PDB Chemical Component 50L
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 50L
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
O7 |
P1 |
1.484 |
|
P1 |
O6 |
1.486 |
|
P1 |
O2 |
1.595 |
|
C10 |
C1 |
1.331 |
|
C10 |
N5 |
1.339 |
|
C1 |
N1 |
1.334 |
|
O1 |
C2 |
1.231 |
|
O2 |
C5 |
1.420 |
|
C5 |
C6 |
1.506 |
|
O3 |
C6 |
1.445 |
|
O3 |
C9 |
1.416 |
|
N5 |
C2 |
1.337 |
|
N5 |
C4 |
1.334 |
|
C2 |
N2 |
1.335 |
|
N1 |
C4 |
1.327 |
|
N1 |
C9 |
1.465 |
|
C6 |
C7 |
1.508 |
|
C4 |
N4 |
1.342 |
|
C9 |
C8 |
1.523 |
|
N2 |
C3 |
1.337 |
|
N4 |
C3 |
1.356 |
|
C3 |
N3 |
1.335 |
|
C7 |
C8 |
1.520 |
|
C7 |
O4 |
1.406 |
|
C8 |
O5 |
1.421 |
|
C1 |
H1 |
1.080 |
|
N3 |
H2 |
1.000 |
|
N3 |
H3 |
1.000 |
|
N4 |
H4 |
1.000 |
|
C5 |
H5 |
1.100 |
|
C5 |
H6 |
1.100 |
|
C6 |
H7 |
1.099 |
|
C7 |
H8 |
1.100 |
|
O4 |
H9 |
0.950 |
|
C8 |
H10 |
1.101 |
|
O5 |
H11 |
0.950 |
|
C9 |
H12 |
1.100 |
|
C10 |
H13 |
1.080 |
|
O7 |
H15 |
0.950 |
|
P1 |
O8 |
1.609 |
|
O8 |
H17 |
0.950 |
|
Bond Angles for 50L
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O7 |
P1 |
O8 |
107.3 |
|
O2 |
P1 |
O6 |
108.9 |
|
O6 |
P1 |
O8 |
108.3 |
|
P1 |
O2 |
C5 |
120.9 |
|
O2 |
P1 |
O8 |
103.5 |
|
C10 |
C1 |
H1 |
126.3 |
|
C1 |
N1 |
C4 |
109.1 |
|
C1 |
N1 |
C9 |
120.4 |
|
O1 |
C2 |
N2 |
119.4 |
|
O2 |
C5 |
C6 |
111.1 |
|
O2 |
C5 |
H5 |
109.0 |
|
O2 |
C5 |
H6 |
109.0 |
|
C5 |
C6 |
C7 |
115.1 |
|
C6 |
C5 |
H5 |
109.1 |
|
C6 |
C5 |
H6 |
109.1 |
|
C5 |
C6 |
H7 |
108.9 |
|
O3 |
C6 |
C7 |
103.2 |
|
O3 |
C6 |
H7 |
109.7 |
|
N1 |
C9 |
O3 |
107.6 |
|
O3 |
C9 |
C8 |
107.5 |
|
O3 |
C9 |
H12 |
109.4 |
|
C2 |
N2 |
C3 |
120.4 |
|
C4 |
N1 |
C9 |
130.2 |
|
N1 |
C4 |
N4 |
134.2 |
|
N1 |
C9 |
C8 |
115.5 |
|
N1 |
C9 |
H12 |
108.7 |
|
C6 |
C7 |
C8 |
102.0 |
|
C6 |
C7 |
O4 |
111.2 |
|
C7 |
C6 |
H7 |
108.9 |
|
C6 |
C7 |
H8 |
109.4 |
|
C4 |
N4 |
H4 |
120.4 |
|
C9 |
C8 |
H10 |
112.3 |
|
N2 |
C3 |
N3 |
117.1 |
|
C3 |
N3 |
H2 |
120.0 |
|
C3 |
N3 |
H3 |
120.0 |
|
O4 |
C7 |
C8 |
113.9 |
|
C7 |
C8 |
O5 |
109.8 |
|
C8 |
C7 |
H8 |
109.2 |
|
C7 |
C8 |
H10 |
112.4 |
|
O4 |
C7 |
H8 |
110.8 |
|
C7 |
O4 |
H9 |
109.5 |
|
O5 |
C8 |
H10 |
114.0 |
|
C8 |
O5 |
H11 |
109.5 |
|
H2 |
N3 |
H3 |
120.0 |
|
H5 |
C5 |
H6 |
109.5 |
|
P1 |
O8 |
H17 |
109.5 |
|
Torsion Angles for 50L
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O6 |
P1 |
O7 |
O8 |
236.8 |
|
O2 |
P1 |
O7 |
O8 |
111.4 |
|
O7 |
P1 |
O8 |
H17 |
230.5 |
|
O7 |
P1 |
O6 |
O8 |
122.7 |
|
O6 |
P1 |
O2 |
C5 |
64.6 |
|
O2 |
P1 |
O6 |
O8 |
248.1 |
|
O6 |
P1 |
O8 |
H17 |
0.0 |
|
O7 |
P1 |
O2 |
O8 |
246.1 |
|
O6 |
P1 |
O2 |
O8 |
115.0 |
|
P1 |
O2 |
C5 |
C6 |
169.8 |
|
P1 |
O2 |
C5 |
H5 |
290.1 |
|
P1 |
O2 |
C5 |
H6 |
49.5 |
|
O2 |
P1 |
O8 |
H17 |
115.5 |
|
N5 |
C10 |
C1 |
H1 |
181.3 |
|
C1 |
N1 |
C9 |
O3 |
11.1 |
|
C4 |
N1 |
C1 |
C9 |
175.0 |
|
C1 |
N1 |
C4 |
N4 |
180.1 |
|
C1 |
N1 |
C9 |
C8 |
251.1 |
|
C1 |
N1 |
C9 |
H12 |
129.5 |
|
O1 |
C2 |
N2 |
C3 |
180.1 |
|
C5 |
O2 |
P1 |
O6 |
64.6 |
|
C5 |
O2 |
P1 |
O8 |
309.6 |
|
O2 |
C5 |
C6 |
C7 |
45.6 |
|
C6 |
C5 |
O2 |
H5 |
239.7 |
|
C6 |
C5 |
O2 |
H6 |
120.3 |
|
O2 |
C5 |
C6 |
H7 |
168.1 |
|
H5 |
C5 |
O2 |
H6 |
240.5 |
|
O2 |
C5 |
C6 |
H5 |
120.3 |
|
O2 |
C5 |
C6 |
H6 |
239.8 |
|
O3 |
C6 |
C5 |
C7 |
243.4 |
|
O3 |
C6 |
C5 |
H7 |
120.8 |
|
C5 |
C6 |
C7 |
C8 |
199.3 |
|
C5 |
C6 |
C7 |
O4 |
77.5 |
|
C7 |
C6 |
C5 |
H7 |
237.5 |
|
C5 |
C6 |
C7 |
H8 |
314.8 |
|
H5 |
C5 |
C6 |
H6 |
119.5 |
|
C5 |
C6 |
O3 |
C7 |
123.7 |
|
O3 |
C6 |
C5 |
H5 |
168.7 |
|
O3 |
C6 |
C5 |
H6 |
49.2 |
|
C5 |
C6 |
O3 |
H7 |
239.7 |
|
N1 |
C9 |
O3 |
C6 |
236.4 |
|
O3 |
C6 |
C7 |
C8 |
320.3 |
|
O3 |
C6 |
C7 |
O4 |
198.5 |
|
C7 |
C6 |
O3 |
H7 |
115.9 |
|
O3 |
C6 |
C7 |
H8 |
75.8 |
|
C9 |
O3 |
C6 |
C7 |
24.1 |
|
C9 |
O3 |
C6 |
H7 |
268.2 |
|
C4 |
N1 |
C9 |
O3 |
197.3 |
|
N1 |
C9 |
O3 |
C8 |
235.0 |
|
N1 |
C9 |
O3 |
H12 |
118.0 |
|
O3 |
C9 |
C8 |
H10 |
214.6 |
|
N5 |
C4 |
N4 |
H4 |
179.4 |
|
C2 |
N2 |
C3 |
N3 |
180.1 |
|
C1 |
N1 |
C4 |
C9 |
185.6 |
|
C4 |
N1 |
C9 |
C8 |
77.2 |
|
C4 |
N1 |
C9 |
H12 |
315.7 |
|
N1 |
C4 |
N4 |
H4 |
1.0 |
|
C1 |
N1 |
C9 |
C4 |
173.9 |
|
O3 |
C9 |
N1 |
C8 |
120.0 |
|
O3 |
C9 |
N1 |
H12 |
241.6 |
|
C9 |
N1 |
C4 |
N4 |
354.5 |
|
N1 |
C9 |
C8 |
H10 |
334.8 |
|
C7 |
C6 |
C5 |
H5 |
285.3 |
|
C7 |
C6 |
C5 |
H6 |
165.8 |
|
C5 |
C6 |
C7 |
H7 |
122.6 |
|
O3 |
C6 |
C7 |
H7 |
243.5 |
|
O4 |
C7 |
C6 |
C8 |
238.2 |
|
C6 |
C7 |
C8 |
O5 |
286.9 |
|
C8 |
C7 |
C6 |
H8 |
244.5 |
|
C6 |
C7 |
C8 |
H10 |
158.9 |
|
O4 |
C7 |
C6 |
H8 |
122.7 |
|
C6 |
C7 |
O4 |
H9 |
180.0 |
|
N4 |
C4 |
N1 |
C9 |
354.5 |
|
N1 |
C9 |
C8 |
O3 |
120.1 |
|
O3 |
C9 |
C8 |
H12 |
117.9 |
|
N1 |
C9 |
C8 |
H12 |
238.1 |
|
C9 |
C8 |
C7 |
H8 |
283.7 |
|
C7 |
C8 |
C9 |
H10 |
119.6 |
|
O5 |
C8 |
C9 |
H10 |
234.1 |
|
C9 |
C8 |
O5 |
H11 |
180.0 |
|
N2 |
C3 |
N3 |
H2 |
0.0 |
|
N2 |
C3 |
N3 |
H3 |
180.0 |
|
N1 |
C4 |
N4 |
C3 |
181.0 |
|
N4 |
C3 |
N3 |
H2 |
180.2 |
|
N4 |
C3 |
N3 |
H3 |
0.1 |
|
H2 |
N3 |
C3 |
H3 |
180.0 |
|
O3 |
C9 |
C8 |
C7 |
334.2 |
|
N1 |
C9 |
C8 |
C7 |
94.3 |
|
C6 |
C7 |
C8 |
O4 |
240.1 |
|
C8 |
C7 |
C6 |
H7 |
76.8 |
|
C6 |
C7 |
C8 |
H8 |
115.6 |
|
C9 |
C8 |
C7 |
H10 |
240.5 |
|
O4 |
C7 |
C8 |
H8 |
235.6 |
|
C8 |
C7 |
O4 |
H9 |
65.4 |
|
O5 |
C8 |
C7 |
H10 |
128.0 |
|
C7 |
C8 |
O5 |
H11 |
288.1 |
|
C6 |
C7 |
O4 |
C8 |
114.6 |
|
O4 |
C7 |
C6 |
H7 |
315.0 |
|
C6 |
C7 |
O4 |
H8 |
238.1 |
|
O4 |
C7 |
C8 |
O5 |
46.9 |
|
C8 |
C7 |
O4 |
H8 |
123.5 |
|
O4 |
C7 |
C8 |
H10 |
278.8 |
|
O3 |
C9 |
C8 |
O5 |
88.8 |
|
N1 |
C9 |
C8 |
O5 |
208.9 |
|
C9 |
C8 |
O5 |
H10 |
124.8 |
|
O5 |
C8 |
C7 |
H8 |
171.3 |
|
C7 |
C8 |
O5 |
H10 |
232.9 |
|
H1 |
C1 |
N1 |
C4 |
178.2 |
|
H1 |
C1 |
N1 |
C9 |
3.1 |
|
C3 |
N3 |
H2 |
H3 |
180.0 |
|
C3 |
N3 |
H3 |
H2 |
180.0 |
|
O2 |
C5 |
H5 |
C6 |
238.5 |
|
O2 |
C5 |
H5 |
H6 |
119.2 |
|
H5 |
C5 |
C6 |
C7 |
285.3 |
|
C6 |
C5 |
H5 |
H6 |
240.8 |
|
H5 |
C5 |
C6 |
H7 |
47.8 |
|
O2 |
C5 |
H6 |
C6 |
121.5 |
|
O2 |
C5 |
H6 |
H5 |
240.8 |
|
H6 |
C5 |
C6 |
C7 |
165.8 |
|
C6 |
C5 |
H6 |
H5 |
119.3 |
|
H6 |
C5 |
C6 |
H7 |
288.3 |
|
C5 |
C6 |
H7 |
C7 |
233.8 |
|
H7 |
C6 |
C5 |
H5 |
47.8 |
|
H7 |
C6 |
C5 |
H6 |
288.3 |
|
O3 |
C6 |
H7 |
C7 |
112.3 |
|
H7 |
C6 |
C7 |
C8 |
76.8 |
|
H7 |
C6 |
C7 |
O4 |
315.0 |
|
H7 |
C6 |
C7 |
H8 |
192.3 |
|
C6 |
C7 |
H8 |
C8 |
249.2 |
|
C6 |
C7 |
H8 |
O4 |
122.9 |
|
H8 |
C7 |
C6 |
H7 |
192.3 |
|
O4 |
C7 |
H8 |
C8 |
126.2 |
|
H8 |
C7 |
C8 |
O5 |
171.3 |
|
H8 |
C7 |
C8 |
H10 |
43.2 |
|
H8 |
C7 |
O4 |
H9 |
301.9 |
|
H9 |
O4 |
C7 |
C8 |
65.4 |
|
H9 |
O4 |
C7 |
H8 |
301.9 |
|
C7 |
C8 |
H10 |
O5 |
125.8 |
|
H10 |
C8 |
C7 |
H8 |
43.2 |
|
H10 |
C8 |
O5 |
H11 |
55.2 |
|
H11 |
O5 |
C8 |
H10 |
55.2 |
|
N1 |
C9 |
H12 |
O3 |
242.7 |
|
O3 |
C9 |
H12 |
C8 |
243.3 |
|
N1 |
C9 |
H12 |
C8 |
126.0 |
|
H12 |
C9 |
C8 |
H10 |
96.7 |
|
H13 |
C10 |
C1 |
H1 |
1.3 |
|
H15 |
O7 |
P1 |
O8 |
123.2 |
|
O2 |
P1 |
O8 |
O6 |
115.5 |
|
O8 |
P1 |
O2 |
C5 |
309.6 |
|