PDB Chemical Component 514
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 514
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O1 |
C19 |
1.237 |
1.214 |
C2 |
N4 |
1.394 |
1.375 |
C2 |
N12 |
1.470 |
1.311 |
C2 |
C15 |
1.482 |
1.489 |
N3 |
N4 |
1.187 |
1.284 |
N3 |
C14 |
1.393 |
1.342 |
C5 |
C6 |
1.443 |
1.397 |
C5 |
C7 |
1.442 |
1.398 |
C5 |
C8 |
1.410 |
1.478 |
C6 |
C9 |
1.420 |
1.379 |
C6 |
H6 |
1.103 |
1.081 |
C7 |
C10 |
1.420 |
1.379 |
C7 |
H7 |
1.103 |
1.080 |
C8 |
O11 |
1.228 |
1.215 |
C8 |
N12 |
1.357 |
1.347 |
C9 |
C13 |
1.421 |
1.385 |
C9 |
H9 |
1.103 |
1.080 |
C10 |
C13 |
1.431 |
1.385 |
C10 |
H10 |
1.103 |
1.080 |
C13 |
H13 |
1.103 |
1.080 |
C14 |
C15 |
1.305 |
1.385 |
C14 |
C18 |
1.481 |
1.510 |
C15 |
C16 |
1.468 |
1.404 |
C16 |
N17 |
1.492 |
1.312 |
C16 |
H16 |
1.103 |
1.080 |
N17 |
C18 |
1.498 |
1.471 |
N17 |
C19 |
1.373 |
1.339 |
C18 |
H181 |
1.115 |
1.090 |
C18 |
H182 |
1.115 |
1.090 |
C19 |
C20 |
1.534 |
1.507 |
C20 |
H201 |
1.115 |
1.090 |
C20 |
H202 |
1.115 |
1.090 |
C20 |
H203 |
1.115 |
1.090 |
Bond Angles for 514
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C19 |
N17 |
121.8 |
120.0 |
O1 |
C19 |
C20 |
118.8 |
120.0 |
N4 |
C2 |
N12 |
124.5 |
127.5 |
N4 |
C2 |
C15 |
103.4 |
105.0 |
C2 |
N4 |
N3 |
112.2 |
109.9 |
N12 |
C2 |
C15 |
132.0 |
127.5 |
C2 |
N12 |
C8 |
125.9 |
120.0 |
C2 |
C15 |
C14 |
103.8 |
104.2 |
C2 |
C15 |
C16 |
139.9 |
146.2 |
N4 |
N3 |
C14 |
110.2 |
112.6 |
N3 |
C14 |
C15 |
110.3 |
108.3 |
N3 |
C14 |
C18 |
138.0 |
146.5 |
C6 |
C5 |
C7 |
118.6 |
119.7 |
C6 |
C5 |
C8 |
121.4 |
120.1 |
C5 |
C6 |
C9 |
120.6 |
119.8 |
C5 |
C6 |
H6 |
119.7 |
120.1 |
C7 |
C5 |
C8 |
120.0 |
120.1 |
C5 |
C7 |
C10 |
120.4 |
119.8 |
C5 |
C7 |
H7 |
119.8 |
120.1 |
C5 |
C8 |
O11 |
118.0 |
120.0 |
C5 |
C8 |
N12 |
119.3 |
120.0 |
C9 |
C6 |
H6 |
119.7 |
120.0 |
C6 |
C9 |
C13 |
120.1 |
120.1 |
C6 |
C9 |
H9 |
120.0 |
120.0 |
C10 |
C7 |
H7 |
119.8 |
120.1 |
C7 |
C10 |
C13 |
120.1 |
120.2 |
C7 |
C10 |
H10 |
119.9 |
120.0 |
O11 |
C8 |
N12 |
122.6 |
120.0 |
C13 |
C9 |
H9 |
119.9 |
119.9 |
C9 |
C13 |
C10 |
120.1 |
120.3 |
C9 |
C13 |
H13 |
120.0 |
119.8 |
C13 |
C10 |
H10 |
119.9 |
119.9 |
C10 |
C13 |
H13 |
119.9 |
119.8 |
C15 |
C14 |
C18 |
111.7 |
105.3 |
C14 |
C15 |
C16 |
116.2 |
109.6 |
C14 |
C18 |
N17 |
100.0 |
104.9 |
C14 |
C18 |
H181 |
115.9 |
110.3 |
C14 |
C18 |
H182 |
115.9 |
110.4 |
C15 |
C16 |
N17 |
98.4 |
112.1 |
C15 |
C16 |
H16 |
130.8 |
124.0 |
N17 |
C16 |
H16 |
130.8 |
124.0 |
C16 |
N17 |
C18 |
113.6 |
108.2 |
C16 |
N17 |
C19 |
122.5 |
125.9 |
C18 |
N17 |
C19 |
123.8 |
125.8 |
N17 |
C18 |
H181 |
115.8 |
110.7 |
N17 |
C18 |
H182 |
115.8 |
110.1 |
N17 |
C19 |
C20 |
119.4 |
120.0 |
H181 |
C18 |
H182 |
94.6 |
110.3 |
C19 |
C20 |
H201 |
118.7 |
109.5 |
C19 |
C20 |
H202 |
108.9 |
109.5 |
C19 |
C20 |
H203 |
108.9 |
109.4 |
H201 |
C20 |
H202 |
108.9 |
109.5 |
H201 |
C20 |
H203 |
108.9 |
109.5 |
H202 |
C20 |
H203 |
101.2 |
109.5 |
Torsion Angles for 514
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C16 |
N17 |
C19 |
O1 |
179.6 |
0.1 |
C18 |
N17 |
C19 |
O1 |
359.8 |
180.0 |
N17 |
C19 |
O1 |
C20 |
180.4 |
179.9 |
O1 |
C19 |
C20 |
H201 |
180.0 |
89.9 |
O1 |
C19 |
C20 |
H202 |
54.7 |
210.0 |
O1 |
C19 |
C20 |
H203 |
305.3 |
329.9 |
N12 |
C2 |
N4 |
C15 |
180.2 |
180.2 |
N4 |
C2 |
N12 |
C8 |
180.2 |
173.1 |
N4 |
C2 |
C15 |
C14 |
0.1 |
360.0 |
N4 |
C2 |
C15 |
C16 |
180.2 |
180.1 |
C2 |
N4 |
N3 |
C14 |
0.1 |
0.4 |
N4 |
C2 |
N12 |
C15 |
179.8 |
179.7 |
N12 |
C2 |
N4 |
N3 |
180.0 |
180.0 |
N12 |
C2 |
C15 |
C14 |
179.9 |
179.8 |
N12 |
C2 |
C15 |
C16 |
0.1 |
359.8 |
C5 |
C8 |
N12 |
C2 |
180.1 |
185.0 |
O11 |
C8 |
N12 |
C2 |
0.2 |
5.1 |
N4 |
C2 |
C15 |
N12 |
180.2 |
180.2 |
C15 |
C2 |
N4 |
N3 |
359.9 |
359.8 |
C15 |
C2 |
N12 |
C8 |
0.4 |
353.3 |
N3 |
C14 |
C15 |
C2 |
360.0 |
0.3 |
C2 |
C15 |
C14 |
C18 |
180.1 |
180.0 |
C14 |
C15 |
C2 |
C16 |
179.9 |
179.9 |
C2 |
C15 |
C16 |
N17 |
179.6 |
179.9 |
C2 |
C15 |
C16 |
H16 |
359.6 |
359.9 |
N3 |
N4 |
C2 |
N12 |
180.0 |
180.0 |
N3 |
N4 |
C2 |
C15 |
359.9 |
359.8 |
N4 |
N3 |
C14 |
C15 |
359.9 |
359.5 |
N4 |
N3 |
C14 |
C18 |
179.8 |
180.0 |
C2 |
C15 |
C14 |
N3 |
360.0 |
0.3 |
C15 |
C14 |
N3 |
C18 |
180.2 |
179.5 |
N3 |
C14 |
C15 |
C16 |
179.9 |
180.2 |
N3 |
C14 |
C18 |
N17 |
180.4 |
179.6 |
N3 |
C14 |
C18 |
H181 |
55.1 |
298.8 |
N3 |
C14 |
C18 |
H182 |
305.7 |
61.0 |
C7 |
C5 |
C6 |
C8 |
179.8 |
180.2 |
C6 |
C5 |
C7 |
C10 |
0.0 |
0.0 |
C6 |
C5 |
C7 |
H7 |
180.0 |
179.9 |
C6 |
C5 |
C8 |
O11 |
133.6 |
360.0 |
C6 |
C5 |
C8 |
N12 |
313.7 |
180.0 |
C9 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
C5 |
C6 |
C9 |
C13 |
0.0 |
0.0 |
C5 |
C6 |
C9 |
H9 |
180.0 |
180.0 |
C6 |
C5 |
C7 |
C8 |
180.2 |
179.8 |
C7 |
C5 |
C6 |
C9 |
360.0 |
360.0 |
C7 |
C5 |
C6 |
H6 |
180.0 |
179.9 |
C7 |
C5 |
C8 |
O11 |
313.9 |
179.7 |
C7 |
C5 |
C8 |
N12 |
134.0 |
359.8 |
C10 |
C7 |
C5 |
H7 |
180.0 |
180.1 |
C5 |
C7 |
C10 |
C13 |
360.0 |
359.9 |
C5 |
C7 |
C10 |
H10 |
180.0 |
180.0 |
C2 |
N12 |
C8 |
C5 |
180.1 |
185.0 |
C6 |
C5 |
C8 |
C7 |
179.8 |
180.2 |
C8 |
C5 |
C6 |
C9 |
180.2 |
179.7 |
C8 |
C5 |
C6 |
H6 |
0.2 |
359.7 |
C8 |
C5 |
C7 |
C10 |
179.8 |
180.3 |
C8 |
C5 |
C7 |
H7 |
359.8 |
0.2 |
O11 |
C8 |
C5 |
N12 |
179.9 |
179.9 |
C9 |
C6 |
C5 |
C7 |
360.0 |
360.0 |
C9 |
C6 |
C5 |
C8 |
180.2 |
179.7 |
C5 |
C6 |
C9 |
H6 |
180.0 |
179.9 |
C13 |
C9 |
C6 |
H9 |
180.0 |
180.0 |
C6 |
C9 |
C13 |
C10 |
360.0 |
360.0 |
C6 |
C9 |
C13 |
H13 |
180.0 |
180.0 |
H6 |
C6 |
C5 |
C7 |
180.0 |
179.9 |
H6 |
C6 |
C5 |
C8 |
0.2 |
359.7 |
C5 |
C6 |
H6 |
C9 |
180.0 |
180.1 |
H6 |
C6 |
C9 |
C13 |
180.0 |
180.1 |
H6 |
C6 |
C9 |
H9 |
0.0 |
0.1 |
C10 |
C7 |
C5 |
C8 |
179.8 |
180.3 |
C5 |
C7 |
C10 |
H7 |
180.0 |
179.9 |
C9 |
C13 |
C10 |
C7 |
0.0 |
0.1 |
C13 |
C10 |
C7 |
H10 |
180.0 |
180.0 |
C7 |
C10 |
C13 |
H13 |
180.0 |
180.0 |
H7 |
C7 |
C5 |
C8 |
359.8 |
0.2 |
C5 |
C7 |
H7 |
C10 |
180.0 |
180.1 |
H7 |
C7 |
C10 |
C13 |
180.0 |
180.0 |
H7 |
C7 |
C10 |
H10 |
360.0 |
0.1 |
C2 |
N12 |
C8 |
O11 |
0.2 |
5.1 |
C5 |
C8 |
O11 |
N12 |
180.1 |
180.1 |
C8 |
N12 |
C2 |
C15 |
0.4 |
353.3 |
C5 |
C8 |
N12 |
O11 |
179.9 |
179.9 |
C13 |
C9 |
C6 |
H6 |
180.0 |
180.1 |
C6 |
C9 |
C13 |
H9 |
180.0 |
180.0 |
C7 |
C10 |
C13 |
C9 |
0.0 |
0.1 |
C9 |
C13 |
C10 |
H10 |
180.0 |
180.0 |
C10 |
C13 |
C9 |
H13 |
180.0 |
180.0 |
H9 |
C9 |
C6 |
H6 |
0.0 |
0.1 |
C6 |
C9 |
H9 |
C13 |
180.0 |
180.0 |
H9 |
C9 |
C13 |
C10 |
180.0 |
180.0 |
H9 |
C9 |
C13 |
H13 |
360.0 |
0.0 |
C13 |
C10 |
C7 |
H7 |
180.0 |
180.0 |
C7 |
C10 |
C13 |
H10 |
180.0 |
180.0 |
C10 |
C13 |
C9 |
H9 |
180.0 |
180.0 |
C9 |
C13 |
C10 |
H13 |
180.0 |
180.0 |
H10 |
C10 |
C7 |
H7 |
360.0 |
0.1 |
C7 |
C10 |
H10 |
C13 |
180.0 |
180.0 |
H10 |
C10 |
C13 |
H13 |
0.0 |
360.0 |
H13 |
C13 |
C9 |
H9 |
360.0 |
0.0 |
C9 |
C13 |
H13 |
C10 |
180.0 |
180.0 |
H13 |
C13 |
C10 |
H10 |
0.0 |
360.0 |
C2 |
C15 |
C14 |
C16 |
180.1 |
180.1 |
N3 |
C14 |
C15 |
C18 |
179.9 |
180.3 |
C15 |
C14 |
C18 |
N17 |
0.2 |
0.0 |
C15 |
C14 |
C18 |
H181 |
234.9 |
119.3 |
C15 |
C14 |
C18 |
H182 |
125.5 |
241.5 |
C14 |
C15 |
C16 |
N17 |
359.8 |
0.0 |
C14 |
C15 |
C16 |
H16 |
179.8 |
180.0 |
N3 |
C14 |
C18 |
C15 |
180.2 |
179.5 |
C18 |
C14 |
C15 |
C16 |
360.0 |
359.9 |
C16 |
N17 |
C18 |
C14 |
359.6 |
360.0 |
C14 |
C18 |
N17 |
C19 |
179.4 |
180.0 |
N17 |
C18 |
C14 |
H181 |
125.3 |
240.8 |
N17 |
C18 |
C14 |
H182 |
234.7 |
118.6 |
H181 |
C18 |
C14 |
H182 |
109.5 |
237.8 |
C2 |
C15 |
C16 |
C14 |
179.9 |
179.9 |
C16 |
C15 |
C14 |
C18 |
360.0 |
359.9 |
N17 |
C16 |
C15 |
H16 |
180.0 |
180.0 |
C15 |
C16 |
N17 |
C18 |
0.4 |
360.0 |
C15 |
C16 |
N17 |
C19 |
180.6 |
179.9 |
O1 |
C19 |
N17 |
C16 |
179.6 |
0.1 |
C14 |
C18 |
N17 |
C16 |
359.6 |
360.0 |
C15 |
C16 |
N17 |
H16 |
180.0 |
180.0 |
C18 |
N17 |
C16 |
C19 |
179.8 |
180.1 |
C16 |
N17 |
C18 |
H181 |
124.9 |
241.0 |
C16 |
N17 |
C18 |
H182 |
234.3 |
118.7 |
C16 |
N17 |
C19 |
C20 |
360.0 |
180.0 |
C15 |
C16 |
H16 |
N17 |
180.0 |
180.0 |
H16 |
C16 |
N17 |
C18 |
180.4 |
180.0 |
H16 |
C16 |
N17 |
C19 |
0.6 |
360.0 |
O1 |
C19 |
N17 |
C18 |
359.8 |
180.0 |
C14 |
C18 |
N17 |
H181 |
234.7 |
119.0 |
C14 |
C18 |
N17 |
H182 |
125.3 |
241.2 |
C18 |
N17 |
C16 |
H16 |
180.4 |
180.0 |
C16 |
N17 |
C18 |
C19 |
180.2 |
179.9 |
C18 |
N17 |
C19 |
C20 |
180.2 |
359.9 |
H181 |
C18 |
N17 |
H182 |
250.6 |
122.3 |
O1 |
C19 |
N17 |
C20 |
179.6 |
180.1 |
C19 |
N17 |
C16 |
H16 |
0.6 |
360.0 |
C16 |
N17 |
C19 |
C18 |
179.8 |
180.1 |
C19 |
N17 |
C18 |
H181 |
304.7 |
61.1 |
C19 |
N17 |
C18 |
H182 |
54.1 |
298.8 |
N17 |
C19 |
C20 |
H201 |
359.6 |
270.0 |
N17 |
C19 |
C20 |
H202 |
234.4 |
30.1 |
N17 |
C19 |
C20 |
H203 |
124.9 |
150.0 |
C14 |
C18 |
H181 |
N17 |
116.7 |
244.4 |
C14 |
C18 |
H181 |
H182 |
238.3 |
122.3 |
H181 |
C18 |
N17 |
C19 |
304.7 |
61.1 |
N17 |
C18 |
H181 |
H182 |
121.6 |
237.9 |
C14 |
C18 |
H182 |
N17 |
243.3 |
115.3 |
C14 |
C18 |
H182 |
H181 |
121.7 |
237.8 |
H182 |
C18 |
N17 |
C19 |
54.1 |
298.8 |
N17 |
C18 |
H182 |
H181 |
238.4 |
122.5 |
O1 |
C19 |
C20 |
N17 |
180.4 |
179.9 |
H201 |
C20 |
C19 |
H202 |
125.2 |
240.0 |
H201 |
C20 |
C19 |
H203 |
234.7 |
120.0 |
H202 |
C20 |
C19 |
H203 |
109.5 |
240.0 |
C19 |
C20 |
H201 |
H202 |
234.7 |
120.1 |
C19 |
C20 |
H201 |
H203 |
125.3 |
240.0 |
H202 |
C20 |
H201 |
H203 |
250.5 |
120.0 |
C19 |
C20 |
H202 |
H201 |
130.8 |
239.9 |
C19 |
C20 |
H202 |
H203 |
245.4 |
120.0 |
H201 |
C20 |
H202 |
H203 |
114.6 |
240.0 |
C19 |
C20 |
H203 |
H201 |
229.2 |
120.0 |
C19 |
C20 |
H203 |
H202 |
114.6 |
240.0 |
H201 |
C20 |
H203 |
H202 |
245.4 |
120.0 |