PDB Chemical Component 520
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 520
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N1 |
C1 |
1.365 |
1.390 |
C1 |
C6 |
1.390 |
1.393 |
C1 |
C2 |
1.391 |
1.393 |
C6 |
C5 |
1.391 |
1.371 |
C2 |
C3 |
1.390 |
1.371 |
C5 |
C4 |
1.390 |
1.399 |
C3 |
C4 |
1.391 |
1.400 |
C4 |
C7 |
1.494 |
1.474 |
O1 |
C7 |
1.221 |
1.217 |
C7 |
C16 |
1.495 |
1.476 |
C16 |
C17 |
1.390 |
1.398 |
C16 |
C15 |
1.391 |
1.398 |
C17 |
C18 |
1.391 |
1.377 |
C15 |
C14 |
1.390 |
1.376 |
C18 |
C19 |
1.390 |
1.395 |
C14 |
C19 |
1.391 |
1.395 |
C19 |
C10 |
1.393 |
1.483 |
C10 |
C9 |
1.390 |
1.395 |
C10 |
C11 |
1.389 |
1.393 |
C9 |
C8 |
1.390 |
1.379 |
C11 |
C12 |
1.390 |
1.380 |
C8 |
C13 |
1.390 |
1.384 |
C12 |
C13 |
1.390 |
1.383 |
C13 |
S2 |
1.760 |
1.762 |
S2 |
O3 |
1.436 |
1.421 |
S2 |
N2 |
1.588 |
1.656 |
S2 |
O2 |
1.435 |
1.421 |
C3 |
H1 |
1.080 |
1.080 |
C2 |
H2 |
1.080 |
1.080 |
N1 |
H3 |
1.000 |
0.969 |
N1 |
H4 |
1.000 |
0.971 |
C6 |
H5 |
1.080 |
1.080 |
C5 |
H6 |
1.080 |
1.080 |
C17 |
H7 |
1.080 |
1.081 |
C18 |
H8 |
1.080 |
1.080 |
C15 |
H9 |
1.080 |
1.081 |
C14 |
H10 |
1.080 |
1.080 |
C9 |
H11 |
1.080 |
1.080 |
C8 |
H12 |
1.080 |
1.080 |
C12 |
H13 |
1.080 |
1.080 |
C11 |
H14 |
1.080 |
1.080 |
N2 |
H15 |
1.000 |
0.970 |
N2 |
H16 |
1.000 |
0.971 |
Bond Angles for 520
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
C6 |
120.0 |
119.9 |
C1 |
C6 |
C5 |
120.0 |
120.1 |
C1 |
C6 |
H5 |
120.0 |
120.0 |
C1 |
C2 |
H2 |
120.0 |
119.9 |
C6 |
C5 |
C4 |
120.0 |
119.9 |
C5 |
C6 |
H5 |
120.0 |
119.9 |
C6 |
C5 |
H6 |
120.0 |
120.1 |
C2 |
C3 |
C4 |
120.0 |
119.9 |
C2 |
C3 |
H1 |
120.0 |
120.1 |
C3 |
C4 |
C5 |
120.0 |
119.9 |
C5 |
C4 |
C7 |
120.0 |
120.1 |
C4 |
C5 |
H6 |
120.0 |
120.0 |
C3 |
C4 |
C7 |
120.0 |
120.0 |
C4 |
C3 |
H1 |
120.0 |
120.0 |
C4 |
C7 |
C16 |
118.9 |
120.0 |
O1 |
C7 |
C16 |
120.5 |
120.0 |
C7 |
C16 |
C17 |
120.2 |
120.0 |
C7 |
C16 |
C15 |
119.9 |
120.0 |
C17 |
C16 |
C15 |
120.0 |
120.0 |
C16 |
C17 |
C18 |
120.0 |
120.0 |
C16 |
C17 |
H7 |
120.0 |
120.0 |
C16 |
C15 |
C14 |
120.0 |
120.0 |
C16 |
C15 |
H9 |
120.0 |
120.0 |
C17 |
C18 |
C19 |
120.1 |
120.0 |
C18 |
C17 |
H7 |
120.0 |
120.0 |
C17 |
C18 |
H8 |
119.9 |
120.0 |
C15 |
C14 |
C19 |
120.1 |
120.0 |
C14 |
C15 |
H9 |
120.0 |
120.0 |
C15 |
C14 |
H10 |
119.9 |
119.9 |
C18 |
C19 |
C14 |
119.8 |
120.1 |
C18 |
C19 |
C10 |
120.3 |
119.9 |
C19 |
C18 |
H8 |
120.0 |
120.0 |
C14 |
C19 |
C10 |
119.8 |
120.0 |
C19 |
C14 |
H10 |
119.9 |
120.0 |
C19 |
C10 |
C9 |
119.9 |
120.1 |
C19 |
C10 |
C11 |
120.0 |
120.1 |
C9 |
C10 |
C11 |
120.0 |
119.8 |
C10 |
C9 |
C8 |
120.0 |
119.8 |
C10 |
C9 |
H11 |
120.0 |
120.0 |
C10 |
C11 |
C12 |
120.0 |
119.9 |
C10 |
C11 |
H14 |
120.0 |
120.1 |
C9 |
C8 |
C13 |
120.0 |
120.1 |
C8 |
C9 |
H11 |
120.0 |
120.1 |
C9 |
C8 |
H12 |
120.0 |
120.0 |
C11 |
C12 |
H13 |
120.0 |
120.0 |
C8 |
C13 |
S2 |
119.9 |
119.8 |
C13 |
C8 |
H12 |
120.0 |
119.9 |
C12 |
C13 |
S2 |
120.1 |
119.9 |
C13 |
S2 |
O3 |
105.3 |
106.4 |
C13 |
S2 |
N2 |
107.5 |
107.2 |
C13 |
S2 |
O2 |
107.4 |
106.4 |
S2 |
N2 |
H15 |
109.5 |
120.1 |
S2 |
N2 |
H16 |
109.4 |
120.0 |
H3 |
N1 |
H4 |
109.5 |
120.0 |
H15 |
N2 |
H16 |
109.5 |
119.9 |
Torsion Angles for 520
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N1 |
C1 |
C6 |
C5 |
180.0 |
180.0 |
N1 |
C1 |
C6 |
H5 |
0.0 |
360.0 |
N1 |
C1 |
C2 |
H2 |
0.0 |
0.0 |
C6 |
C1 |
C2 |
H2 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
C4 |
359.9 |
0.0 |
C5 |
C6 |
C1 |
H5 |
180.0 |
180.0 |
C1 |
C6 |
C5 |
H6 |
179.9 |
180.0 |
C1 |
C2 |
C3 |
C4 |
0.0 |
360.0 |
C1 |
C2 |
C3 |
H1 |
180.0 |
179.7 |
C1 |
C6 |
C5 |
H5 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
0.1 |
359.9 |
C6 |
C5 |
C4 |
C7 |
180.2 |
180.2 |
C4 |
C5 |
C6 |
H6 |
180.0 |
180.0 |
C2 |
C3 |
C4 |
C5 |
359.9 |
0.1 |
C2 |
C3 |
C4 |
C7 |
179.8 |
179.8 |
C4 |
C3 |
C2 |
H1 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
H5 |
179.9 |
180.0 |
C6 |
C5 |
C4 |
H6 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C7 |
179.9 |
179.7 |
C5 |
C4 |
C3 |
H1 |
179.9 |
180.3 |
C5 |
C4 |
C7 |
C16 |
93.8 |
325.8 |
C6 |
C5 |
C4 |
C3 |
0.1 |
359.9 |
C2 |
C3 |
C4 |
H1 |
180.0 |
179.8 |
C5 |
C4 |
C3 |
C7 |
180.1 |
180.3 |
C3 |
C4 |
C5 |
H6 |
180.1 |
179.9 |
C3 |
C4 |
C7 |
C16 |
273.9 |
146.1 |
C3 |
C4 |
C7 |
C5 |
180.1 |
180.3 |
C7 |
C4 |
C5 |
H6 |
0.2 |
0.2 |
C7 |
C4 |
C3 |
H1 |
359.8 |
0.0 |
O1 |
C7 |
C4 |
C16 |
179.8 |
179.9 |
C4 |
C7 |
C16 |
C17 |
321.3 |
172.5 |
C4 |
C7 |
C16 |
C15 |
140.9 |
352.1 |
C4 |
C7 |
O1 |
C16 |
180.2 |
180.1 |
O1 |
C7 |
C16 |
C17 |
141.4 |
352.5 |
O1 |
C7 |
C16 |
C15 |
321.1 |
172.2 |
C17 |
C16 |
C7 |
C15 |
180.3 |
180.3 |
C7 |
C16 |
C17 |
C18 |
179.5 |
180.0 |
C7 |
C16 |
C17 |
H7 |
359.5 |
359.9 |
C7 |
C16 |
C15 |
C14 |
180.4 |
180.0 |
C7 |
C16 |
C15 |
H9 |
0.5 |
0.0 |
C7 |
C16 |
C17 |
C15 |
179.7 |
179.7 |
C17 |
C16 |
C15 |
C14 |
0.1 |
359.7 |
C17 |
C16 |
C15 |
H9 |
180.2 |
179.7 |
C16 |
C17 |
C18 |
C19 |
0.0 |
359.9 |
C18 |
C17 |
C16 |
H7 |
180.0 |
180.1 |
C16 |
C17 |
C18 |
H8 |
180.0 |
180.0 |
C7 |
C16 |
C15 |
C17 |
180.3 |
180.3 |
C15 |
C16 |
C17 |
C18 |
359.9 |
0.3 |
C15 |
C16 |
C17 |
H7 |
179.9 |
180.3 |
C16 |
C15 |
C14 |
C19 |
0.0 |
0.0 |
C14 |
C15 |
C16 |
H9 |
180.0 |
180.0 |
C16 |
C15 |
C14 |
H10 |
180.0 |
180.0 |
C18 |
C17 |
C16 |
C15 |
359.9 |
0.3 |
C16 |
C17 |
C18 |
H7 |
180.0 |
179.9 |
C17 |
C18 |
C19 |
C14 |
0.1 |
359.8 |
C17 |
C18 |
C19 |
C10 |
181.9 |
180.0 |
C19 |
C18 |
C17 |
H8 |
180.0 |
180.0 |
C16 |
C15 |
C14 |
H9 |
180.0 |
180.0 |
C18 |
C19 |
C14 |
C15 |
359.8 |
0.3 |
C15 |
C14 |
C19 |
C10 |
178.1 |
180.0 |
C19 |
C14 |
C15 |
H10 |
180.0 |
180.0 |
C19 |
C18 |
C17 |
H7 |
180.0 |
180.0 |
C17 |
C18 |
C19 |
H8 |
180.0 |
180.0 |
C15 |
C14 |
C19 |
C18 |
359.8 |
0.3 |
C14 |
C19 |
C18 |
C10 |
178.2 |
179.8 |
C18 |
C19 |
C14 |
H10 |
179.8 |
180.3 |
C18 |
C19 |
C10 |
C9 |
22.9 |
180.0 |
C18 |
C19 |
C10 |
C11 |
200.1 |
359.8 |
C19 |
C14 |
C15 |
H9 |
180.0 |
180.0 |
C15 |
C14 |
C19 |
H10 |
180.0 |
180.0 |
C18 |
C19 |
C14 |
C10 |
181.7 |
180.2 |
C14 |
C19 |
C18 |
H8 |
180.1 |
179.7 |
C14 |
C19 |
C10 |
C9 |
204.7 |
0.2 |
C14 |
C19 |
C10 |
C11 |
21.9 |
180.0 |
C18 |
C19 |
C10 |
C14 |
178.2 |
179.8 |
C10 |
C19 |
C18 |
H8 |
1.9 |
360.0 |
C10 |
C19 |
C14 |
H10 |
358.1 |
0.0 |
C9 |
C10 |
C19 |
C11 |
182.8 |
180.2 |
C19 |
C10 |
C9 |
C8 |
176.7 |
180.0 |
C19 |
C10 |
C9 |
H11 |
356.7 |
0.1 |
C19 |
C10 |
C11 |
C12 |
183.3 |
179.7 |
C19 |
C10 |
C11 |
H14 |
3.3 |
360.0 |
C19 |
C10 |
C9 |
C11 |
177.2 |
179.8 |
C9 |
C10 |
C11 |
C12 |
0.5 |
359.5 |
C9 |
C10 |
C11 |
H14 |
180.6 |
179.8 |
C10 |
C9 |
C8 |
C13 |
0.1 |
0.0 |
C8 |
C9 |
C10 |
H11 |
180.0 |
180.0 |
C10 |
C9 |
C8 |
H12 |
180.1 |
180.0 |
C19 |
C10 |
C11 |
C9 |
182.8 |
180.2 |
C11 |
C10 |
C9 |
C8 |
359.5 |
0.2 |
C11 |
C10 |
C9 |
H11 |
179.5 |
180.3 |
C10 |
C11 |
C12 |
H13 |
179.9 |
180.3 |
C8 |
C9 |
C10 |
C11 |
359.5 |
0.2 |
C10 |
C9 |
C8 |
H11 |
180.0 |
180.0 |
C9 |
C8 |
C13 |
S2 |
182.9 |
180.0 |
C13 |
C8 |
C9 |
H12 |
180.0 |
180.1 |
C10 |
C11 |
C12 |
H14 |
180.0 |
180.3 |
C11 |
C12 |
C13 |
S2 |
177.1 |
179.7 |
C13 |
C8 |
C9 |
H11 |
180.1 |
180.0 |
C9 |
C8 |
C13 |
H12 |
180.0 |
179.9 |
C12 |
C13 |
C8 |
S2 |
177.5 |
180.0 |
C8 |
C13 |
S2 |
O3 |
72.1 |
203.5 |
C8 |
C13 |
S2 |
N2 |
315.8 |
90.0 |
C8 |
C13 |
S2 |
O2 |
198.1 |
336.4 |
C10 |
C11 |
C12 |
C13 |
359.9 |
0.6 |
C8 |
C13 |
C12 |
S2 |
182.5 |
180.0 |
C12 |
C13 |
C8 |
H12 |
180.4 |
180.1 |
C12 |
C13 |
S2 |
O3 |
254.6 |
23.5 |
C12 |
C13 |
S2 |
N2 |
138.2 |
270.0 |
C12 |
C13 |
S2 |
O2 |
20.6 |
156.4 |
S2 |
C13 |
C8 |
H12 |
2.9 |
0.1 |
C13 |
S2 |
N2 |
H15 |
180.0 |
150.0 |
C13 |
S2 |
N2 |
H16 |
300.0 |
329.9 |
C13 |
S2 |
O3 |
N2 |
244.8 |
245.9 |
C13 |
S2 |
O3 |
O2 |
119.5 |
123.0 |
C13 |
S2 |
N2 |
O3 |
113.7 |
113.5 |
C13 |
S2 |
N2 |
O2 |
243.7 |
246.4 |
H15 |
N2 |
S2 |
H16 |
240.0 |
180.1 |
C13 |
S2 |
O2 |
O3 |
241.6 |
237.1 |
C13 |
S2 |
O2 |
N2 |
116.4 |
114.1 |
C2 |
C3 |
H1 |
C4 |
180.0 |
180.2 |
H1 |
C3 |
C4 |
C5 |
179.9 |
180.3 |
H1 |
C3 |
C4 |
C7 |
359.8 |
0.0 |
H2 |
C2 |
C3 |
C4 |
180.0 |
180.0 |
H2 |
C2 |
C3 |
H1 |
0.0 |
359.7 |
H3 |
N1 |
C1 |
C6 |
180.0 |
359.9 |
H4 |
N1 |
C1 |
C6 |
300.0 |
180.0 |
C1 |
C6 |
H5 |
C5 |
180.0 |
180.0 |
H5 |
C6 |
C5 |
C4 |
179.9 |
180.0 |
H5 |
C6 |
C5 |
H6 |
359.9 |
0.0 |
C6 |
C5 |
H6 |
C4 |
180.0 |
180.0 |
H6 |
C5 |
C6 |
H5 |
359.9 |
0.0 |
H6 |
C5 |
C4 |
C7 |
0.2 |
0.2 |
H7 |
C17 |
C16 |
C15 |
179.9 |
180.3 |
C16 |
C17 |
H7 |
C18 |
180.0 |
180.1 |
H7 |
C17 |
C18 |
C19 |
180.0 |
180.0 |
H7 |
C17 |
C18 |
H8 |
0.0 |
0.0 |
C17 |
C18 |
H8 |
C19 |
180.0 |
180.0 |
H8 |
C18 |
C17 |
H7 |
0.0 |
0.0 |
H8 |
C18 |
C19 |
C14 |
180.1 |
179.7 |
H8 |
C18 |
C19 |
C10 |
1.9 |
360.0 |
C16 |
C15 |
H9 |
C14 |
180.0 |
180.0 |
H9 |
C15 |
C14 |
C19 |
180.0 |
180.0 |
H9 |
C15 |
C14 |
H10 |
0.0 |
0.0 |
C15 |
C14 |
H10 |
C19 |
180.0 |
180.0 |
H10 |
C14 |
C15 |
H9 |
0.0 |
0.0 |
H10 |
C14 |
C19 |
C10 |
358.1 |
0.0 |
H11 |
C9 |
C10 |
C11 |
179.5 |
180.3 |
C10 |
C9 |
H11 |
C8 |
180.0 |
180.0 |
H11 |
C9 |
C8 |
C13 |
180.1 |
180.0 |
H11 |
C9 |
C8 |
H12 |
0.1 |
359.9 |
C9 |
C8 |
H12 |
C13 |
180.0 |
180.1 |
H12 |
C8 |
C9 |
H11 |
0.1 |
359.9 |
H12 |
C8 |
C13 |
S2 |
2.9 |
0.1 |
H13 |
C12 |
C13 |
S2 |
357.2 |
360.0 |
C10 |
C11 |
H14 |
C12 |
180.0 |
179.7 |
H14 |
C11 |
C12 |
H13 |
359.9 |
0.0 |
S2 |
N2 |
H15 |
H16 |
120.0 |
179.9 |
S2 |
N2 |
H16 |
H15 |
240.0 |
180.1 |