PDB Chemical Component 505

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 505

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.522	1.522
C2	N3	1.502	1.502
C2	C4	1.527	1.527
C4	O5	1.456	1.456
O5	C6	1.373	1.373
C6	C7	1.410	1.410
C6	C12	1.408	1.408
C7	C8	1.506	1.506
C7	C9	1.387	1.387
C9	C10	1.381	1.381
C10	C11	1.381	1.381
C11	C12	1.388	1.388
C12	C13	1.508	1.508
C1	H1C1	1.100	1.100
C1	H1C2	1.100	1.100
C1	H1C3	1.100	1.100
C2	H2	1.100	1.100
N3	H3N1	1.000	1.000
N3	H3N2	1.000	1.000
C4	H4C1	1.100	1.100
C4	H4C2	1.100	1.100
C8	H8C1	1.100	1.100
C8	H8C2	1.100	1.100
C8	H8C3	1.100	1.100
C9	H9	1.080	1.080
C10	H10	1.080	1.080
C11	H11	1.081	1.080
C13	H131	1.100	1.100
C13	H132	1.100	1.100
C13	H133	1.100	1.100

Bond Angles for 505

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	N3	106.6	106.6
C1	C2	C4	111.5	111.5
C2	C1	H1C1	109.5	109.5
C2	C1	H1C2	109.5	109.5
C2	C1	H1C3	109.5	109.5
C1	C2	H2	110.5	110.5
N3	C2	C4	110.9	110.9
N3	C2	H2	111.2	111.2
C2	N3	H3N1	109.5	109.5
C2	N3	H3N2	109.5	109.5
C2	C4	O5	109.0	109.0
C4	C2	H2	106.3	106.3
C2	C4	H4C1	109.6	109.6
C2	C4	H4C2	109.7	109.7
C4	O5	C6	117.8	117.8
O5	C4	H4C1	109.6	109.6
O5	C4	H4C2	109.8	109.8
O5	C6	C7	119.6	119.6
O5	C6	C12	120.0	120.0
C7	C6	C12	120.4	120.4
C6	C7	C8	120.8	120.8
C6	C7	C9	118.8	118.8
C6	C12	C11	118.8	118.8
C6	C12	C13	120.8	120.8
C8	C7	C9	120.4	120.4
C7	C8	H8C1	109.5	109.5
C7	C8	H8C2	109.4	109.4
C7	C8	H8C3	109.4	109.4
C7	C9	C10	120.7	120.7
C7	C9	H9	119.6	119.6
C9	C10	C11	120.6	120.6
C10	C9	H9	119.6	119.6
C9	C10	H10	119.7	119.7
C10	C11	C12	120.6	120.6
C11	C10	H10	119.7	119.7
C10	C11	H11	119.7	119.7
C11	C12	C13	120.3	120.3
C12	C11	H11	119.7	119.7
C12	C13	H131	109.5	109.5
C12	C13	H132	109.5	109.4
C12	C13	H133	109.5	109.5
H1C1	C1	H1C2	109.5	109.5
H1C1	C1	H1C3	109.5	109.5
H1C2	C1	H1C3	109.4	109.4
H3N1	N3	H3N2	109.4	109.4
H4C1	C4	H4C2	109.1	109.1
H8C1	C8	H8C2	109.5	109.5
H8C1	C8	H8C3	109.4	109.4
H8C2	C8	H8C3	109.5	109.5
H131	C13	H132	109.4	109.5
H131	C13	H133	109.4	109.4
H132	C13	H133	109.5	109.5

Torsion Angles for 505

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N3	C2	C1	C4	238.9	238.9
N3	C2	C1	H2	120.9	120.9
C1	C2	N3	H3N1	49.9	49.9
C1	C2	N3	H3N2	169.9	169.9
C1	C2	C4	O5	304.3	304.3
C4	C2	C1	H2	242.0	242.0
C1	C2	C4	H4C1	64.3	64.3
C1	C2	C4	H4C2	184.1	184.1
H1C1	C1	C2	H1C2	240.0	240.0
H1C1	C1	C2	H1C3	120.0	120.0
H1C2	C1	C2	H1C3	240.0	240.0
C1	C2	N3	C4	121.5	121.5
N3	C2	C1	H1C1	144.2	144.2
N3	C2	C1	H1C2	264.2	264.2
N3	C2	C1	H1C3	24.1	24.1
C1	C2	N3	H2	239.5	239.5
N3	C2	C4	O5	62.9	62.9
C4	C2	N3	H2	118.0	118.0
N3	C2	C4	H4C1	182.9	182.9
N3	C2	C4	H4C2	302.7	302.7
H3N1	N3	C2	H3N2	240.0	240.1
C1	C2	C4	N3	241.4	241.4
C4	C2	C1	H1C1	265.3	265.3
C4	C2	C1	H1C2	25.3	25.3
C4	C2	C1	H1C3	145.2	145.2
C1	C2	C4	H2	120.5	120.5
N3	C2	C4	H2	239.1	239.1
C4	C2	N3	H3N1	288.4	288.4
C4	C2	N3	H3N2	48.4	48.4
C2	C4	O5	C6	158.6	158.6
O5	C4	C2	H4C1	240.0	240.0
O5	C4	C2	H4C2	120.2	120.2
H4C1	C4	C2	H4C2	240.2	240.2
O5	C4	C2	H2	183.8	183.8
C2	C4	O5	H4C1	120.0	120.0
C2	C4	O5	H4C2	239.8	239.8
C4	O5	C6	C7	258.4	258.4
C4	O5	C6	C12	78.9	78.9
H4C1	C4	O5	H4C2	119.8	119.8
C6	O5	C4	H4C1	38.6	38.6
C6	O5	C4	H4C2	278.8	278.8
C7	C6	O5	C12	179.5	179.5
O5	C6	C7	C8	0.5	0.5
O5	C6	C7	C9	180.0	180.0
O5	C6	C12	C11	179.6	179.6
O5	C6	C12	C13	359.5	359.5
O5	C6	C7	C12	180.5	180.5
C7	C6	C12	C11	0.1	0.1
C7	C6	C12	C13	180.1	180.1
C8	C7	C6	C9	180.5	180.5
C6	C7	C8	H8C1	300.4	300.4
C6	C7	C8	H8C2	60.4	60.4
C6	C7	C8	H8C3	180.4	180.4
C6	C7	C9	C10	0.7	0.7
C6	C7	C9	H9	180.7	180.7
O5	C6	C12	C7	179.5	179.5
C12	C6	C7	C8	180.0	180.0
C12	C6	C7	C9	359.5	359.5
C10	C11	C12	C6	0.2	0.2
C11	C12	C6	C13	180.0	180.0
C6	C12	C11	H11	180.2	180.2
C6	C12	C13	H131	101.2	101.2
C6	C12	C13	H132	221.2	221.2
C6	C12	C13	H133	341.2	341.2
C8	C7	C6	C12	180.0	180.0
C6	C7	C8	C9	179.5	179.5
C8	C7	C9	C10	180.2	180.2
C8	C7	C9	H9	0.2	0.2
H8C1	C8	C7	H8C2	240.0	240.0
H8C1	C8	C7	H8C3	120.0	120.0
H8C2	C8	C7	H8C3	240.0	240.0
C9	C7	C6	C12	359.5	359.5
C6	C7	C9	C8	180.5	180.5
C9	C7	C8	H8C1	120.9	120.9
C9	C7	C8	H8C2	240.9	240.9
C9	C7	C8	H8C3	0.9	0.9
C7	C9	C10	C11	359.6	359.6
C10	C9	C7	H9	180.0	180.0
C7	C9	C10	H10	179.6	179.6
C7	C9	C10	H9	180.0	180.0
C9	C10	C11	C12	360.0	360.0
C11	C10	C9	H10	180.0	180.0
C9	C10	C11	H11	180.0	180.0
C6	C12	C11	C10	0.2	0.2
C11	C10	C9	H9	179.6	179.6
C9	C10	C11	H10	180.0	180.0
C10	C11	C12	C13	180.2	180.2
C12	C11	C10	H11	180.0	180.0
C6	C12	C11	C13	180.0	180.0
C12	C11	C10	H10	180.0	180.0
C10	C11	C12	H11	180.0	180.0
C11	C12	C13	H131	281.2	281.2
C11	C12	C13	H132	41.2	41.2
C11	C12	C13	H133	161.2	161.2
C6	C12	C13	C11	180.0	180.0
C13	C12	C11	H11	0.2	0.2
H131	C13	C12	H132	240.0	240.0
H131	C13	C12	H133	120.0	120.0
H132	C13	C12	H133	240.0	240.0
H1C1	C1	C2	N3	144.2	144.2
H1C1	C1	C2	C4	265.3	265.3
C2	C1	H1C1	H1C2	120.0	120.0
C2	C1	H1C1	H1C3	240.0	240.0
H1C1	C1	C2	H2	23.2	23.2
H1C2	C1	H1C1	H1C3	120.0	120.0
H1C2	C1	C2	N3	264.2	264.2
H1C2	C1	C2	C4	25.3	25.3
C2	C1	H1C2	H1C1	240.0	240.0
C2	C1	H1C2	H1C3	120.0	120.0
H1C2	C1	C2	H2	143.2	143.2
H1C1	C1	H1C2	H1C3	240.0	240.0
H1C3	C1	C2	N3	24.1	24.1
H1C3	C1	C2	C4	145.2	145.2
C2	C1	H1C3	H1C1	120.0	120.0
C2	C1	H1C3	H1C2	240.0	240.0
H1C3	C1	C2	H2	263.2	263.2
H1C1	C1	H1C3	H1C2	120.0	120.0
C1	C2	H2	N3	118.2	118.2
C1	C2	H2	C4	238.9	238.9
H2	C2	C1	H1C1	23.2	23.2
H2	C2	C1	H1C2	143.2	143.2
H2	C2	C1	H1C3	263.2	263.2
N3	C2	H2	C4	120.7	120.7
H2	C2	N3	H3N1	170.4	170.4
H2	C2	N3	H3N2	290.4	290.4
H2	C2	C4	O5	183.8	183.8
H2	C2	C4	H4C1	303.8	303.8
H2	C2	C4	H4C2	63.6	63.6
H3N1	N3	C2	C4	288.4	288.4
H3N1	N3	C2	H2	170.4	170.4
C2	N3	H3N1	H3N2	120.0	120.0
H3N2	N3	C2	C4	48.4	48.4
H3N2	N3	C2	H2	290.4	290.4
C2	N3	H3N2	H3N1	240.0	240.0
C2	C4	H4C1	O5	240.4	240.4
H4C1	C4	C2	H2	303.8	303.8
C2	C4	H4C1	H4C2	120.2	120.2
H4C1	C4	O5	C6	38.6	38.6
O5	C4	H4C1	H4C2	239.8	239.8
C2	C4	H4C2	O5	119.7	119.7
H4C2	C4	C2	H2	63.6	63.6
C2	C4	H4C2	H4C1	239.9	239.9
H4C2	C4	O5	C6	278.8	278.8
O5	C4	H4C2	H4C1	120.1	120.1
H8C1	C8	C7	C9	120.9	120.9
C7	C8	H8C1	H8C2	120.0	120.0
C7	C8	H8C1	H8C3	240.0	240.0
H8C2	C8	H8C1	H8C3	120.0	120.0
H8C2	C8	C7	C9	240.9	240.9
C7	C8	H8C2	H8C1	240.0	240.0
C7	C8	H8C2	H8C3	120.0	120.0
H8C1	C8	H8C2	H8C3	240.0	240.0
H8C3	C8	C7	C9	0.9	0.9
C7	C8	H8C3	H8C1	120.0	120.0
C7	C8	H8C3	H8C2	240.0	240.0
H8C1	C8	H8C3	H8C2	120.0	120.0
C7	C9	H9	C10	180.0	180.0
H9	C9	C10	C11	179.6	179.6
H9	C9	C10	H10	359.6	359.6
C9	C10	H10	C11	180.0	180.0
H10	C10	C9	H9	359.6	359.6
H10	C10	C11	C12	180.0	180.0
H10	C10	C11	H11	0.0	360.0
C10	C11	H11	C12	180.0	180.0
H11	C11	C10	H10	0.0	360.0
H11	C11	C12	C13	0.2	0.2
C12	C13	H131	H132	120.0	120.0
C12	C13	H131	H133	240.0	240.0
H132	C13	H131	H133	120.0	120.0
C12	C13	H132	H131	240.0	240.0
C12	C13	H132	H133	120.0	120.0
H131	C13	H132	H133	240.1	240.0
C12	C13	H133	H131	120.0	120.0
C12	C13	H133	H132	240.0	240.0
H131	C13	H133	H132	119.9	120.0