Atom Nomenclature for 50Q

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 50Q

Atom Name (V3) Atom Name (V2)
C10 C10
C13 C13
C15 C15
O05 O05
C04 C04
C03 C03
C02 C02
O01 O01
C19 C19
C09 C09
C11 C11
C16 C16
CL6 CL6
O17 O17
CL5 CL5
C18 C18
C06 C06
H10 H10
H09 H09
H15 H15
H01 H01
H03 H03
H19 H19
H05 H05
H06 H06