PDB Chemical Component 520

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 520

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C1 1.365 1.390
C1 C6 1.390 1.393
C1 C2 1.391 1.393
C6 C5 1.391 1.371
C2 C3 1.390 1.371
C5 C4 1.390 1.399
C3 C4 1.391 1.400
C4 C7 1.494 1.474
O1 C7 1.221 1.217
C7 C16 1.495 1.476
C16 C17 1.390 1.398
C16 C15 1.391 1.398
C17 C18 1.391 1.377
C15 C14 1.390 1.376
C18 C19 1.390 1.395
C14 C19 1.391 1.395
C19 C10 1.393 1.483
C10 C9 1.390 1.395
C10 C11 1.389 1.393
C9 C8 1.390 1.379
C11 C12 1.390 1.380
C8 C13 1.390 1.384
C12 C13 1.390 1.383
C13 S2 1.760 1.762
S2 O3 1.436 1.421
S2 N2 1.588 1.656
S2 O2 1.435 1.421
C3 H1 1.080 1.080
C2 H2 1.080 1.080
N1 H3 1.000 0.969
N1 H4 1.000 0.971
C6 H5 1.080 1.080
C5 H6 1.080 1.080
C17 H7 1.080 1.081
C18 H8 1.080 1.080
C15 H9 1.080 1.081
C14 H10 1.080 1.080
C9 H11 1.080 1.080
C8 H12 1.080 1.080
C12 H13 1.080 1.080
C11 H14 1.080 1.080
N2 H15 1.000 0.970
N2 H16 1.000 0.971

Bond Angles for 520

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C6 120.0 119.9
C1 C6 C5 120.0 120.1
C1 C6 H5 120.0 120.0
C1 C2 H2 120.0 119.9
C6 C5 C4 120.0 119.9
C5 C6 H5 120.0 119.9
C6 C5 H6 120.0 120.1
C2 C3 C4 120.0 119.9
C2 C3 H1 120.0 120.1
C3 C4 C5 120.0 119.9
C5 C4 C7 120.0 120.1
C4 C5 H6 120.0 120.0
C3 C4 C7 120.0 120.0
C4 C3 H1 120.0 120.0
C4 C7 C16 118.9 120.0
O1 C7 C16 120.5 120.0
C7 C16 C17 120.2 120.0
C7 C16 C15 119.9 120.0
C17 C16 C15 120.0 120.0
C16 C17 C18 120.0 120.0
C16 C17 H7 120.0 120.0
C16 C15 C14 120.0 120.0
C16 C15 H9 120.0 120.0
C17 C18 C19 120.1 120.0
C18 C17 H7 120.0 120.0
C17 C18 H8 119.9 120.0
C15 C14 C19 120.1 120.0
C14 C15 H9 120.0 120.0
C15 C14 H10 119.9 119.9
C18 C19 C14 119.8 120.1
C18 C19 C10 120.3 119.9
C19 C18 H8 120.0 120.0
C14 C19 C10 119.8 120.0
C19 C14 H10 119.9 120.0
C19 C10 C9 119.9 120.1
C19 C10 C11 120.0 120.1
C9 C10 C11 120.0 119.8
C10 C9 C8 120.0 119.8
C10 C9 H11 120.0 120.0
C10 C11 C12 120.0 119.9
C10 C11 H14 120.0 120.1
C9 C8 C13 120.0 120.1
C8 C9 H11 120.0 120.1
C9 C8 H12 120.0 120.0
C11 C12 H13 120.0 120.0
C8 C13 S2 119.9 119.8
C13 C8 H12 120.0 119.9
C12 C13 S2 120.1 119.9
C13 S2 O3 105.3 106.4
C13 S2 N2 107.5 107.2
C13 S2 O2 107.4 106.4
S2 N2 H15 109.5 120.1
S2 N2 H16 109.4 120.0
H3 N1 H4 109.5 120.0
H15 N2 H16 109.5 119.9

Torsion Angles for 520

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N1 C1 C6 C5 180.0 180.0
N1 C1 C6 H5 0.0 360.0
N1 C1 C2 H2 0.0 0.0
C6 C1 C2 H2 180.0 180.0
C1 C6 C5 C4 359.9 0.0
C5 C6 C1 H5 180.0 180.0
C1 C6 C5 H6 179.9 180.0
C1 C2 C3 C4 0.0 360.0
C1 C2 C3 H1 180.0 179.7
C1 C6 C5 H5 180.0 180.0
C3 C4 C5 C6 0.1 359.9
C6 C5 C4 C7 180.2 180.2
C4 C5 C6 H6 180.0 180.0
C2 C3 C4 C5 359.9 0.1
C2 C3 C4 C7 179.8 179.8
C4 C3 C2 H1 180.0 180.2
C4 C5 C6 H5 179.9 180.0
C6 C5 C4 H6 180.0 180.0
C3 C4 C5 C7 179.9 179.7
C5 C4 C3 H1 179.9 180.3
C5 C4 C7 C16 93.8 325.8
C6 C5 C4 C3 0.1 359.9
C2 C3 C4 H1 180.0 179.8
C5 C4 C3 C7 180.1 180.3
C3 C4 C5 H6 180.1 179.9
C3 C4 C7 C16 273.9 146.1
C3 C4 C7 C5 180.1 180.3
C7 C4 C5 H6 0.2 0.2
C7 C4 C3 H1 359.8 0.0
O1 C7 C4 C16 179.8 179.9
C4 C7 C16 C17 321.3 172.5
C4 C7 C16 C15 140.9 352.1
C4 C7 O1 C16 180.2 180.1
O1 C7 C16 C17 141.4 352.5
O1 C7 C16 C15 321.1 172.2
C17 C16 C7 C15 180.3 180.3
C7 C16 C17 C18 179.5 180.0
C7 C16 C17 H7 359.5 359.9
C7 C16 C15 C14 180.4 180.0
C7 C16 C15 H9 0.5 0.0
C7 C16 C17 C15 179.7 179.7
C17 C16 C15 C14 0.1 359.7
C17 C16 C15 H9 180.2 179.7
C16 C17 C18 C19 0.0 359.9
C18 C17 C16 H7 180.0 180.1
C16 C17 C18 H8 180.0 180.0
C7 C16 C15 C17 180.3 180.3
C15 C16 C17 C18 359.9 0.3
C15 C16 C17 H7 179.9 180.3
C16 C15 C14 C19 0.0 0.0
C14 C15 C16 H9 180.0 180.0
C16 C15 C14 H10 180.0 180.0
C18 C17 C16 C15 359.9 0.3
C16 C17 C18 H7 180.0 179.9
C17 C18 C19 C14 0.1 359.8
C17 C18 C19 C10 181.9 180.0
C19 C18 C17 H8 180.0 180.0
C16 C15 C14 H9 180.0 180.0
C18 C19 C14 C15 359.8 0.3
C15 C14 C19 C10 178.1 180.0
C19 C14 C15 H10 180.0 180.0
C19 C18 C17 H7 180.0 180.0
C17 C18 C19 H8 180.0 180.0
C15 C14 C19 C18 359.8 0.3
C14 C19 C18 C10 178.2 179.8
C18 C19 C14 H10 179.8 180.3
C18 C19 C10 C9 22.9 180.0
C18 C19 C10 C11 200.1 359.8
C19 C14 C15 H9 180.0 180.0
C15 C14 C19 H10 180.0 180.0
C18 C19 C14 C10 181.7 180.2
C14 C19 C18 H8 180.1 179.7
C14 C19 C10 C9 204.7 0.2
C14 C19 C10 C11 21.9 180.0
C18 C19 C10 C14 178.2 179.8
C10 C19 C18 H8 1.9 360.0
C10 C19 C14 H10 358.1 0.0
C9 C10 C19 C11 182.8 180.2
C19 C10 C9 C8 176.7 180.0
C19 C10 C9 H11 356.7 0.1
C19 C10 C11 C12 183.3 179.7
C19 C10 C11 H14 3.3 360.0
C19 C10 C9 C11 177.2 179.8
C9 C10 C11 C12 0.5 359.5
C9 C10 C11 H14 180.6 179.8
C10 C9 C8 C13 0.1 0.0
C8 C9 C10 H11 180.0 180.0
C10 C9 C8 H12 180.1 180.0
C19 C10 C11 C9 182.8 180.2
C11 C10 C9 C8 359.5 0.2
C11 C10 C9 H11 179.5 180.3
C10 C11 C12 H13 179.9 180.3
C8 C9 C10 C11 359.5 0.2
C10 C9 C8 H11 180.0 180.0
C9 C8 C13 S2 182.9 180.0
C13 C8 C9 H12 180.0 180.1
C10 C11 C12 H14 180.0 180.3
C11 C12 C13 S2 177.1 179.7
C13 C8 C9 H11 180.1 180.0
C9 C8 C13 H12 180.0 179.9
C12 C13 C8 S2 177.5 180.0
C8 C13 S2 O3 72.1 203.5
C8 C13 S2 N2 315.8 90.0
C8 C13 S2 O2 198.1 336.4
C10 C11 C12 C13 359.9 0.6
C8 C13 C12 S2 182.5 180.0
C12 C13 C8 H12 180.4 180.1
C12 C13 S2 O3 254.6 23.5
C12 C13 S2 N2 138.2 270.0
C12 C13 S2 O2 20.6 156.4
S2 C13 C8 H12 2.9 0.1
C13 S2 N2 H15 180.0 150.0
C13 S2 N2 H16 300.0 329.9
C13 S2 O3 N2 244.8 245.9
C13 S2 O3 O2 119.5 123.0
C13 S2 N2 O3 113.7 113.5
C13 S2 N2 O2 243.7 246.4
H15 N2 S2 H16 240.0 180.1
C13 S2 O2 O3 241.6 237.1
C13 S2 O2 N2 116.4 114.1
C2 C3 H1 C4 180.0 180.2
H1 C3 C4 C5 179.9 180.3
H1 C3 C4 C7 359.8 0.0
H2 C2 C3 C4 180.0 180.0
H2 C2 C3 H1 0.0 359.7
H3 N1 C1 C6 180.0 359.9
H4 N1 C1 C6 300.0 180.0
C1 C6 H5 C5 180.0 180.0
H5 C6 C5 C4 179.9 180.0
H5 C6 C5 H6 359.9 0.0
C6 C5 H6 C4 180.0 180.0
H6 C5 C6 H5 359.9 0.0
H6 C5 C4 C7 0.2 0.2
H7 C17 C16 C15 179.9 180.3
C16 C17 H7 C18 180.0 180.1
H7 C17 C18 C19 180.0 180.0
H7 C17 C18 H8 0.0 0.0
C17 C18 H8 C19 180.0 180.0
H8 C18 C17 H7 0.0 0.0
H8 C18 C19 C14 180.1 179.7
H8 C18 C19 C10 1.9 360.0
C16 C15 H9 C14 180.0 180.0
H9 C15 C14 C19 180.0 180.0
H9 C15 C14 H10 0.0 0.0
C15 C14 H10 C19 180.0 180.0
H10 C14 C15 H9 0.0 0.0
H10 C14 C19 C10 358.1 0.0
H11 C9 C10 C11 179.5 180.3
C10 C9 H11 C8 180.0 180.0
H11 C9 C8 C13 180.1 180.0
H11 C9 C8 H12 0.1 359.9
C9 C8 H12 C13 180.0 180.1
H12 C8 C9 H11 0.1 359.9
H12 C8 C13 S2 2.9 0.1
H13 C12 C13 S2 357.2 360.0
C10 C11 H14 C12 180.0 179.7
H14 C11 C12 H13 359.9 0.0
S2 N2 H15 H16 120.0 179.9
S2 N2 H16 H15 240.0 180.1