PDB Chemical Component 508
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 508
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
C15 |
1.398 |
1.382 |
| C14 |
C13 |
1.396 |
1.382 |
| C15 |
C16 |
1.393 |
1.383 |
| C13 |
C12 |
1.399 |
1.382 |
| C16 |
C11 |
1.398 |
1.383 |
| C12 |
C11 |
1.403 |
1.382 |
| C11 |
C8 |
1.515 |
1.507 |
| C9 |
C8 |
1.541 |
1.530 |
| C9 |
C10 |
1.543 |
1.528 |
| C8 |
C7 |
1.534 |
1.531 |
| C31 |
C30 |
1.401 |
1.383 |
| C31 |
C26 |
1.401 |
1.383 |
| C30 |
C29 |
1.396 |
1.382 |
| C10 |
C26 |
1.525 |
1.507 |
| C10 |
N5 |
1.476 |
1.469 |
| C26 |
C27 |
1.405 |
1.382 |
| C7 |
C6 |
1.533 |
1.531 |
| C19 |
C20 |
1.508 |
1.506 |
| C19 |
C18 |
1.530 |
1.526 |
| C22 |
C20 |
1.327 |
1.388 |
| C22 |
C23 |
1.490 |
1.380 |
| C29 |
C28 |
1.393 |
1.382 |
| C20 |
C21 |
1.500 |
1.379 |
| N5 |
C6 |
1.475 |
1.469 |
| N5 |
C4 |
1.353 |
1.348 |
| C23 |
C24 |
1.325 |
1.382 |
| C18 |
C17 |
1.534 |
1.534 |
| C27 |
C28 |
1.396 |
1.382 |
| O |
C4 |
1.225 |
1.213 |
| C4 |
C3 |
1.515 |
1.506 |
| C17 |
C |
1.549 |
1.523 |
| C24 |
C25 |
1.492 |
1.380 |
| C21 |
C25 |
1.332 |
1.389 |
| C21 |
C |
1.529 |
1.503 |
| C |
C3 |
1.541 |
1.540 |
| C |
C1 |
1.535 |
1.540 |
| C3 |
C2 |
1.530 |
1.545 |
| C2 |
N |
1.485 |
1.486 |
| C1 |
N |
1.490 |
1.487 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H2 |
1.100 |
1.091 |
| N |
H3 |
1.000 |
1.009 |
| C2 |
H5 |
1.100 |
1.090 |
| C2 |
H6 |
1.100 |
1.090 |
| C3 |
H7 |
1.100 |
1.089 |
| C6 |
H8 |
1.100 |
1.090 |
| C6 |
H9 |
1.100 |
1.090 |
| C7 |
H10 |
1.100 |
1.089 |
| C7 |
H11 |
1.100 |
1.090 |
| C8 |
H12 |
1.100 |
1.090 |
| C9 |
H13 |
1.100 |
1.090 |
| C9 |
H14 |
1.100 |
1.090 |
| C10 |
H15 |
1.100 |
1.090 |
| C12 |
H16 |
1.079 |
1.080 |
| C13 |
H17 |
1.080 |
1.080 |
| C14 |
H18 |
1.079 |
1.080 |
| C15 |
H19 |
1.080 |
1.080 |
| C16 |
H20 |
1.080 |
1.080 |
| C17 |
H21 |
1.100 |
1.090 |
| C17 |
H22 |
1.100 |
1.090 |
| C18 |
H23 |
1.100 |
1.090 |
| C18 |
H24 |
1.100 |
1.090 |
| C19 |
H25 |
1.100 |
1.089 |
| C19 |
H26 |
1.100 |
1.091 |
| C22 |
H27 |
1.080 |
1.080 |
| C23 |
H28 |
1.080 |
1.080 |
| C24 |
H29 |
1.080 |
1.080 |
| C25 |
H30 |
1.080 |
1.079 |
| C27 |
H31 |
1.080 |
1.081 |
| C28 |
H32 |
1.080 |
1.080 |
| C29 |
H33 |
1.081 |
1.081 |
| C30 |
H34 |
1.080 |
1.079 |
| C31 |
H35 |
1.080 |
1.079 |
Bond Angles for 508
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C15 |
C16 |
120.7 |
120.0 |
| C15 |
C14 |
H18 |
120.1 |
120.0 |
| C14 |
C15 |
H19 |
119.6 |
120.0 |
| C14 |
C13 |
H17 |
120.4 |
120.0 |
| C16 |
C15 |
H19 |
119.6 |
120.0 |
| C15 |
C16 |
H20 |
119.9 |
120.0 |
| C13 |
C12 |
H16 |
119.3 |
120.0 |
| C11 |
C8 |
H12 |
103.8 |
109.4 |
| C9 |
C8 |
H12 |
105.0 |
109.4 |
| C9 |
C10 |
C26 |
121.0 |
109.6 |
| C10 |
C9 |
H13 |
109.0 |
109.6 |
| C10 |
C9 |
H14 |
109.0 |
109.3 |
| C9 |
C10 |
H15 |
105.0 |
109.5 |
| C8 |
C7 |
H10 |
109.4 |
109.5 |
| C8 |
C7 |
H11 |
109.5 |
109.5 |
| C31 |
C30 |
H34 |
119.9 |
120.0 |
| C30 |
C29 |
H33 |
120.1 |
120.0 |
| C10 |
C26 |
C27 |
118.4 |
120.0 |
| C26 |
C10 |
H15 |
94.6 |
109.6 |
| C26 |
C27 |
C28 |
122.2 |
120.0 |
| C26 |
C27 |
H31 |
118.9 |
120.0 |
| C7 |
C6 |
H8 |
109.8 |
109.6 |
| C7 |
C6 |
H9 |
109.8 |
109.7 |
| C19 |
C20 |
C21 |
120.8 |
122.4 |
| C20 |
C19 |
H25 |
109.2 |
109.2 |
| C20 |
C19 |
H26 |
109.2 |
109.1 |
| C19 |
C18 |
H23 |
109.9 |
109.7 |
| C19 |
C18 |
H24 |
109.9 |
109.8 |
| C22 |
C23 |
C24 |
118.4 |
119.7 |
| C23 |
C22 |
H27 |
119.6 |
119.7 |
| C22 |
C23 |
H28 |
120.8 |
120.1 |
| C29 |
C28 |
H32 |
120.3 |
120.0 |
| C20 |
C21 |
C25 |
116.2 |
119.7 |
| N5 |
C6 |
H8 |
109.8 |
109.6 |
| N5 |
C6 |
H9 |
109.8 |
109.6 |
| C23 |
C24 |
C25 |
120.4 |
119.8 |
| C24 |
C23 |
H28 |
120.8 |
120.2 |
| C23 |
C24 |
H29 |
119.8 |
120.1 |
| C18 |
C17 |
H21 |
107.1 |
109.7 |
| C18 |
C17 |
H22 |
107.1 |
109.7 |
| C28 |
C27 |
H31 |
118.9 |
120.0 |
| C27 |
C28 |
H32 |
120.3 |
120.0 |
| C4 |
C3 |
H7 |
103.1 |
110.4 |
| C21 |
C25 |
C24 |
122.5 |
120.5 |
| C25 |
C24 |
H29 |
119.8 |
120.1 |
| C24 |
C25 |
H30 |
118.8 |
119.7 |
| C21 |
C25 |
H30 |
118.8 |
119.8 |
| C1 |
C |
C3 |
100.7 |
105.4 |
| C |
C3 |
C2 |
106.3 |
104.9 |
| C |
C3 |
H7 |
107.2 |
110.4 |
| C |
C1 |
N |
108.7 |
104.6 |
| C |
C1 |
H1 |
109.8 |
110.5 |
| C |
C1 |
H2 |
109.7 |
110.4 |
| C3 |
C2 |
H5 |
111.1 |
110.4 |
| C3 |
C2 |
H6 |
111.1 |
110.5 |
| C2 |
N |
H3 |
109.8 |
111.0 |
| N |
C1 |
H1 |
109.7 |
110.4 |
| N |
C1 |
H2 |
109.7 |
110.4 |
| C1 |
N |
H3 |
109.8 |
111.0 |
| H1 |
C1 |
H2 |
109.2 |
110.5 |
| H5 |
C2 |
H6 |
107.8 |
110.3 |
| H8 |
C6 |
H9 |
109.1 |
109.5 |
| H10 |
C7 |
H11 |
109.5 |
109.5 |
| H13 |
C9 |
H14 |
110.0 |
109.5 |
| H21 |
C17 |
H22 |
111.8 |
109.7 |
| H23 |
C18 |
H24 |
109.1 |
109.6 |
| H25 |
C19 |
H26 |
109.7 |
109.2 |
Torsion Angles for 508
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C15 |
C14 |
C13 |
H17 |
179.8 |
180.0 |
| C16 |
C15 |
C14 |
H19 |
180.0 |
179.7 |
| C14 |
C15 |
C16 |
H20 |
180.2 |
180.0 |
| C14 |
C13 |
C12 |
H16 |
179.9 |
180.0 |
| C16 |
C15 |
C14 |
H18 |
180.2 |
180.0 |
| C14 |
C15 |
C16 |
H19 |
180.0 |
180.3 |
| C16 |
C11 |
C8 |
H12 |
194.8 |
179.7 |
| C12 |
C11 |
C8 |
H12 |
15.1 |
360.0 |
| C9 |
C8 |
C11 |
H12 |
114.1 |
119.9 |
| C11 |
C8 |
C7 |
H10 |
307.6 |
58.6 |
| C11 |
C8 |
C7 |
H11 |
67.7 |
298.5 |
| C11 |
C8 |
C9 |
H12 |
246.6 |
240.1 |
| C9 |
C8 |
C7 |
H10 |
79.0 |
178.7 |
| C9 |
C8 |
C7 |
H11 |
199.0 |
58.6 |
| C10 |
C9 |
C8 |
H12 |
305.2 |
301.1 |
| C9 |
C10 |
C26 |
C27 |
158.3 |
235.5 |
| C26 |
C10 |
C9 |
H15 |
104.9 |
120.3 |
| H13 |
C9 |
C10 |
H14 |
120.0 |
120.0 |
| C8 |
C7 |
C6 |
H8 |
100.0 |
294.8 |
| C8 |
C7 |
C6 |
H9 |
220.0 |
174.5 |
| H10 |
C7 |
C8 |
H11 |
240.0 |
120.1 |
| C31 |
C30 |
C29 |
H33 |
179.9 |
179.8 |
| C31 |
C26 |
C10 |
H15 |
88.4 |
175.5 |
| C31 |
C26 |
C27 |
H31 |
180.3 |
180.2 |
| C30 |
C29 |
C28 |
H32 |
179.8 |
180.0 |
| C26 |
C10 |
C9 |
H13 |
89.8 |
65.5 |
| C26 |
C10 |
C9 |
H14 |
329.8 |
305.5 |
| C9 |
C10 |
C26 |
H15 |
249.5 |
239.8 |
| C10 |
C26 |
C27 |
C28 |
180.0 |
180.0 |
| C10 |
C26 |
C27 |
H31 |
359.9 |
360.0 |
| C10 |
N5 |
C6 |
H8 |
311.6 |
66.5 |
| C10 |
N5 |
C6 |
H9 |
191.7 |
186.7 |
| C27 |
C26 |
C10 |
H15 |
268.8 |
355.8 |
| C28 |
C27 |
C26 |
H31 |
180.0 |
180.0 |
| C26 |
C27 |
C28 |
H32 |
180.1 |
180.0 |
| N5 |
C6 |
C7 |
H8 |
240.0 |
119.8 |
| N5 |
C6 |
C7 |
H9 |
120.0 |
240.1 |
| H8 |
C6 |
C7 |
H9 |
240.0 |
120.3 |
| C20 |
C19 |
C18 |
H23 |
60.9 |
188.8 |
| C20 |
C19 |
C18 |
H24 |
180.9 |
68.3 |
| C19 |
C20 |
C21 |
C25 |
180.5 |
179.6 |
| H25 |
C19 |
C20 |
H26 |
240.0 |
119.4 |
| C19 |
C18 |
C17 |
H21 |
179.2 |
309.3 |
| C19 |
C18 |
C17 |
H22 |
299.2 |
188.8 |
| H23 |
C18 |
C19 |
H24 |
240.0 |
120.6 |
| C22 |
C20 |
C19 |
H25 |
332.5 |
78.0 |
| C22 |
C20 |
C19 |
H26 |
92.6 |
318.7 |
| C22 |
C20 |
C21 |
C25 |
360.0 |
359.7 |
| C22 |
C23 |
C24 |
C25 |
360.0 |
359.9 |
| C24 |
C23 |
C22 |
H28 |
180.0 |
180.0 |
| C22 |
C23 |
C24 |
H29 |
180.0 |
179.9 |
| C29 |
C28 |
C27 |
H31 |
180.1 |
180.0 |
| C27 |
C28 |
C29 |
H32 |
180.0 |
180.0 |
| C21 |
C20 |
C19 |
H25 |
152.1 |
258.2 |
| C21 |
C20 |
C19 |
H26 |
272.1 |
138.8 |
| C20 |
C21 |
C25 |
C24 |
359.9 |
0.2 |
| C20 |
C21 |
C25 |
H30 |
179.8 |
180.2 |
| C7 |
C6 |
N5 |
H8 |
120.0 |
240.2 |
| C7 |
C6 |
N5 |
H9 |
240.0 |
120.0 |
| H8 |
C6 |
N5 |
H9 |
120.0 |
239.8 |
| N5 |
C4 |
C3 |
H7 |
349.9 |
325.0 |
| C24 |
C23 |
C22 |
H27 |
179.9 |
180.0 |
| C22 |
C23 |
C24 |
H28 |
180.0 |
180.0 |
| C21 |
C25 |
C24 |
C23 |
0.2 |
360.0 |
| C25 |
C24 |
C23 |
H29 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
H30 |
180.2 |
180.0 |
| H21 |
C17 |
C18 |
H22 |
240.0 |
120.5 |
| C26 |
C27 |
C28 |
H31 |
180.0 |
180.0 |
| C29 |
C28 |
C27 |
H32 |
180.0 |
180.0 |
| O |
C4 |
C3 |
H7 |
170.2 |
145.0 |
| C |
C3 |
C4 |
H7 |
117.1 |
122.3 |
| C4 |
C3 |
C2 |
H5 |
322.4 |
146.1 |
| C4 |
C3 |
C2 |
H6 |
82.4 |
23.8 |
| C17 |
C |
C3 |
H7 |
157.4 |
122.6 |
| C17 |
C |
C1 |
H1 |
213.6 |
213.7 |
| C17 |
C |
C1 |
H2 |
333.7 |
336.2 |
| C25 |
C24 |
C23 |
H28 |
180.0 |
179.9 |
| C23 |
C24 |
C25 |
H29 |
180.0 |
180.0 |
| C21 |
C25 |
C24 |
H30 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
C21 |
0.2 |
360.0 |
| C21 |
C25 |
C24 |
H29 |
180.1 |
180.0 |
| C24 |
C25 |
C21 |
H30 |
180.0 |
180.0 |
| C21 |
C |
C3 |
H7 |
27.0 |
359.5 |
| C21 |
C |
C1 |
H1 |
335.6 |
336.7 |
| C21 |
C |
C1 |
H2 |
95.6 |
99.2 |
| C4 |
C3 |
C |
H7 |
245.2 |
237.7 |
| C3 |
C |
C1 |
N |
335.4 |
336.3 |
| C3 |
C |
C1 |
H1 |
95.4 |
95.1 |
| C3 |
C |
C1 |
H2 |
215.4 |
217.6 |
| C |
C3 |
C2 |
H5 |
89.4 |
265.0 |
| C |
C3 |
C2 |
H6 |
209.4 |
142.6 |
| C1 |
C |
C3 |
C2 |
33.5 |
360.0 |
| C1 |
C |
C3 |
H7 |
271.4 |
241.1 |
| N |
C1 |
C |
H1 |
240.0 |
241.2 |
| N |
C1 |
C |
H2 |
120.0 |
118.7 |
| C |
C1 |
N |
H3 |
246.6 |
279.7 |
| H1 |
C1 |
C |
H2 |
240.0 |
237.5 |
| C |
C3 |
C2 |
H7 |
242.2 |
241.1 |
| C3 |
C2 |
N |
H3 |
134.7 |
80.3 |
| H5 |
C2 |
C3 |
H6 |
240.0 |
122.3 |
| C |
C3 |
C2 |
N |
329.4 |
23.8 |
| C2 |
N |
C1 |
H1 |
246.6 |
280.4 |
| C2 |
N |
C1 |
H2 |
126.7 |
157.9 |
| C1 |
N |
C2 |
H3 |
240.0 |
240.5 |
| N |
C1 |
C |
C3 |
335.4 |
336.3 |
| C |
C1 |
N |
H1 |
120.0 |
118.8 |
| C |
C1 |
N |
H2 |
240.0 |
241.3 |
| C2 |
N |
C1 |
H3 |
120.0 |
119.5 |
| H1 |
C1 |
N |
H2 |
120.0 |
122.5 |
| H1 |
C1 |
C |
C3 |
95.4 |
95.1 |
| C |
C1 |
H1 |
N |
240.6 |
244.8 |
| C |
C1 |
H1 |
H2 |
120.4 |
122.4 |
| N |
C1 |
H1 |
H2 |
239.7 |
237.6 |
| H1 |
C1 |
N |
H3 |
126.6 |
160.9 |
| H2 |
C1 |
C |
C3 |
215.4 |
217.6 |
| C |
C1 |
H2 |
N |
119.4 |
115.1 |
| C |
C1 |
H2 |
H1 |
239.6 |
237.5 |
| N |
C1 |
H2 |
H1 |
120.3 |
122.4 |
| H2 |
C1 |
N |
H3 |
6.7 |
38.4 |
| H3 |
N |
C1 |
H1 |
126.6 |
160.9 |
| H3 |
N |
C1 |
H2 |
6.7 |
38.4 |
| C3 |
C2 |
H5 |
H6 |
122.0 |
237.6 |
| H5 |
C2 |
N |
H3 |
14.7 |
199.1 |
| C3 |
C2 |
H6 |
H5 |
238.0 |
122.4 |
| H6 |
C2 |
N |
H3 |
254.6 |
321.3 |
| C |
C3 |
H7 |
C2 |
117.2 |
115.5 |
| H7 |
C3 |
C2 |
H5 |
207.2 |
23.8 |
| H7 |
C3 |
C2 |
H6 |
327.2 |
261.5 |
| C7 |
C6 |
H8 |
H9 |
120.4 |
239.6 |
| N5 |
C6 |
H8 |
H9 |
239.6 |
120.2 |
| C7 |
C6 |
H9 |
H8 |
239.6 |
120.3 |
| N5 |
C6 |
H9 |
H8 |
120.4 |
239.8 |
| C8 |
C7 |
H10 |
H11 |
120.0 |
239.9 |
| H10 |
C7 |
C6 |
H8 |
340.1 |
54.8 |
| H10 |
C7 |
C6 |
H9 |
100.0 |
294.5 |
| C8 |
C7 |
H11 |
H10 |
240.0 |
120.1 |
| H11 |
C7 |
C6 |
H8 |
220.1 |
174.9 |
| H11 |
C7 |
C6 |
H9 |
340.0 |
54.6 |
| H12 |
C8 |
C7 |
H10 |
193.8 |
298.7 |
| H12 |
C8 |
C7 |
H11 |
313.8 |
178.6 |
| H13 |
C9 |
C8 |
H12 |
65.2 |
61.2 |
| H13 |
C9 |
C10 |
C26 |
89.8 |
65.5 |
| C10 |
C9 |
H13 |
H14 |
240.6 |
240.1 |
| H13 |
C9 |
C10 |
H15 |
345.0 |
305.2 |
| H14 |
C9 |
C8 |
H12 |
185.2 |
181.4 |
| H14 |
C9 |
C10 |
C26 |
329.8 |
305.5 |
| C10 |
C9 |
H14 |
H13 |
119.4 |
120.1 |
| H14 |
C9 |
C10 |
H15 |
224.9 |
185.2 |
| C9 |
C10 |
H15 |
C26 |
123.8 |
120.3 |
| H15 |
C10 |
C9 |
H13 |
345.0 |
305.2 |
| H15 |
C10 |
C9 |
H14 |
224.9 |
185.2 |
| H15 |
C10 |
C26 |
C27 |
268.8 |
355.8 |
| H17 |
C13 |
C12 |
H16 |
359.9 |
360.0 |
| H18 |
C14 |
C15 |
C16 |
180.2 |
180.0 |
| H18 |
C14 |
C15 |
H19 |
0.2 |
0.3 |
| H18 |
C14 |
C13 |
H17 |
359.8 |
359.7 |
| C14 |
C15 |
H19 |
C16 |
180.0 |
179.7 |
| H19 |
C15 |
C14 |
H18 |
0.2 |
0.3 |
| H19 |
C15 |
C16 |
H20 |
0.1 |
359.7 |
| H20 |
C16 |
C15 |
H19 |
0.1 |
359.7 |
| C18 |
C17 |
H21 |
H22 |
117.0 |
239.5 |
| C18 |
C17 |
H22 |
H21 |
243.0 |
120.5 |
| C19 |
C18 |
H23 |
H24 |
120.5 |
239.3 |
| H23 |
C18 |
C17 |
H21 |
59.2 |
69.0 |
| H23 |
C18 |
C17 |
H22 |
179.2 |
308.5 |
| C19 |
C18 |
H24 |
H23 |
239.5 |
120.6 |
| H24 |
C18 |
C17 |
H21 |
299.2 |
189.4 |
| H24 |
C18 |
C17 |
H22 |
59.2 |
68.9 |
| H25 |
C19 |
C20 |
C21 |
152.1 |
258.2 |
| C20 |
C19 |
H25 |
H26 |
119.7 |
240.7 |
| H25 |
C19 |
C18 |
H23 |
300.9 |
309.2 |
| H25 |
C19 |
C18 |
H24 |
60.9 |
188.6 |
| H26 |
C19 |
C20 |
C21 |
272.1 |
138.8 |
| C20 |
C19 |
H26 |
H25 |
240.3 |
119.4 |
| H26 |
C19 |
C18 |
H23 |
180.9 |
68.6 |
| H26 |
C19 |
C18 |
H24 |
300.9 |
308.0 |
| H27 |
C22 |
C23 |
C24 |
179.9 |
180.0 |
| H27 |
C22 |
C23 |
H28 |
359.9 |
0.0 |
| C22 |
C23 |
H28 |
C24 |
180.0 |
180.0 |
| H28 |
C23 |
C22 |
H27 |
359.9 |
0.0 |
| H28 |
C23 |
C24 |
C25 |
180.0 |
179.9 |
| H28 |
C23 |
C24 |
H29 |
360.0 |
359.9 |
| C23 |
C24 |
H29 |
C25 |
180.0 |
180.0 |
| H29 |
C24 |
C23 |
H28 |
360.0 |
359.9 |
| H29 |
C24 |
C25 |
H30 |
0.2 |
360.0 |
| C21 |
C25 |
H30 |
C24 |
180.0 |
180.0 |
| H30 |
C25 |
C24 |
H29 |
0.2 |
360.0 |
| C26 |
C27 |
H31 |
C28 |
180.0 |
180.0 |
| H31 |
C27 |
C28 |
H32 |
0.1 |
0.0 |
| H32 |
C28 |
C27 |
H31 |
0.1 |
0.0 |
| H33 |
C29 |
C28 |
H32 |
359.8 |
360.0 |
| H34 |
C30 |
C29 |
H33 |
359.9 |
0.0 |
| H35 |
C31 |
C30 |
H34 |
0.6 |
359.7 |