PDB Chemical Component 51J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 51J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O14 |
S13 |
1.432 |
1.421 |
| S13 |
O15 |
1.401 |
1.421 |
| S13 |
N16 |
1.630 |
1.656 |
| S13 |
C11 |
1.663 |
1.763 |
| N16 |
C19 |
1.457 |
1.465 |
| C19 |
C20 |
1.454 |
1.472 |
| C20 |
C21 |
1.173 |
1.174 |
| C21 |
C29 |
1.451 |
1.472 |
| C11 |
C10 |
1.473 |
1.396 |
| C11 |
C12 |
1.420 |
1.379 |
| C10 |
C9 |
1.385 |
1.396 |
| C10 |
C17 |
1.487 |
1.477 |
| C9 |
C8 |
1.378 |
1.379 |
| C17 |
O17 |
1.254 |
1.348 |
| C17 |
O18 |
1.238 |
1.215 |
| C12 |
C7 |
1.413 |
1.384 |
| C7 |
C8 |
1.411 |
1.384 |
| C7 |
S1 |
1.704 |
1.762 |
| S1 |
O6 |
1.465 |
1.421 |
| S1 |
O5 |
1.423 |
1.421 |
| S1 |
N7 |
1.574 |
1.657 |
| N16 |
H16 |
1.000 |
0.970 |
| C19 |
H191 |
1.100 |
1.090 |
| C19 |
H192 |
1.100 |
1.090 |
| C29 |
H291 |
1.101 |
1.090 |
| C29 |
H292 |
1.100 |
1.090 |
| C29 |
H293 |
1.100 |
1.090 |
| C12 |
H12 |
1.080 |
1.081 |
| C9 |
H9 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.080 |
| O17 |
H17 |
0.951 |
0.967 |
| N7 |
H7A |
1.000 |
0.970 |
| N7 |
H7B |
1.000 |
0.970 |
Bond Angles for 51J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O14 |
S13 |
O15 |
116.8 |
123.2 |
| O14 |
S13 |
N16 |
106.4 |
106.4 |
| O14 |
S13 |
C11 |
109.2 |
106.4 |
| O15 |
S13 |
N16 |
104.9 |
106.4 |
| O15 |
S13 |
C11 |
110.7 |
106.4 |
| N16 |
S13 |
C11 |
108.4 |
107.2 |
| S13 |
N16 |
C19 |
116.6 |
120.0 |
| S13 |
N16 |
H16 |
107.7 |
120.0 |
| S13 |
C11 |
C10 |
123.4 |
120.1 |
| S13 |
C11 |
C12 |
119.4 |
120.1 |
| N16 |
C19 |
C20 |
111.7 |
109.5 |
| C19 |
N16 |
H16 |
107.6 |
120.0 |
| N16 |
C19 |
H191 |
108.9 |
109.5 |
| N16 |
C19 |
H192 |
108.9 |
109.4 |
| C19 |
C20 |
C21 |
179.2 |
179.9 |
| C20 |
C19 |
H191 |
108.9 |
109.5 |
| C20 |
C19 |
H192 |
108.9 |
109.5 |
| C20 |
C21 |
C29 |
179.5 |
179.9 |
| C21 |
C29 |
H291 |
109.5 |
109.4 |
| C21 |
C29 |
H292 |
109.5 |
109.5 |
| C21 |
C29 |
H293 |
109.5 |
109.5 |
| C10 |
C11 |
C12 |
117.2 |
119.8 |
| C11 |
C10 |
C9 |
116.8 |
119.7 |
| C11 |
C10 |
C17 |
122.8 |
120.1 |
| C11 |
C12 |
C7 |
124.3 |
120.2 |
| C11 |
C12 |
H12 |
117.9 |
119.9 |
| C9 |
C10 |
C17 |
120.1 |
120.2 |
| C10 |
C9 |
C8 |
124.1 |
119.9 |
| C10 |
C9 |
H9 |
117.9 |
120.0 |
| C10 |
C17 |
O17 |
118.5 |
120.0 |
| C10 |
C17 |
O18 |
118.8 |
120.0 |
| C9 |
C8 |
C7 |
121.5 |
120.1 |
| C8 |
C9 |
H9 |
117.9 |
120.1 |
| C9 |
C8 |
H8 |
119.2 |
119.9 |
| O17 |
C17 |
O18 |
122.6 |
120.0 |
| C17 |
O17 |
H17 |
109.5 |
117.0 |
| C12 |
C7 |
C8 |
115.7 |
120.3 |
| C12 |
C7 |
S1 |
121.5 |
119.9 |
| C7 |
C12 |
H12 |
117.8 |
119.9 |
| C8 |
C7 |
S1 |
122.4 |
119.8 |
| C7 |
C8 |
H8 |
119.2 |
119.9 |
| C7 |
S1 |
O6 |
105.4 |
106.4 |
| C7 |
S1 |
O5 |
107.0 |
106.4 |
| C7 |
S1 |
N7 |
108.8 |
107.2 |
| O6 |
S1 |
O5 |
117.4 |
123.2 |
| O6 |
S1 |
N7 |
110.2 |
106.4 |
| O5 |
S1 |
N7 |
107.8 |
106.4 |
| S1 |
N7 |
H7A |
109.5 |
120.0 |
| S1 |
N7 |
H7B |
109.5 |
119.9 |
| H191 |
C19 |
H192 |
109.5 |
109.5 |
| H291 |
C29 |
H292 |
109.5 |
109.5 |
| H291 |
C29 |
H293 |
109.5 |
109.5 |
| H292 |
C29 |
H293 |
109.4 |
109.5 |
| H7A |
N7 |
H7B |
109.5 |
120.1 |
Torsion Angles for 51J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O15 |
S13 |
O14 |
N16 |
243.4 |
237.1 |
| O15 |
S13 |
O14 |
C11 |
126.6 |
123.0 |
| N16 |
S13 |
O14 |
C11 |
243.2 |
245.9 |
| O14 |
S13 |
N16 |
C19 |
47.0 |
175.8 |
| O14 |
S13 |
N16 |
H16 |
168.0 |
355.8 |
| O14 |
S13 |
C11 |
C10 |
185.3 |
309.2 |
| O14 |
S13 |
C11 |
C12 |
4.6 |
129.0 |
| O14 |
S13 |
O15 |
N16 |
117.5 |
123.0 |
| O14 |
S13 |
O15 |
C11 |
234.2 |
237.0 |
| N16 |
S13 |
O15 |
C11 |
116.7 |
114.1 |
| O15 |
S13 |
N16 |
C19 |
171.4 |
308.7 |
| O15 |
S13 |
N16 |
H16 |
292.4 |
128.8 |
| O15 |
S13 |
C11 |
C10 |
55.3 |
176.3 |
| O15 |
S13 |
C11 |
C12 |
234.6 |
356.0 |
| O14 |
S13 |
N16 |
O15 |
235.6 |
227.1 |
| O14 |
S13 |
N16 |
C11 |
117.4 |
113.6 |
| O15 |
S13 |
N16 |
C11 |
241.7 |
246.5 |
| N16 |
S13 |
C11 |
C10 |
300.9 |
62.8 |
| N16 |
S13 |
C11 |
C12 |
120.1 |
242.5 |
| S13 |
N16 |
C19 |
C20 |
201.1 |
165.0 |
| C19 |
N16 |
S13 |
H16 |
239.0 |
180.0 |
| S13 |
N16 |
C19 |
H191 |
321.5 |
285.1 |
| S13 |
N16 |
C19 |
H192 |
80.8 |
45.1 |
| O14 |
S13 |
C11 |
O15 |
130.0 |
132.9 |
| O14 |
S13 |
C11 |
N16 |
244.5 |
246.4 |
| O15 |
S13 |
C11 |
N16 |
114.5 |
113.5 |
| C11 |
S13 |
N16 |
C19 |
289.6 |
62.2 |
| C11 |
S13 |
N16 |
H16 |
50.6 |
242.3 |
| C10 |
C11 |
S13 |
C12 |
180.8 |
180.3 |
| S13 |
C11 |
C10 |
C9 |
180.6 |
180.0 |
| S13 |
C11 |
C10 |
C17 |
354.5 |
359.9 |
| S13 |
C11 |
C12 |
C7 |
183.7 |
180.0 |
| S13 |
C11 |
C12 |
H12 |
3.7 |
360.0 |
| C19 |
N16 |
S13 |
C11 |
289.6 |
62.2 |
| S13 |
N16 |
C19 |
H16 |
121.0 |
180.0 |
| N16 |
C19 |
C20 |
C21 |
59.7 |
178.7 |
| C20 |
C19 |
N16 |
H191 |
239.6 |
240.0 |
| C20 |
C19 |
N16 |
H192 |
120.3 |
120.0 |
| H191 |
C19 |
N16 |
H192 |
240.7 |
240.0 |
| C20 |
C19 |
N16 |
H16 |
80.1 |
345.0 |
| N16 |
C19 |
C20 |
H191 |
120.3 |
120.0 |
| N16 |
C19 |
C20 |
H192 |
239.7 |
240.1 |
| C19 |
C20 |
C21 |
C29 |
329.5 |
180.0 |
| H191 |
C19 |
C20 |
H192 |
119.4 |
120.1 |
| C21 |
C20 |
C19 |
H191 |
299.3 |
58.7 |
| C21 |
C20 |
C19 |
H192 |
180.0 |
298.6 |
| C20 |
C21 |
C29 |
H291 |
180.0 |
181.3 |
| C20 |
C21 |
C29 |
H292 |
300.0 |
301.3 |
| C20 |
C21 |
C29 |
H293 |
60.0 |
61.3 |
| H291 |
C29 |
C21 |
H292 |
240.0 |
240.0 |
| H291 |
C29 |
C21 |
H293 |
120.0 |
120.0 |
| H292 |
C29 |
C21 |
H293 |
240.0 |
240.0 |
| S13 |
C11 |
C10 |
C12 |
179.3 |
179.7 |
| C10 |
C11 |
C12 |
C7 |
3.0 |
359.8 |
| C10 |
C11 |
C12 |
H12 |
183.0 |
179.7 |
| C9 |
C10 |
C11 |
C17 |
186.1 |
180.1 |
| C11 |
C10 |
C9 |
C8 |
356.5 |
360.0 |
| C11 |
C10 |
C9 |
H9 |
176.5 |
180.0 |
| C11 |
C10 |
C17 |
O17 |
244.0 |
173.5 |
| C11 |
C10 |
C17 |
O18 |
62.0 |
353.6 |
| S13 |
C11 |
C12 |
C10 |
180.7 |
180.3 |
| C12 |
C11 |
C10 |
C9 |
1.4 |
0.3 |
| C12 |
C11 |
C10 |
C17 |
175.3 |
180.2 |
| C11 |
C12 |
C7 |
C8 |
354.8 |
359.9 |
| C11 |
C12 |
C7 |
S1 |
181.0 |
180.0 |
| C7 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
| C9 |
C10 |
C11 |
C12 |
1.4 |
0.3 |
| C11 |
C10 |
C9 |
C17 |
174.1 |
179.9 |
| C9 |
C10 |
C17 |
O17 |
57.7 |
353.4 |
| C9 |
C10 |
C17 |
O18 |
235.7 |
173.5 |
| C10 |
C9 |
C8 |
C7 |
1.3 |
359.7 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.0 |
| C10 |
C9 |
C8 |
H8 |
181.3 |
180.0 |
| C17 |
C10 |
C11 |
C12 |
175.3 |
180.2 |
| C11 |
C10 |
C17 |
C9 |
186.3 |
180.1 |
| C17 |
C10 |
C9 |
C8 |
182.4 |
180.0 |
| C17 |
C10 |
C9 |
H9 |
2.4 |
0.1 |
| O17 |
C17 |
C10 |
O18 |
182.0 |
179.9 |
| C10 |
C17 |
O17 |
H17 |
177.9 |
180.0 |
| C8 |
C9 |
C10 |
C17 |
182.4 |
180.0 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
180.0 |
| C12 |
C7 |
C8 |
C9 |
3.0 |
0.3 |
| C9 |
C8 |
C7 |
S1 |
176.8 |
180.3 |
| C7 |
C8 |
C9 |
H8 |
180.0 |
179.7 |
| C10 |
C17 |
O17 |
O18 |
177.9 |
180.0 |
| C10 |
C17 |
O18 |
O17 |
182.1 |
179.9 |
| O18 |
C17 |
O17 |
H17 |
0.0 |
360.0 |
| C11 |
C12 |
C7 |
H12 |
180.0 |
179.9 |
| C9 |
C8 |
C7 |
C12 |
3.0 |
0.3 |
| C8 |
C7 |
C12 |
S1 |
173.8 |
179.9 |
| C12 |
C7 |
C8 |
H8 |
183.0 |
180.0 |
| C12 |
C7 |
S1 |
O6 |
47.2 |
203.5 |
| C12 |
C7 |
S1 |
O5 |
281.5 |
336.4 |
| C12 |
C7 |
S1 |
N7 |
165.4 |
90.0 |
| C7 |
C8 |
C9 |
H9 |
181.3 |
179.7 |
| C9 |
C8 |
C7 |
H8 |
180.0 |
180.3 |
| C12 |
C7 |
C8 |
S1 |
186.2 |
180.1 |
| C8 |
C7 |
C12 |
H12 |
174.8 |
180.0 |
| C8 |
C7 |
S1 |
O6 |
233.8 |
23.6 |
| C8 |
C7 |
S1 |
O5 |
108.1 |
156.5 |
| C8 |
C7 |
S1 |
N7 |
352.0 |
270.0 |
| C12 |
C7 |
S1 |
C8 |
173.4 |
179.9 |
| S1 |
C7 |
C12 |
H12 |
1.0 |
0.1 |
| S1 |
C7 |
C8 |
H8 |
356.8 |
360.0 |
| O6 |
S1 |
C7 |
O5 |
125.7 |
227.1 |
| O6 |
S1 |
C7 |
N7 |
241.9 |
113.6 |
| O5 |
S1 |
C7 |
N7 |
116.2 |
246.5 |
| C7 |
S1 |
N7 |
H7A |
180.0 |
0.0 |
| C7 |
S1 |
N7 |
H7B |
300.0 |
180.0 |
| C7 |
S1 |
O6 |
O5 |
241.0 |
122.9 |
| C7 |
S1 |
O6 |
N7 |
117.2 |
245.9 |
| O5 |
S1 |
O6 |
N7 |
236.1 |
123.0 |
| O6 |
S1 |
N7 |
H7A |
295.0 |
246.5 |
| O6 |
S1 |
N7 |
H7B |
55.1 |
66.5 |
| C7 |
S1 |
O5 |
O6 |
118.1 |
237.0 |
| C7 |
S1 |
O5 |
N7 |
243.2 |
114.1 |
| O6 |
S1 |
O5 |
N7 |
125.1 |
237.0 |
| O5 |
S1 |
N7 |
H7A |
64.3 |
113.5 |
| O5 |
S1 |
N7 |
H7B |
184.3 |
293.5 |
| C7 |
S1 |
N7 |
O6 |
245.0 |
113.5 |
| C7 |
S1 |
N7 |
O5 |
115.7 |
246.5 |
| O6 |
S1 |
N7 |
O5 |
230.7 |
133.0 |
| H7A |
N7 |
S1 |
H7B |
240.0 |
180.0 |
| H16 |
N16 |
S13 |
C11 |
50.6 |
242.3 |
| S13 |
N16 |
H16 |
C19 |
233.5 |
180.0 |
| H16 |
N16 |
C19 |
C20 |
80.1 |
345.0 |
| H16 |
N16 |
C19 |
H191 |
200.4 |
105.0 |
| H16 |
N16 |
C19 |
H192 |
319.8 |
225.0 |
| N16 |
C19 |
H191 |
C20 |
238.0 |
240.0 |
| H191 |
C19 |
N16 |
H16 |
200.4 |
105.0 |
| N16 |
C19 |
H191 |
H192 |
118.9 |
120.0 |
| H191 |
C19 |
C20 |
C21 |
299.3 |
58.7 |
| C20 |
C19 |
H191 |
H192 |
241.0 |
240.0 |
| N16 |
C19 |
H192 |
C20 |
122.0 |
119.9 |
| H192 |
C19 |
N16 |
H16 |
319.8 |
225.0 |
| N16 |
C19 |
H192 |
H191 |
241.0 |
240.0 |
| H192 |
C19 |
C20 |
C21 |
180.0 |
298.6 |
| C20 |
C19 |
H192 |
H191 |
119.0 |
120.0 |
| C21 |
C29 |
H291 |
H292 |
120.0 |
120.0 |
| C21 |
C29 |
H291 |
H293 |
240.0 |
240.0 |
| H292 |
C29 |
H291 |
H293 |
120.0 |
120.0 |
| C21 |
C29 |
H292 |
H291 |
240.0 |
240.0 |
| C21 |
C29 |
H292 |
H293 |
120.0 |
120.0 |
| H291 |
C29 |
H292 |
H293 |
240.0 |
240.0 |
| C21 |
C29 |
H293 |
H291 |
120.0 |
120.0 |
| C21 |
C29 |
H293 |
H292 |
240.0 |
240.0 |
| H291 |
C29 |
H293 |
H292 |
120.0 |
120.0 |
| C11 |
C12 |
H12 |
C7 |
180.0 |
180.1 |
| H12 |
C12 |
C7 |
C8 |
174.8 |
180.0 |
| H12 |
C12 |
C7 |
S1 |
1.0 |
0.1 |
| H9 |
C9 |
C10 |
C17 |
2.4 |
0.1 |
| C10 |
C9 |
H9 |
C8 |
180.0 |
180.0 |
| H9 |
C9 |
C8 |
C7 |
181.3 |
179.7 |
| H9 |
C9 |
C8 |
H8 |
1.3 |
360.0 |
| C9 |
C8 |
H8 |
C7 |
180.0 |
179.7 |
| H8 |
C8 |
C9 |
H9 |
1.3 |
360.0 |
| H8 |
C8 |
C7 |
S1 |
356.8 |
360.0 |
| H17 |
O17 |
C17 |
O18 |
0.0 |
360.0 |
| S1 |
N7 |
H7A |
H7B |
120.0 |
180.0 |
| S1 |
N7 |
H7B |
H7A |
240.0 |
180.0 |