Atom Nomenclature for 51K

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 51K

Atom Name (V3) Atom Name (V2)
F26 F26
C23 C23
F24 F24
F25 F25
C17 C17
C16 C16
C18 C18
C13 C13
C14 C14
C15 C15
C19 C19
F22 F22
F20 F20
F21 F21
C10 C10
N9 N9
N8 N8
C12 C12
N11 N11
C7 C7
C6 C6
C5 C5
N4 N4
N3 N3
C2 C2
O1 O1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9