PDB Chemical Component 52A
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 52A
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.457 |
1.454 |
| CA |
C |
1.522 |
1.508 |
| CA |
CB1 |
1.526 |
1.524 |
| CA |
CB2 |
1.536 |
1.530 |
| C |
O |
1.252 |
1.222 |
| C |
OXT |
1.246 |
1.355 |
| CB1 |
CG1 |
1.523 |
1.519 |
| CB2 |
NG2 |
1.474 |
1.470 |
| CG1 |
NG2 |
1.458 |
1.462 |
| CG1 |
CD |
1.525 |
1.490 |
| CD |
OE1 |
1.255 |
1.223 |
| CD |
OE2 |
1.257 |
1.355 |
| N |
HN1 |
1.000 |
1.000 |
| N |
HN2 |
1.000 |
0.999 |
| OXT |
HOXT |
0.950 |
0.981 |
| CB1 |
HB11 |
1.100 |
1.096 |
| CB1 |
HB12 |
1.100 |
1.099 |
| CB2 |
HB21 |
1.100 |
1.096 |
| CB2 |
HB22 |
1.100 |
1.096 |
| CG1 |
HG1 |
1.100 |
1.095 |
| NG2 |
HNG2 |
1.000 |
1.019 |
| OE2 |
HOE2 |
0.950 |
0.981 |
Bond Angles for 52A
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
C |
107.4 |
105.8 |
| N |
CA |
CB1 |
110.8 |
112.6 |
| N |
CA |
CB2 |
112.3 |
113.0 |
| CA |
N |
HN1 |
109.5 |
118.3 |
| CA |
N |
HN2 |
109.5 |
118.3 |
| C |
CA |
CB1 |
110.8 |
110.7 |
| C |
CA |
CB2 |
111.0 |
110.7 |
| CA |
C |
O |
119.8 |
125.1 |
| CA |
C |
OXT |
119.4 |
110.7 |
| CB1 |
CA |
CB2 |
104.6 |
104.3 |
| CA |
CB1 |
CG1 |
101.7 |
102.1 |
| CA |
CB1 |
HB11 |
112.1 |
113.2 |
| CA |
CB1 |
HB12 |
113.8 |
111.5 |
| CA |
CB2 |
NG2 |
107.4 |
106.3 |
| CA |
CB2 |
HB21 |
110.2 |
112.3 |
| CA |
CB2 |
HB22 |
110.6 |
112.2 |
| O |
C |
OXT |
120.8 |
124.2 |
| C |
OXT |
HOXT |
109.5 |
112.0 |
| CB1 |
CG1 |
NG2 |
106.6 |
103.9 |
| CB1 |
CG1 |
CD |
109.9 |
112.9 |
| CG1 |
CB1 |
HB11 |
112.1 |
111.6 |
| CG1 |
CB1 |
HB12 |
113.7 |
110.9 |
| CB1 |
CG1 |
HG1 |
111.2 |
111.9 |
| CB2 |
NG2 |
CG1 |
106.8 |
107.8 |
| NG2 |
CB2 |
HB21 |
110.2 |
110.5 |
| NG2 |
CB2 |
HB22 |
110.6 |
107.9 |
| CB2 |
NG2 |
HNG2 |
110.4 |
111.0 |
| NG2 |
CG1 |
CD |
110.1 |
107.4 |
| NG2 |
CG1 |
HG1 |
111.1 |
111.2 |
| CG1 |
NG2 |
HNG2 |
110.4 |
111.0 |
| CG1 |
CD |
OE1 |
119.2 |
125.1 |
| CG1 |
CD |
OE2 |
119.3 |
110.7 |
| CD |
CG1 |
HG1 |
107.9 |
109.4 |
| OE1 |
CD |
OE2 |
121.5 |
124.2 |
| CD |
OE2 |
HOE2 |
109.5 |
112.0 |
| HN1 |
N |
HN2 |
109.4 |
122.0 |
| HB11 |
CB1 |
HB12 |
103.7 |
107.6 |
| HB21 |
CB2 |
HB22 |
107.9 |
107.6 |
Torsion Angles for 52A
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C |
CA |
N |
CB1 |
121.2 |
121.0 |
| C |
CA |
N |
CB2 |
237.7 |
238.8 |
| N |
CA |
C |
O |
141.9 |
237.7 |
| N |
CA |
C |
OXT |
322.2 |
57.9 |
| CB1 |
CA |
N |
CB2 |
116.6 |
117.8 |
| N |
CA |
CB1 |
CG1 |
208.5 |
204.7 |
| N |
CA |
CB1 |
HB11 |
328.5 |
84.7 |
| N |
CA |
CB1 |
HB12 |
85.8 |
323.2 |
| N |
CA |
CB2 |
NG2 |
135.0 |
136.5 |
| N |
CA |
CB2 |
HB21 |
255.0 |
257.5 |
| N |
CA |
CB2 |
HB22 |
14.2 |
18.8 |
| HN1 |
N |
CA |
HN2 |
240.0 |
166.5 |
| N |
CA |
C |
CB1 |
238.8 |
237.8 |
| N |
CA |
C |
CB2 |
123.1 |
122.7 |
| C |
CA |
N |
HN1 |
16.7 |
89.4 |
| C |
CA |
N |
HN2 |
136.7 |
282.9 |
| CB1 |
CA |
C |
CB2 |
244.3 |
244.9 |
| C |
CA |
CB1 |
CG1 |
89.3 |
86.6 |
| C |
CA |
CB1 |
HB11 |
209.3 |
326.5 |
| C |
CA |
CB1 |
HB12 |
326.6 |
205.0 |
| C |
CA |
CB2 |
NG2 |
255.2 |
254.9 |
| C |
CA |
CB2 |
HB21 |
15.3 |
15.9 |
| C |
CA |
CB2 |
HB22 |
134.5 |
137.2 |
| O |
C |
CA |
OXT |
179.7 |
179.8 |
| CA |
C |
OXT |
HOXT |
179.7 |
179.9 |
| N |
CA |
CB1 |
C |
119.2 |
118.2 |
| N |
CA |
CB1 |
CB2 |
238.8 |
237.2 |
| CB1 |
CA |
N |
HN1 |
255.6 |
328.4 |
| CB1 |
CA |
N |
HN2 |
15.5 |
161.9 |
| C |
CA |
CB1 |
CB2 |
119.6 |
119.0 |
| CB1 |
CA |
C |
O |
263.1 |
360.0 |
| CB1 |
CA |
C |
OXT |
83.4 |
180.2 |
| CB1 |
CA |
CB2 |
NG2 |
14.8 |
13.9 |
| CB1 |
CA |
CB2 |
HB21 |
134.8 |
134.9 |
| CB1 |
CA |
CB2 |
HB22 |
254.0 |
256.2 |
| CA |
CB1 |
CG1 |
NG2 |
36.3 |
39.7 |
| CA |
CB1 |
CG1 |
CD |
155.6 |
155.7 |
| CG1 |
CB1 |
CA |
HB11 |
240.0 |
120.1 |
| CG1 |
CB1 |
CA |
HB12 |
122.7 |
241.6 |
| CA |
CB1 |
CG1 |
HG1 |
275.0 |
279.7 |
| HB11 |
CB1 |
CA |
HB12 |
242.7 |
121.5 |
| N |
CA |
CB2 |
C |
239.8 |
241.6 |
| N |
CA |
CB2 |
CB1 |
120.2 |
122.6 |
| CB2 |
CA |
N |
HN1 |
139.0 |
210.6 |
| CB2 |
CA |
N |
HN2 |
259.0 |
44.1 |
| C |
CA |
CB2 |
CB1 |
240.5 |
241.0 |
| CB2 |
CA |
C |
O |
18.8 |
115.1 |
| CB2 |
CA |
C |
OXT |
199.1 |
295.2 |
| CB2 |
CA |
CB1 |
CG1 |
329.7 |
327.5 |
| CB2 |
CA |
CB1 |
HB11 |
89.7 |
207.5 |
| CB2 |
CA |
CB1 |
HB12 |
207.0 |
86.0 |
| CA |
CB2 |
NG2 |
CG1 |
7.9 |
11.2 |
| NG2 |
CB2 |
CA |
HB21 |
240.0 |
239.0 |
| NG2 |
CB2 |
CA |
HB22 |
120.8 |
117.7 |
| CA |
CB2 |
NG2 |
HNG2 |
127.9 |
133.0 |
| HB21 |
CB2 |
CA |
HB22 |
240.8 |
238.7 |
| O |
C |
CA |
CB1 |
263.1 |
360.0 |
| O |
C |
CA |
CB2 |
18.8 |
115.1 |
| CA |
C |
O |
OXT |
180.3 |
180.2 |
| O |
C |
OXT |
HOXT |
0.0 |
0.1 |
| OXT |
C |
CA |
CB1 |
83.4 |
180.2 |
| OXT |
C |
CA |
CB2 |
199.1 |
295.2 |
| CA |
C |
OXT |
O |
179.7 |
179.8 |
| CG1 |
CB1 |
CA |
CB2 |
329.7 |
327.5 |
| CA |
CB1 |
CG1 |
HB11 |
120.0 |
238.8 |
| CA |
CB1 |
CG1 |
HB12 |
237.3 |
118.9 |
| CB2 |
NG2 |
CG1 |
CB1 |
332.1 |
328.0 |
| NG2 |
CG1 |
CB1 |
CD |
240.7 |
244.0 |
| NG2 |
CG1 |
CB1 |
HG1 |
121.3 |
120.0 |
| CB1 |
CG1 |
NG2 |
HNG2 |
212.1 |
206.2 |
| CB1 |
CG1 |
CD |
OE1 |
172.8 |
245.3 |
| CB1 |
CG1 |
CD |
OE2 |
352.7 |
65.4 |
| CD |
CG1 |
CB1 |
HG1 |
240.6 |
236.0 |
| HB11 |
CB1 |
CG1 |
HB12 |
117.3 |
240.0 |
| CA |
CB2 |
NG2 |
HB21 |
120.0 |
122.1 |
| CA |
CB2 |
NG2 |
HB22 |
239.2 |
239.5 |
| CB1 |
CG1 |
NG2 |
CB2 |
332.1 |
328.0 |
| CB2 |
NG2 |
CG1 |
CD |
212.9 |
208.2 |
| CB2 |
NG2 |
CG1 |
HG1 |
93.4 |
88.5 |
| CG1 |
NG2 |
CB2 |
HNG2 |
240.0 |
238.2 |
| HB21 |
CB2 |
NG2 |
HB22 |
119.2 |
117.4 |
| CB1 |
CG1 |
NG2 |
CD |
119.2 |
119.8 |
| NG2 |
CG1 |
CB1 |
HB11 |
276.4 |
160.9 |
| NG2 |
CG1 |
CB1 |
HB12 |
159.1 |
280.8 |
| CB1 |
CG1 |
NG2 |
HG1 |
238.6 |
239.5 |
| CG1 |
NG2 |
CB2 |
HB21 |
247.9 |
249.1 |
| CG1 |
NG2 |
CB2 |
HB22 |
128.7 |
131.7 |
| CB2 |
NG2 |
CG1 |
HNG2 |
120.0 |
121.8 |
| NG2 |
CG1 |
CD |
OE1 |
290.0 |
359.2 |
| NG2 |
CG1 |
CD |
OE2 |
109.9 |
179.3 |
| CD |
CG1 |
NG2 |
HG1 |
119.5 |
119.7 |
| CB1 |
CG1 |
CD |
NG2 |
242.9 |
246.1 |
| CD |
CG1 |
CB1 |
HB11 |
35.6 |
276.9 |
| CD |
CG1 |
CB1 |
HB12 |
278.3 |
36.8 |
| CB1 |
CG1 |
CD |
HG1 |
121.5 |
125.3 |
| NG2 |
CG1 |
CD |
HG1 |
238.6 |
239.2 |
| CD |
CG1 |
NG2 |
HNG2 |
92.9 |
86.4 |
| OE1 |
CD |
CG1 |
OE2 |
180.1 |
179.9 |
| CG1 |
CD |
OE2 |
HOE2 |
180.1 |
179.9 |
| CG1 |
CD |
OE1 |
OE2 |
179.9 |
180.1 |
| OE1 |
CD |
CG1 |
HG1 |
51.4 |
120.0 |
| OE1 |
CD |
OE2 |
HOE2 |
360.0 |
360.0 |
| CG1 |
CD |
OE2 |
OE1 |
180.1 |
179.9 |
| OE2 |
CD |
CG1 |
HG1 |
231.3 |
300.1 |
| HN1 |
N |
CA |
C |
16.7 |
89.4 |
| HN1 |
N |
CA |
CB1 |
255.6 |
328.4 |
| HN1 |
N |
CA |
CB2 |
139.0 |
210.6 |
| CA |
N |
HN1 |
HN2 |
120.0 |
194.1 |
| HN2 |
N |
CA |
C |
136.7 |
282.9 |
| HN2 |
N |
CA |
CB1 |
15.5 |
161.9 |
| HN2 |
N |
CA |
CB2 |
259.0 |
44.1 |
| CA |
N |
HN2 |
HN1 |
240.0 |
165.9 |
| HB11 |
CB1 |
CA |
CB2 |
89.7 |
207.5 |
| CA |
CB1 |
HB11 |
CG1 |
246.3 |
114.5 |
| CA |
CB1 |
HB11 |
HB12 |
123.1 |
236.4 |
| HB11 |
CB1 |
CG1 |
NG2 |
276.4 |
160.9 |
| HB11 |
CB1 |
CG1 |
CD |
35.6 |
276.9 |
| CG1 |
CB1 |
HB11 |
HB12 |
236.9 |
121.9 |
| HB11 |
CB1 |
CG1 |
HG1 |
155.1 |
40.9 |
| HB12 |
CB1 |
CA |
CB2 |
207.0 |
86.0 |
| CA |
CB1 |
HB12 |
CG1 |
115.9 |
246.9 |
| CA |
CB1 |
HB12 |
HB11 |
237.9 |
124.7 |
| HB12 |
CB1 |
CG1 |
NG2 |
159.1 |
280.8 |
| HB12 |
CB1 |
CG1 |
CD |
278.3 |
36.8 |
| CG1 |
CB1 |
HB12 |
HB11 |
122.1 |
237.7 |
| HB12 |
CB1 |
CG1 |
HG1 |
37.8 |
160.8 |
| CA |
CB2 |
HB21 |
NG2 |
241.7 |
241.5 |
| CA |
CB2 |
HB21 |
HB22 |
120.8 |
123.9 |
| HB21 |
CB2 |
NG2 |
CG1 |
247.9 |
249.1 |
| NG2 |
CB2 |
HB21 |
HB22 |
239.2 |
242.4 |
| HB21 |
CB2 |
NG2 |
HNG2 |
7.9 |
10.9 |
| CA |
CB2 |
HB22 |
NG2 |
118.9 |
116.8 |
| CA |
CB2 |
HB22 |
HB21 |
239.4 |
236.1 |
| HB22 |
CB2 |
NG2 |
CG1 |
128.7 |
131.7 |
| NG2 |
CB2 |
HB22 |
HB21 |
120.6 |
119.3 |
| HB22 |
CB2 |
NG2 |
HNG2 |
248.7 |
253.5 |
| CB1 |
CG1 |
HG1 |
NG2 |
118.6 |
115.6 |
| CB1 |
CG1 |
HG1 |
CD |
239.4 |
234.1 |
| HG1 |
CG1 |
CB1 |
HB11 |
155.1 |
40.9 |
| HG1 |
CG1 |
CB1 |
HB12 |
37.8 |
160.8 |
| NG2 |
CG1 |
HG1 |
CD |
120.7 |
118.5 |
| HG1 |
CG1 |
NG2 |
HNG2 |
333.4 |
326.6 |
| HG1 |
CG1 |
CD |
OE1 |
51.4 |
120.0 |
| HG1 |
CG1 |
CD |
OE2 |
231.3 |
300.1 |
| CB2 |
NG2 |
HNG2 |
CG1 |
242.1 |
240.1 |
| HNG2 |
NG2 |
CB2 |
HB21 |
7.9 |
10.9 |
| HNG2 |
NG2 |
CB2 |
HB22 |
248.7 |
253.5 |
| HNG2 |
NG2 |
CG1 |
CD |
92.9 |
86.4 |
| HNG2 |
NG2 |
CG1 |
HG1 |
333.4 |
326.6 |