PDB Chemical Component 50Z
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 50Z
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.348 |
1.312 |
| N1 |
C14 |
1.350 |
1.303 |
| C2 |
N3 |
1.352 |
1.384 |
| C2 |
C4 |
1.408 |
1.385 |
| C4 |
C5 |
1.380 |
1.405 |
| C4 |
S13 |
1.721 |
1.761 |
| C5 |
C6 |
1.506 |
1.483 |
| C5 |
O12 |
1.361 |
1.219 |
| C6 |
N8 |
1.426 |
1.327 |
| C6 |
C11 |
1.428 |
1.393 |
| C8 |
N8 |
1.424 |
1.316 |
| C8 |
C9 |
1.379 |
1.384 |
| C9 |
C10 |
1.378 |
1.387 |
| C10 |
C11 |
1.425 |
1.385 |
| S13 |
C14 |
1.716 |
1.708 |
| C14 |
N15 |
1.377 |
1.375 |
| N15 |
C16 |
1.458 |
1.465 |
| C16 |
C17 |
1.514 |
1.507 |
| C17 |
C18 |
1.476 |
1.310 |
| N3 |
HN3 |
1.000 |
0.969 |
| N3 |
HN3A |
1.000 |
0.970 |
| C8 |
H8 |
1.080 |
1.080 |
| C9 |
H9 |
1.080 |
1.080 |
| C10 |
H10 |
1.080 |
1.081 |
| C11 |
H11 |
1.080 |
1.080 |
| N15 |
HN15 |
1.000 |
0.970 |
| C16 |
H16 |
1.100 |
1.090 |
| C16 |
H16A |
1.100 |
1.090 |
| C17 |
H17 |
1.080 |
1.080 |
| C18 |
H18 |
1.080 |
1.080 |
| C18 |
H18A |
1.080 |
1.080 |
Bond Angles for 50Z
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
111.3 |
117.3 |
| N1 |
C2 |
N3 |
120.2 |
123.2 |
| N1 |
C2 |
C4 |
114.1 |
113.6 |
| N1 |
C14 |
S13 |
114.8 |
110.8 |
| N1 |
C14 |
N15 |
121.1 |
124.6 |
| N3 |
C2 |
C4 |
125.7 |
123.3 |
| C2 |
N3 |
HN3 |
109.5 |
120.0 |
| C2 |
N3 |
HN3A |
109.4 |
120.0 |
| C2 |
C4 |
C5 |
127.5 |
126.1 |
| C2 |
C4 |
S13 |
110.5 |
107.7 |
| C5 |
C4 |
S13 |
122.0 |
126.2 |
| C4 |
C5 |
C6 |
122.5 |
120.0 |
| C4 |
C5 |
O12 |
120.4 |
120.0 |
| C4 |
S13 |
C14 |
89.3 |
90.6 |
| C6 |
C5 |
O12 |
117.0 |
120.0 |
| C5 |
C6 |
N8 |
121.6 |
119.7 |
| C5 |
C6 |
C11 |
120.6 |
119.7 |
| N8 |
C6 |
C11 |
117.8 |
120.6 |
| C6 |
N8 |
C8 |
120.9 |
121.6 |
| C6 |
C11 |
C10 |
119.5 |
119.1 |
| C6 |
C11 |
H11 |
120.3 |
120.5 |
| N8 |
C8 |
C9 |
119.6 |
120.9 |
| N8 |
C8 |
H8 |
120.1 |
119.5 |
| C8 |
C9 |
C10 |
121.1 |
119.4 |
| C9 |
C8 |
H8 |
120.2 |
119.6 |
| C8 |
C9 |
H9 |
119.5 |
120.3 |
| C9 |
C10 |
C11 |
120.9 |
118.5 |
| C10 |
C9 |
H9 |
119.4 |
120.3 |
| C9 |
C10 |
H10 |
119.5 |
120.8 |
| C11 |
C10 |
H10 |
119.5 |
120.8 |
| C10 |
C11 |
H11 |
120.2 |
120.4 |
| S13 |
C14 |
N15 |
124.2 |
124.6 |
| C14 |
N15 |
C16 |
121.9 |
120.0 |
| C14 |
N15 |
HN15 |
105.5 |
120.0 |
| N15 |
C16 |
C17 |
111.6 |
109.5 |
| C16 |
N15 |
HN15 |
105.5 |
120.0 |
| N15 |
C16 |
H16 |
108.7 |
109.5 |
| N15 |
C16 |
H16A |
108.8 |
109.5 |
| C16 |
C17 |
C18 |
121.1 |
120.0 |
| C17 |
C16 |
H16 |
108.8 |
109.5 |
| C17 |
C16 |
H16A |
108.7 |
109.5 |
| C16 |
C17 |
H17 |
119.5 |
120.0 |
| C18 |
C17 |
H17 |
119.4 |
120.0 |
| C17 |
C18 |
H18 |
120.0 |
120.0 |
| C17 |
C18 |
H18A |
120.0 |
120.0 |
| HN3 |
N3 |
HN3A |
109.5 |
120.0 |
| H16 |
C16 |
H16A |
110.2 |
109.5 |
| H18 |
C18 |
H18A |
120.0 |
120.0 |
Torsion Angles for 50Z
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C14 |
S13 |
0.2 |
0.0 |
| C2 |
N1 |
C14 |
N15 |
180.4 |
180.0 |
| N3 |
C2 |
N1 |
C4 |
179.5 |
180.0 |
| N1 |
C2 |
N3 |
HN3 |
360.0 |
0.0 |
| N1 |
C2 |
N3 |
HN3A |
120.0 |
179.9 |
| N1 |
C2 |
C4 |
C5 |
178.9 |
180.0 |
| N1 |
C2 |
C4 |
S13 |
359.6 |
360.0 |
| C14 |
N1 |
C2 |
N3 |
179.7 |
180.0 |
| C14 |
N1 |
C2 |
C4 |
0.2 |
360.0 |
| C4 |
S13 |
C14 |
N1 |
359.7 |
360.0 |
| S13 |
C14 |
N1 |
N15 |
179.8 |
180.0 |
| N1 |
C14 |
N15 |
C16 |
179.1 |
360.0 |
| N1 |
C14 |
N15 |
HN15 |
299.1 |
180.1 |
| N3 |
C2 |
N1 |
C14 |
179.7 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
180.5 |
180.0 |
| N3 |
C2 |
C4 |
C5 |
359.4 |
360.0 |
| N3 |
C2 |
C4 |
S13 |
180.1 |
180.0 |
| HN3 |
N3 |
C2 |
HN3A |
240.0 |
180.1 |
| C4 |
C2 |
N1 |
C14 |
0.2 |
360.0 |
| N1 |
C2 |
C4 |
N3 |
179.5 |
180.0 |
| C4 |
C2 |
N3 |
HN3 |
179.4 |
180.0 |
| C4 |
C2 |
N3 |
HN3A |
299.5 |
359.9 |
| C5 |
C4 |
C2 |
S13 |
179.3 |
180.0 |
| C2 |
C4 |
C5 |
C6 |
181.0 |
180.0 |
| C2 |
C4 |
C5 |
O12 |
359.6 |
0.0 |
| C2 |
C4 |
S13 |
C14 |
0.4 |
0.0 |
| C2 |
C4 |
C5 |
S13 |
180.7 |
180.0 |
| C5 |
C4 |
S13 |
C14 |
181.0 |
180.0 |
| C6 |
C5 |
C4 |
O12 |
181.4 |
180.0 |
| C4 |
C5 |
C6 |
N8 |
337.6 |
0.0 |
| C4 |
C5 |
C6 |
C11 |
157.1 |
179.8 |
| N1 |
C14 |
S13 |
C4 |
359.7 |
360.0 |
| C2 |
C4 |
S13 |
C5 |
179.4 |
180.0 |
| S13 |
C4 |
C5 |
C6 |
0.3 |
360.0 |
| S13 |
C4 |
C5 |
O12 |
178.9 |
180.0 |
| C4 |
S13 |
C14 |
N15 |
179.5 |
180.0 |
| C6 |
C5 |
C4 |
S13 |
0.3 |
360.0 |
| C4 |
C5 |
C6 |
O12 |
178.7 |
180.0 |
| N8 |
C6 |
C5 |
C11 |
180.5 |
180.2 |
| C5 |
C6 |
N8 |
C8 |
179.6 |
180.0 |
| C5 |
C6 |
C11 |
C10 |
180.4 |
180.0 |
| C5 |
C6 |
C11 |
H11 |
0.4 |
359.9 |
| O12 |
C5 |
C4 |
S13 |
178.9 |
180.0 |
| C4 |
C5 |
O12 |
C6 |
181.3 |
180.0 |
| O12 |
C5 |
C6 |
N8 |
158.9 |
180.0 |
| O12 |
C5 |
C6 |
C11 |
338.4 |
359.8 |
| N8 |
C6 |
C5 |
O12 |
158.9 |
180.0 |
| C5 |
C6 |
N8 |
C11 |
179.6 |
179.8 |
| N8 |
C6 |
C11 |
C10 |
359.9 |
359.8 |
| N8 |
C6 |
C11 |
H11 |
179.9 |
179.7 |
| C6 |
N8 |
C8 |
C9 |
0.0 |
0.0 |
| C6 |
N8 |
C8 |
H8 |
180.0 |
180.0 |
| C11 |
C6 |
C5 |
O12 |
338.4 |
359.8 |
| C5 |
C6 |
C11 |
N8 |
180.4 |
180.2 |
| C11 |
C6 |
N8 |
C8 |
0.0 |
0.2 |
| C9 |
C10 |
C11 |
C6 |
0.1 |
359.9 |
| C6 |
C11 |
C10 |
H10 |
180.0 |
180.2 |
| C10 |
C11 |
C6 |
H11 |
180.0 |
180.1 |
| C8 |
N8 |
C6 |
C11 |
0.0 |
0.2 |
| N8 |
C8 |
C9 |
C10 |
360.0 |
359.7 |
| C9 |
C8 |
N8 |
H8 |
180.0 |
180.1 |
| N8 |
C8 |
C9 |
H9 |
180.0 |
180.0 |
| N8 |
C8 |
C9 |
H8 |
180.0 |
179.9 |
| C8 |
C9 |
C10 |
C11 |
360.0 |
0.3 |
| C10 |
C9 |
C8 |
H9 |
180.0 |
179.7 |
| C8 |
C9 |
C10 |
H10 |
180.0 |
180.0 |
| C6 |
C11 |
C10 |
C9 |
0.1 |
359.9 |
| C10 |
C9 |
C8 |
H8 |
180.0 |
179.8 |
| C8 |
C9 |
C10 |
H9 |
180.0 |
180.3 |
| C11 |
C10 |
C9 |
H10 |
180.0 |
180.3 |
| C9 |
C10 |
C11 |
H11 |
180.1 |
180.0 |
| C6 |
C11 |
C10 |
H11 |
180.0 |
179.9 |
| C11 |
C10 |
C9 |
H9 |
180.0 |
180.0 |
| C9 |
C10 |
C11 |
H10 |
180.0 |
179.7 |
| N1 |
C14 |
S13 |
N15 |
180.2 |
180.0 |
| S13 |
C14 |
N15 |
C16 |
359.3 |
180.0 |
| S13 |
C14 |
N15 |
HN15 |
119.3 |
0.1 |
| N1 |
C14 |
N15 |
S13 |
179.8 |
180.0 |
| C14 |
N15 |
C16 |
C17 |
281.8 |
180.0 |
| C16 |
N15 |
C14 |
HN15 |
240.0 |
179.9 |
| C14 |
N15 |
C16 |
H16 |
41.8 |
300.0 |
| C14 |
N15 |
C16 |
H16A |
161.8 |
60.0 |
| C14 |
N15 |
C16 |
HN15 |
120.0 |
180.1 |
| N15 |
C16 |
C17 |
C18 |
121.5 |
125.0 |
| C17 |
C16 |
N15 |
H16 |
240.0 |
240.0 |
| C17 |
C16 |
N15 |
H16A |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
H17 |
301.5 |
305.0 |
| H16 |
C16 |
N15 |
H16A |
240.0 |
240.0 |
| C17 |
C16 |
N15 |
HN15 |
161.8 |
360.0 |
| N15 |
C16 |
C17 |
H16 |
120.0 |
120.0 |
| N15 |
C16 |
C17 |
H16A |
240.0 |
240.0 |
| C18 |
C17 |
C16 |
H17 |
180.0 |
179.9 |
| C16 |
C17 |
C18 |
H18 |
180.0 |
180.0 |
| C16 |
C17 |
C18 |
H18A |
0.0 |
0.1 |
| H16 |
C16 |
C17 |
H16A |
120.0 |
120.0 |
| C18 |
C17 |
C16 |
H16 |
1.6 |
5.0 |
| C18 |
C17 |
C16 |
H16A |
241.5 |
245.0 |
| C16 |
C17 |
C18 |
H17 |
180.0 |
180.1 |
| H18 |
C18 |
C17 |
H18A |
180.0 |
179.9 |
| HN3 |
N3 |
C2 |
C4 |
179.4 |
180.0 |
| C2 |
N3 |
HN3 |
HN3A |
120.0 |
179.9 |
| HN3A |
N3 |
C2 |
C4 |
299.5 |
359.9 |
| C2 |
N3 |
HN3A |
HN3 |
240.0 |
180.1 |
| N8 |
C8 |
H8 |
C9 |
180.0 |
180.1 |
| H8 |
C8 |
C9 |
C10 |
180.0 |
179.8 |
| H8 |
C8 |
C9 |
H9 |
360.0 |
0.1 |
| C8 |
C9 |
H9 |
C10 |
180.0 |
179.7 |
| H9 |
C9 |
C8 |
H8 |
360.0 |
0.1 |
| H9 |
C9 |
C10 |
C11 |
180.0 |
180.0 |
| H9 |
C9 |
C10 |
H10 |
0.0 |
359.7 |
| C9 |
C10 |
H10 |
C11 |
180.0 |
180.3 |
| H10 |
C10 |
C9 |
H9 |
0.0 |
359.7 |
| H10 |
C10 |
C11 |
H11 |
0.0 |
0.3 |
| C6 |
C11 |
H11 |
C10 |
180.0 |
180.1 |
| H11 |
C11 |
C10 |
H10 |
0.0 |
0.3 |
| C14 |
N15 |
HN15 |
C16 |
229.7 |
179.9 |
| HN15 |
N15 |
C16 |
C17 |
161.8 |
360.0 |
| HN15 |
N15 |
C16 |
H16 |
281.7 |
119.9 |
| HN15 |
N15 |
C16 |
H16A |
41.8 |
239.9 |
| N15 |
C16 |
H16 |
C17 |
238.3 |
240.0 |
| H16 |
C16 |
N15 |
HN15 |
281.7 |
119.9 |
| N15 |
C16 |
H16 |
H16A |
119.1 |
120.0 |
| H16 |
C16 |
C17 |
C18 |
1.6 |
5.0 |
| C17 |
C16 |
H16 |
H16A |
240.9 |
240.0 |
| H16 |
C16 |
C17 |
H17 |
181.6 |
185.0 |
| N15 |
C16 |
H16A |
C17 |
121.8 |
120.0 |
| H16A |
C16 |
N15 |
HN15 |
41.8 |
239.9 |
| N15 |
C16 |
H16A |
H16 |
240.9 |
240.0 |
| H16A |
C16 |
C17 |
C18 |
241.5 |
245.0 |
| C17 |
C16 |
H16A |
H16 |
119.1 |
120.0 |
| H16A |
C16 |
C17 |
H17 |
61.6 |
65.1 |
| C16 |
C17 |
H17 |
C18 |
180.0 |
179.9 |
| H17 |
C17 |
C16 |
H16 |
181.6 |
185.0 |
| H17 |
C17 |
C16 |
H16A |
61.6 |
65.1 |
| H17 |
C17 |
C18 |
H18 |
360.0 |
359.9 |
| H17 |
C17 |
C18 |
H18A |
180.0 |
180.0 |
| H18 |
C18 |
C17 |
H17 |
360.0 |
359.9 |
| C17 |
C18 |
H18 |
H18A |
180.0 |
180.1 |
| H18A |
C18 |
C17 |
H17 |
180.0 |
180.0 |
| C17 |
C18 |
H18A |
H18 |
180.0 |
179.9 |