |
H33 |
H32 |
240.0 |
240.0 |
C22 |
C37 |
H33 |
H34 |
120.0 |
120.0 |
H32 |
C37 |
H33 |
H34 |
240.0 |
240.0 |
H34 |
C37 |
C22 |
H28 |
305.9 |
300.7 |
C22 |
C37 |
H34 |
H32 |
120.0 |
120.0 |
C22 |
C37 |
H34 |
H33 |
240.0 |
239.9 |
H32 |
C37 |
H34 |
H33 |
120.0 |
120.0 |