PDB Chemical Component 50D
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 50D
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C30 |
C29 |
1.567 |
1.540 |
C30 |
O31 |
1.438 |
1.442 |
C25 |
C24 |
1.526 |
1.530 |
C25 |
N26 |
1.475 |
1.468 |
C29 |
N26 |
1.477 |
1.470 |
C29 |
C32 |
1.584 |
1.541 |
O31 |
C32 |
1.417 |
1.441 |
C24 |
C23 |
1.534 |
1.531 |
N26 |
C27 |
1.476 |
1.468 |
C23 |
C12 |
1.512 |
1.507 |
C23 |
C28 |
1.530 |
1.531 |
C18 |
C17 |
1.525 |
1.545 |
C18 |
C19 |
1.546 |
1.543 |
C27 |
C28 |
1.529 |
1.530 |
C17 |
N16 |
1.467 |
1.485 |
C13 |
C12 |
1.393 |
1.386 |
C13 |
C14 |
1.403 |
1.390 |
C12 |
C11 |
1.389 |
1.386 |
N16 |
C14 |
1.388 |
1.390 |
N16 |
C20 |
1.479 |
1.486 |
C14 |
N15 |
1.342 |
1.325 |
C11 |
C10 |
1.393 |
1.389 |
F22 |
C19 |
1.372 |
1.398 |
C20 |
C19 |
1.549 |
1.544 |
C19 |
F21 |
1.370 |
1.399 |
N15 |
C10 |
1.338 |
1.326 |
C10 |
N9 |
1.386 |
1.392 |
N9 |
C4 |
1.385 |
1.392 |
C4 |
N3 |
1.351 |
1.324 |
C4 |
C5 |
1.405 |
1.391 |
N3 |
C2 |
1.344 |
1.319 |
C5 |
C6 |
1.394 |
1.396 |
C2 |
C1 |
1.382 |
1.379 |
C6 |
C1 |
1.389 |
1.402 |
C6 |
C7 |
1.442 |
1.432 |
C7 |
N8 |
1.143 |
1.137 |
C5 |
H1 |
1.080 |
1.080 |
C11 |
H2 |
1.080 |
1.080 |
C13 |
H3 |
1.080 |
1.080 |
C1 |
H4 |
1.080 |
1.080 |
C2 |
H5 |
1.080 |
1.080 |
N9 |
H6 |
1.000 |
0.969 |
C17 |
H7 |
1.100 |
1.090 |
C17 |
H8 |
1.100 |
1.090 |
C18 |
H9 |
1.100 |
1.090 |
C18 |
H10 |
1.100 |
1.089 |
C20 |
H11 |
1.100 |
1.090 |
C20 |
H12 |
1.100 |
1.091 |
C23 |
H13 |
1.100 |
1.090 |
C24 |
H14 |
1.100 |
1.090 |
C24 |
H15 |
1.100 |
1.089 |
C25 |
H16 |
1.100 |
1.090 |
C25 |
H17 |
1.100 |
1.090 |
C27 |
H19 |
1.100 |
1.091 |
C27 |
H20 |
1.100 |
1.090 |
C28 |
H21 |
1.100 |
1.090 |
C28 |
H22 |
1.100 |
1.091 |
C29 |
H23 |
1.100 |
1.089 |
C30 |
H24 |
1.100 |
1.090 |
C30 |
H25 |
1.100 |
1.089 |
C32 |
H26 |
1.100 |
1.089 |
C32 |
H27 |
1.100 |
1.091 |
Bond Angles for 50D
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C30 |
C29 |
C32 |
81.1 |
85.8 |
C30 |
C29 |
H23 |
113.3 |
114.0 |
C30 |
O31 |
C32 |
91.7 |
93.3 |
O31 |
C30 |
H24 |
114.7 |
113.9 |
O31 |
C30 |
H25 |
114.7 |
113.8 |
C25 |
C24 |
H14 |
109.1 |
109.5 |
C25 |
C24 |
H15 |
109.0 |
109.6 |
C25 |
N26 |
C27 |
111.0 |
111.2 |
N26 |
C25 |
H16 |
108.9 |
109.5 |
N26 |
C25 |
H17 |
108.9 |
109.5 |
C29 |
C32 |
O31 |
87.5 |
85.5 |
C32 |
C29 |
H23 |
113.0 |
113.8 |
C29 |
C32 |
H26 |
114.7 |
113.9 |
C29 |
C32 |
H27 |
114.6 |
113.8 |
O31 |
C32 |
H26 |
114.7 |
113.9 |
O31 |
C32 |
H27 |
114.7 |
113.9 |
C24 |
C23 |
C28 |
109.2 |
109.1 |
C24 |
C23 |
H13 |
106.2 |
109.6 |
N26 |
C27 |
C28 |
112.2 |
109.5 |
N26 |
C27 |
H19 |
108.8 |
109.5 |
N26 |
C27 |
H20 |
108.8 |
109.5 |
C23 |
C28 |
C27 |
110.9 |
109.3 |
C28 |
C23 |
H13 |
106.3 |
109.5 |
C23 |
C28 |
H21 |
109.1 |
109.5 |
C23 |
C28 |
H22 |
109.1 |
109.5 |
C18 |
C17 |
H7 |
110.1 |
110.4 |
C18 |
C17 |
H8 |
110.1 |
110.5 |
C18 |
C19 |
F21 |
110.1 |
110.3 |
C19 |
C18 |
H9 |
111.4 |
110.3 |
C19 |
C18 |
H10 |
111.4 |
110.3 |
C28 |
C27 |
H19 |
108.8 |
109.5 |
C28 |
C27 |
H20 |
108.8 |
109.5 |
C27 |
C28 |
H21 |
109.1 |
109.5 |
C27 |
C28 |
H22 |
109.1 |
109.5 |
C17 |
N16 |
C20 |
111.1 |
104.3 |
C13 |
C14 |
N15 |
121.2 |
120.7 |
C12 |
C11 |
H2 |
120.6 |
120.3 |
N16 |
C20 |
C19 |
103.4 |
104.6 |
N16 |
C20 |
H11 |
111.0 |
110.4 |
N16 |
C20 |
H12 |
111.0 |
110.4 |
C14 |
N15 |
C10 |
119.7 |
121.5 |
C11 |
C10 |
N9 |
118.6 |
119.7 |
C10 |
C11 |
H2 |
120.5 |
120.4 |
C20 |
C19 |
F21 |
111.0 |
110.3 |
C10 |
N9 |
H6 |
113.6 |
120.0 |
C5 |
C4 |
N3 |
123.1 |
120.7 |
C4 |
N3 |
C2 |
117.4 |
121.9 |
C4 |
C5 |
C6 |
117.6 |
118.9 |
C4 |
C5 |
H1 |
121.2 |
120.5 |
N3 |
C2 |
C1 |
123.7 |
121.0 |
N3 |
C2 |
H5 |
118.1 |
119.5 |
C5 |
C6 |
C1 |
119.8 |
118.3 |
C5 |
C6 |
C7 |
119.8 |
120.9 |
C6 |
C5 |
H1 |
121.2 |
120.6 |
C2 |
C1 |
H4 |
120.8 |
120.4 |
C7 |
C6 |
C1 |
120.4 |
120.9 |
C6 |
C1 |
H4 |
120.8 |
120.4 |
C6 |
C7 |
N8 |
178.4 |
179.9 |
H7 |
C17 |
H8 |
109.4 |
110.4 |
H9 |
C18 |
H10 |
109.4 |
110.4 |
H11 |
C20 |
H12 |
109.4 |
110.5 |
H14 |
C24 |
H15 |
109.4 |
109.5 |
H16 |
C25 |
H17 |
109.5 |
109.4 |
H19 |
C27 |
H20 |
109.4 |
109.4 |
H21 |
C28 |
H22 |
109.5 |
109.5 |
H24 |
C30 |
H25 |
109.4 |
113.1 |
H26 |
C32 |
H27 |
109.5 |
113.1 |
Torsion Angles for 50D
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C30 |
C29 |
C32 |
O31 |
25.2 |
337.4 |
C32 |
C29 |
C30 |
H23 |
111.3 |
114.2 |
C30 |
C29 |
C32 |
H26 |
141.3 |
91.6 |
C30 |
C29 |
C32 |
H27 |
269.2 |
223.2 |
O31 |
C30 |
C29 |
C32 |
335.2 |
22.6 |
O31 |
C30 |
C29 |
H23 |
223.9 |
268.4 |
C29 |
C32 |
O31 |
C30 |
332.7 |
24.2 |
C30 |
O31 |
C32 |
H26 |
216.6 |
270.0 |
C30 |
O31 |
C32 |
H27 |
88.7 |
138.3 |
H24 |
C30 |
O31 |
H25 |
127.9 |
131.7 |
C25 |
C24 |
C23 |
C28 |
54.9 |
57.7 |
C25 |
C24 |
C23 |
H13 |
300.7 |
297.7 |
H14 |
C24 |
C25 |
H15 |
240.5 |
120.1 |
N26 |
C25 |
C24 |
H14 |
63.4 |
180.9 |
N26 |
C25 |
C24 |
H15 |
182.9 |
60.8 |
C25 |
N26 |
C27 |
C28 |
303.3 |
298.3 |
C25 |
N26 |
C27 |
H19 |
63.8 |
58.3 |
C25 |
N26 |
C27 |
H20 |
182.9 |
178.2 |
H16 |
C25 |
N26 |
H17 |
119.3 |
120.0 |
C29 |
N26 |
C25 |
H16 |
62.7 |
65.8 |
C29 |
N26 |
C25 |
H17 |
303.4 |
305.9 |
C29 |
N26 |
C27 |
H19 |
298.3 |
294.2 |
C29 |
N26 |
C27 |
H20 |
57.4 |
54.2 |
C30 |
C29 |
C32 |
H23 |
248.4 |
245.6 |
C30 |
O31 |
C32 |
C29 |
332.7 |
24.2 |
O31 |
C32 |
C29 |
H26 |
243.9 |
245.8 |
O31 |
C32 |
C29 |
H27 |
116.1 |
114.2 |
H26 |
C32 |
C29 |
H27 |
232.1 |
228.4 |
C32 |
O31 |
C30 |
H24 |
271.6 |
221.7 |
C32 |
O31 |
C30 |
H25 |
143.7 |
90.0 |
O31 |
C32 |
C29 |
H23 |
136.8 |
91.8 |
C29 |
C32 |
O31 |
H26 |
116.1 |
114.2 |
C29 |
C32 |
O31 |
H27 |
244.0 |
245.9 |
H26 |
C32 |
O31 |
H27 |
127.9 |
131.7 |
C24 |
C23 |
C28 |
C27 |
305.7 |
302.3 |
C28 |
C23 |
C24 |
H13 |
114.2 |
119.9 |
C24 |
C23 |
C28 |
H21 |
65.9 |
62.3 |
C24 |
C23 |
C28 |
H22 |
185.5 |
182.4 |
C27 |
N26 |
C25 |
H16 |
296.6 |
301.7 |
C27 |
N26 |
C25 |
H17 |
177.3 |
181.8 |
C23 |
C28 |
C27 |
N26 |
56.1 |
59.2 |
C28 |
C27 |
N26 |
H19 |
239.6 |
240.0 |
C28 |
C27 |
N26 |
H20 |
120.4 |
120.0 |
N26 |
C27 |
C28 |
H21 |
295.9 |
299.2 |
N26 |
C27 |
C28 |
H22 |
176.3 |
179.1 |
H19 |
C27 |
N26 |
H20 |
240.9 |
240.0 |
C23 |
C12 |
C11 |
H2 |
5.4 |
360.0 |
C24 |
C23 |
C28 |
H13 |
245.8 |
240.0 |
N26 |
C27 |
C28 |
C23 |
56.1 |
59.2 |
C23 |
C28 |
C27 |
H19 |
295.6 |
299.2 |
C23 |
C28 |
C27 |
H20 |
176.5 |
179.2 |
C27 |
C28 |
C23 |
H21 |
239.8 |
240.1 |
C27 |
C28 |
C23 |
H22 |
120.2 |
120.0 |
H21 |
C28 |
C23 |
H22 |
240.4 |
239.9 |
C18 |
C17 |
N16 |
C20 |
347.5 |
320.6 |
H7 |
C17 |
C18 |
H8 |
239.3 |
122.4 |
C19 |
C18 |
C17 |
H7 |
147.8 |
265.1 |
C19 |
C18 |
C17 |
H8 |
268.6 |
142.7 |
N16 |
C20 |
C19 |
C18 |
26.7 |
336.2 |
C20 |
C19 |
C18 |
F21 |
240.1 |
241.2 |
H9 |
C18 |
C19 |
H10 |
122.5 |
122.2 |
N26 |
C27 |
C28 |
H19 |
120.4 |
120.0 |
N26 |
C27 |
C28 |
H20 |
239.6 |
240.0 |
C27 |
C28 |
C23 |
H13 |
59.9 |
62.3 |
C23 |
C28 |
C27 |
H21 |
120.2 |
119.9 |
C23 |
C28 |
C27 |
H22 |
239.8 |
240.0 |
H19 |
C27 |
C28 |
H20 |
119.1 |
119.9 |
H21 |
C28 |
C27 |
H22 |
119.6 |
120.1 |
C17 |
N16 |
C20 |
C19 |
351.1 |
39.5 |
C17 |
N16 |
C20 |
H11 |
110.1 |
158.3 |
C17 |
N16 |
C20 |
H12 |
232.0 |
280.7 |
C12 |
C13 |
C14 |
N15 |
1.9 |
360.0 |
C13 |
C12 |
C11 |
H2 |
180.6 |
180.0 |
C13 |
C14 |
N15 |
C10 |
359.6 |
0.0 |
C12 |
C11 |
C10 |
N9 |
179.9 |
180.0 |
C10 |
C11 |
C12 |
H2 |
180.0 |
180.0 |
N16 |
C20 |
C19 |
F21 |
267.4 |
217.3 |
H11 |
C20 |
N16 |
H12 |
238.1 |
237.6 |
C12 |
C11 |
C10 |
H2 |
180.0 |
180.0 |
C14 |
N15 |
C10 |
C11 |
359.0 |
0.0 |
C11 |
C10 |
N9 |
H6 |
356.5 |
5.3 |
F22 |
C19 |
C18 |
H9 |
84.8 |
122.1 |
F22 |
C19 |
C18 |
H10 |
322.3 |
359.9 |
C18 |
C19 |
C20 |
F21 |
119.3 |
118.9 |
C20 |
C19 |
C18 |
H9 |
207.6 |
241.1 |
C20 |
C19 |
C18 |
H10 |
85.1 |
118.9 |
N16 |
C20 |
C19 |
H11 |
119.0 |
118.8 |
N16 |
C20 |
C19 |
H12 |
241.0 |
241.3 |
F21 |
C19 |
C18 |
H9 |
327.6 |
360.0 |
F21 |
C19 |
C18 |
H10 |
205.0 |
237.7 |
N15 |
C10 |
C11 |
H2 |
180.9 |
179.9 |
N15 |
C10 |
N9 |
H6 |
175.5 |
185.4 |
C14 |
N15 |
C10 |
N9 |
180.0 |
180.0 |
N9 |
C10 |
C11 |
H2 |
359.9 |
360.0 |
N9 |
C4 |
C5 |
H1 |
0.7 |
359.6 |
N3 |
C4 |
C5 |
C6 |
0.7 |
0.0 |
N3 |
C4 |
C5 |
H1 |
180.7 |
180.0 |
C4 |
N3 |
C2 |
C1 |
358.0 |
0.1 |
C4 |
N3 |
C2 |
H5 |
178.1 |
179.9 |
C5 |
C4 |
N3 |
C2 |
1.1 |
360.0 |
C4 |
C5 |
C6 |
C1 |
358.3 |
360.0 |
C4 |
C5 |
C6 |
C7 |
177.6 |
180.0 |
C6 |
C5 |
C4 |
H1 |
180.0 |
180.0 |
N3 |
C2 |
C1 |
H4 |
181.0 |
180.0 |
C6 |
C5 |
C4 |
N3 |
0.7 |
0.0 |
C4 |
C5 |
C6 |
H1 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
C1 |
179.3 |
180.0 |
C5 |
C6 |
C1 |
H4 |
180.9 |
179.9 |
C5 |
C6 |
C7 |
N8 |
168.5 |
89.8 |
N3 |
C2 |
C1 |
H5 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
H4 |
180.0 |
179.9 |
N3 |
C2 |
C1 |
C6 |
1.0 |
360.0 |
C5 |
C6 |
C1 |
C7 |
179.3 |
180.0 |
C1 |
C6 |
C5 |
H1 |
178.3 |
180.0 |
C2 |
C1 |
C6 |
H4 |
180.0 |
180.1 |
C1 |
C6 |
C7 |
N8 |
347.8 |
269.8 |
C5 |
C6 |
C7 |
C1 |
180.7 |
180.0 |
C7 |
C6 |
C5 |
H1 |
357.6 |
0.0 |
C7 |
C6 |
C1 |
H4 |
1.6 |
360.0 |
N8 |
C7 |
C6 |
C1 |
347.8 |
269.8 |
H1 |
C5 |
C4 |
N3 |
180.7 |
180.0 |
C4 |
C5 |
H1 |
C6 |
180.0 |
180.1 |
H1 |
C5 |
C6 |
C1 |
178.3 |
180.0 |
H1 |
C5 |
C6 |
C7 |
357.6 |
0.0 |
H2 |
C11 |
C10 |
N9 |
359.9 |
360.0 |
H3 |
C13 |
C14 |
N15 |
181.9 |
180.0 |
N3 |
C2 |
H5 |
C1 |
180.0 |
180.1 |
H5 |
C2 |
C1 |
H4 |
1.0 |
0.1 |
C18 |
C17 |
H7 |
H8 |
121.1 |
237.6 |
H7 |
C17 |
N16 |
C20 |
227.8 |
79.3 |
C18 |
C17 |
H8 |
H7 |
238.9 |
122.4 |
H8 |
C17 |
N16 |
C20 |
107.1 |
201.7 |
H9 |
C18 |
C17 |
H7 |
266.5 |
23.9 |
H9 |
C18 |
C17 |
H8 |
27.3 |
261.6 |
H9 |
C18 |
C19 |
F21 |
327.6 |
360.0 |
C19 |
C18 |
H9 |
H10 |
236.3 |
237.8 |
H10 |
C18 |
C17 |
H7 |
29.1 |
146.2 |
H10 |
C18 |
C17 |
H8 |
149.8 |
23.8 |
H10 |
C18 |
C19 |
F21 |
205.0 |
237.7 |
C19 |
C18 |
H10 |
H9 |
123.7 |
122.2 |
N16 |
C20 |
H11 |
C19 |
245.7 |
244.8 |
N16 |
C20 |
H11 |
H12 |
122.8 |
122.4 |
H11 |
C20 |
C19 |
F21 |
148.3 |
98.5 |
N16 |
C20 |
H12 |
C19 |
114.4 |
115.1 |
N16 |
C20 |
H12 |
H11 |
237.2 |
237.6 |
H12 |
C20 |
C19 |
F21 |
26.4 |
336.0 |
C24 |
C23 |
H13 |
C28 |
116.2 |
119.7 |
H13 |
C23 |
C28 |
C27 |
59.9 |
62.3 |
H13 |
C23 |
C28 |
H21 |
180.1 |
182.2 |
H13 |
C23 |
C28 |
H22 |
299.7 |
302.3 |
C25 |
C24 |
H14 |
H15 |
119.2 |
239.8 |
H14 |
C24 |
C23 |
C28 |
294.6 |
177.6 |
H14 |
C24 |
C23 |
H13 |
180.4 |
57.6 |
C25 |
C24 |
H15 |
H14 |
240.7 |
120.1 |
H15 |
C24 |
C23 |
C28 |
175.1 |
297.7 |
H15 |
C24 |
C23 |
H13 |
60.9 |
177.7 |
H16 |
C25 |
C24 |
H14 |
183.7 |
300.9 |
H16 |
C25 |
C24 |
H15 |
303.2 |
180.8 |
H16 |
C25 |
N26 |
C27 |
296.6 |
301.7 |
N26 |
C25 |
H16 |
H17 |
241.1 |
240.0 |
H17 |
C25 |
C24 |
H14 |
303.1 |
60.9 |
H17 |
C25 |
C24 |
H15 |
62.6 |
300.7 |
H17 |
C25 |
N26 |
C27 |
177.3 |
181.8 |
N26 |
C25 |
H17 |
H16 |
118.9 |
120.0 |
N26 |
C27 |
H19 |
C28 |
237.5 |
239.9 |
N26 |
C27 |
H19 |
H20 |
118.7 |
120.0 |
C28 |
C27 |
H19 |
H20 |
241.3 |
240.0 |
H19 |
C27 |
C28 |
H21 |
175.4 |
179.2 |
H19 |
C27 |
C28 |
H22 |
55.9 |
59.1 |
N26 |
C27 |
H20 |
C28 |
122.5 |
120.1 |
N26 |
C27 |
H20 |
H19 |
241.2 |
240.0 |
C28 |
C27 |
H20 |
H19 |
118.7 |
120.0 |
H20 |
C27 |
C28 |
H21 |
56.3 |
59.3 |
H20 |
C27 |
C28 |
H22 |
296.7 |
299.2 |
C23 |
C28 |
H21 |
C27 |
238.7 |
240.2 |
H21 |
C28 |
C23 |
H13 |
180.1 |
182.2 |
C23 |
C28 |
H21 |
H22 |
119.4 |
120.1 |
H21 |
C28 |
C27 |
H19 |
175.4 |
179.2 |
H21 |
C28 |
C27 |
H20 |
56.3 |
59.3 |
C27 |
C28 |
H21 |
H22 |
240.7 |
239.9 |
C23 |
C28 |
H22 |
C27 |
121.3 |
119.8 |
H22 |
C28 |
C23 |
H13 |
299.7 |
302.3 |
C23 |
C28 |
H22 |
H21 |
240.7 |
239.9 |
H22 |
C28 |
C27 |
H19 |
55.9 |
59.1 |
H22 |
C28 |
C27 |
H20 |
296.7 |
299.2 |
C27 |
C28 |
H22 |
H21 |
119.3 |
120.1 |
C30 |
C29 |
H23 |
C32 |
89.9 |
96.2 |
H23 |
C29 |
C32 |
O31 |
136.8 |
91.8 |
H23 |
C29 |
C32 |
H26 |
252.9 |
206.0 |
H23 |
C29 |
C32 |
H27 |
20.7 |
337.6 |
H24 |
C30 |
C29 |
C32 |
91.2 |
136.7 |
H24 |
C30 |
C29 |
H23 |
339.9 |
22.5 |
H24 |
C30 |
O31 |
C32 |
271.6 |
221.7 |
O31 |
C30 |
H24 |
H25 |
229.5 |
227.9 |
H25 |
C30 |
C29 |
C32 |
219.1 |
268.5 |
H25 |
C30 |
C29 |
H23 |
107.8 |
154.2 |
H25 |
C30 |
O31 |
C32 |
143.7 |
90.0 |
O31 |
C30 |
H25 |
H24 |
130.5 |
132.1 |
C29 |
C32 |
H26 |
O31 |
261.0 |
264.1 |
H26 |
C32 |
C29 |
H23 |
252.9 |
206.0 |
C29 |
C32 |
H26 |
H27 |
130.5 |
132.0 |
O31 |
C32 |
H26 |
H27 |
229.5 |
227.9 |
C29 |
C32 |
H27 |
O31 |
99.0 |
95.9 |
H27 |
C32 |
C29 |
H23 |
20.7 |
337.6 |
C29 |
C32 |
H27 |
H26 |
229.5 |
228.0 |
O31 |
C32 |
H27 |
H26 |
130.5 |
132.1 |