PDB Chemical Component 4YX

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4YX

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C28 N29 1.467 1.469
C28 C27 1.538 1.530
C23 C22 1.530 1.530
C23 C24 1.546 1.532
C22 N21 1.480 1.469
O30 C24 1.444 1.428
O30 C31 1.436 1.429
C24 C27 1.536 1.530
C24 C25 1.548 1.531
N18 C17 1.327 1.324
N18 C19 1.325 1.325
C17 C16 1.388 1.381
N21 C19 1.387 1.383
N21 C26 1.472 1.468
C19 N20 1.319 1.325
C26 C25 1.547 1.530
C16 C15 1.398 1.396
N20 C15 1.332 1.330
C15 N14 1.377 1.387
N14 C7 1.384 1.394
C7 C8 1.389 1.387
C7 N6 1.334 1.327
C8 C9 1.404 1.388
C12 C11 1.523 1.530
C11 C13 1.521 1.530
C11 N10 1.459 1.465
N6 C5 1.328 1.317
C9 N10 1.370 1.375
C9 C4 1.418 1.410
N10 C2 1.382 1.363
C5 C4 1.389 1.394
C4 N3 1.361 1.358
C2 N3 1.303 1.301
C2 C1 1.508 1.507
C5 H1 1.080 1.079
C11 H2 1.100 1.091
C8 H3 1.080 1.080
C12 H4 1.100 1.090
C12 H5 1.100 1.089
C12 H6 1.100 1.090
C13 H7 1.100 1.091
C13 H8 1.100 1.090
C13 H9 1.100 1.091
C1 H10 1.100 1.090
C1 H11 1.100 1.090
C1 H12 1.100 1.090
N14 H13 1.000 0.970
C16 H14 1.080 1.080
C17 H15 1.080 1.081
C22 H16 1.100 1.090
C22 H17 1.100 1.089
C23 H18 1.100 1.090
C23 H19 1.100 1.090
C25 H20 1.100 1.090
C25 H21 1.100 1.090
C26 H22 1.100 1.090
C26 H23 1.100 1.090
C27 H24 1.100 1.089
C27 H25 1.100 1.090
C28 H26 1.100 1.090
C28 H27 1.100 1.090
N29 H28 1.000 1.009
N29 H29 1.000 1.009
C31 H31 1.100 1.090
C31 H32 1.100 1.090
C31 H33 1.100 1.090

Bond Angles for 4YX

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N29 C28 H26 109.1 109.5
N29 C28 H27 109.1 109.5
C28 N29 H28 109.5 111.0
C28 N29 H29 109.4 111.0
C28 C27 H24 109.3 109.5
C28 C27 H25 109.3 109.5
C23 C22 H16 110.2 109.5
C23 C22 H17 110.2 109.5
C23 C24 C27 108.4 109.5
C23 C24 C25 112.7 109.1
C24 C23 H18 109.0 109.5
C24 C23 H19 109.0 109.4
C22 N21 C26 113.8 111.2
O30 C31 H31 109.5 109.5
O30 C31 H32 109.5 109.5
O30 C31 H33 109.5 109.4
C25 C24 C27 107.5 109.5
C24 C27 H24 109.2 109.5
C24 C27 H25 109.2 109.4
C24 C25 H20 108.9 109.5
C24 C25 H21 108.9 109.5
N18 C17 H15 120.5 120.4
N18 C19 N20 120.6 121.6
C17 C16 H14 121.3 120.8
N21 C26 C25 107.0 109.5
N21 C26 H22 110.1 109.5
N21 C26 H23 110.1 109.4
C26 C25 H20 108.9 109.5
C26 C25 H21 108.9 109.5
C15 N14 H13 116.8 119.9
C8 C7 N6 121.1 121.1
C7 C8 C9 117.2 118.8
C7 C8 H3 121.4 120.6
C8 C9 N10 134.1 135.2
C9 C8 H3 121.4 120.7
C12 C11 C13 116.6 109.5
C12 C11 N10 112.9 109.5
C12 C11 H2 102.5 109.5
C13 C11 N10 116.4 109.4
C13 C11 H2 102.5 109.4
C11 C13 H7 109.5 109.5
C11 C13 H8 109.4 109.5
C11 C13 H9 109.5 109.5
C11 N10 C9 119.6 126.3
C11 N10 C2 132.6 126.3
N10 C11 H2 103.1 109.5
N6 C5 H1 119.9 119.8
C9 N10 C2 107.7 107.3
C9 C4 N3 107.7 106.8
C5 C4 N3 134.4 134.4
C2 C1 H10 109.5 109.4
C2 C1 H11 109.5 109.5
C2 C1 H12 109.5 109.5
H4 C12 H5 109.5 109.5
H4 C12 H6 109.4 109.5
H5 C12 H6 109.4 109.4
H7 C13 H8 109.5 109.5
H7 C13 H9 109.5 109.4
H8 C13 H9 109.5 109.5
H10 C1 H11 109.5 109.5
H10 C1 H12 109.4 109.5
H11 C1 H12 109.5 109.5
H16 C22 H17 109.5 109.5
H18 C23 H19 109.4 109.6
H20 C25 H21 109.5 109.5
H22 C26 H23 109.5 109.4
H24 C27 H25 109.5 109.5
H26 C28 H27 109.5 109.5
H28 N29 H29 109.5 110.9
H31 C31 H32 109.5 109.5
H31 C31 H33 109.5 109.5
H32 C31 H33 109.5 109.5

Torsion Angles for 4YX

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N29 C28 C27 H24 293.8 62.9
N29 C28 C27 H25 53.5 302.8
H26 C28 N29 H27 240.5 120.0
H28 N29 C28 H29 240.0 236.1
C24 C27 C28 H24 239.9 120.0
C24 C27 C28 H25 120.1 240.1
H24 C27 C28 H25 240.2 120.1
C23 C22 N21 C26 67.3 61.8
H16 C22 C23 H17 239.1 120.0
C24 C23 C22 H16 63.4 180.8
C24 C23 C22 H17 184.3 60.8
C25 C24 C23 C27 241.2 240.1
C23 C24 C27 H24 309.5 181.2
C23 C24 C27 H25 189.8 301.1
C23 C24 C25 H20 72.1 62.3
C23 C24 C25 H21 191.4 182.4
H18 C23 C24 H19 119.4 120.1
C22 N21 C26 C25 294.3 298.3
C22 N21 C26 H22 54.0 58.3
C22 N21 C26 H23 174.7 178.2
O30 C24 C23 H18 167.9 177.7
O30 C24 C23 H19 48.5 57.6
O30 C24 C27 H24 192.9 61.0
O30 C24 C27 H25 73.2 181.0
O30 C24 C25 H20 191.3 182.2
O30 C24 C25 H21 310.6 302.3
H31 C31 O30 H32 240.0 240.0
H31 C31 O30 H33 120.0 120.0
H32 C31 O30 H33 240.0 240.0
C28 C27 C24 H24 120.1 240.0
C28 C27 C24 H25 239.9 120.0
C23 C24 C27 C25 238.0 240.4
C27 C24 C23 H18 48.3 57.6
C27 C24 C23 H19 288.9 297.5
C27 C24 C25 H20 312.8 302.4
C27 C24 C25 H21 72.1 62.5
H24 C27 C24 H25 119.7 240.0
C23 C24 C25 C27 119.3 119.9
C25 C24 C23 H18 289.5 297.7
C25 C24 C23 H19 170.1 177.6
C25 C24 C27 H24 71.6 300.8
C25 C24 C27 H25 311.9 60.8
N21 C26 C25 C24 53.4 59.2
C26 C25 C24 H20 239.6 240.0
C26 C25 C24 H21 120.3 120.0
H20 C25 C24 H21 240.7 239.9
N18 C17 C16 H14 179.6 180.0
C19 N18 C17 H15 179.1 180.0
N21 C26 C25 H20 293.1 299.2
N21 C26 C25 H21 173.8 179.1
H22 C26 N21 H23 239.3 240.1
C26 C25 C24 C27 192.4 182.5
C24 C25 C26 H20 120.4 120.0
C24 C25 C26 H21 239.7 240.1
N21 C26 C25 H22 119.6 120.0
N21 C26 C25 H23 240.4 240.0
H20 C25 C26 H21 119.3 120.1
C16 C15 N14 H13 332.1 5.9
N20 C15 N14 H13 149.9 185.5
N14 C7 C8 H3 359.6 359.6
C7 C8 C9 N10 178.6 179.9
C9 C8 C7 H3 180.0 180.4
N6 C7 C8 C9 1.4 0.4
N6 C7 C8 H3 181.3 180.0
C7 N6 C5 H1 180.3 180.0
C9 C8 C7 N6 1.4 0.4
C7 C8 C9 H3 180.0 179.6
C11 N10 C9 C8 1.2 0.0
C8 C9 N10 C2 181.1 180.3
C8 C9 C4 N3 179.7 180.0
C13 C11 C12 N10 221.3 240.0
C13 C11 C12 H2 111.1 120.0
C12 C11 C13 H7 180.0 60.0
C12 C11 C13 H8 300.0 180.0
C12 C11 C13 H9 60.0 300.0
C12 C11 N10 C9 109.2 298.7
C12 C11 N10 C2 289.3 118.4
N10 C11 C12 H2 249.8 240.0
C12 C11 C13 N10 137.3 120.0
C12 C11 C13 H2 248.9 240.0
C13 C11 N10 C9 248.0 58.8
C13 C11 N10 C2 68.2 238.4
N10 C11 C13 H2 111.6 119.9
H7 C13 C11 H8 240.0 240.0
H7 C13 C11 H9 120.0 119.9
H8 C13 C11 H9 240.0 240.0
C8 C9 N10 C11 1.2 0.0
C12 C11 N10 C13 221.2 240.0
C12 C11 N10 H2 109.9 120.1
C13 C11 N10 H2 248.7 240.1
N10 C11 C13 H7 42.7 299.9
N10 C11 C13 H8 162.7 60.0
N10 C11 C13 H9 282.7 180.0
C9 N10 C11 C2 179.8 180.3
N10 C9 C8 H3 358.7 0.3
C11 N10 C9 C2 180.1 179.7
C9 N10 C11 H2 359.3 178.7
N10 C9 C4 N3 0.5 0.0
C5 C4 C9 N3 179.6 179.7
C11 N10 C2 C9 179.9 180.3
C2 N10 C11 H2 179.5 358.4
N10 C2 C1 H10 179.0 265.3
N10 C2 C1 H11 299.0 25.3
N10 C2 C1 H12 59.0 145.4
C9 C4 C5 N3 180.5 180.4
C11 N10 C2 N3 179.1 179.8
C9 N10 C2 N3 359.3 359.5
C11 N10 C2 C1 0.0 0.3
C9 N10 C2 C1 180.2 180.0
H10 C1 C2 H11 240.0 240.0
H10 C1 C2 H12 120.0 120.0
H11 C1 C2 H12 240.0 240.0
H1 C5 C4 N3 0.2 359.9
C12 C11 H2 C13 121.3 120.0
C12 C11 H2 N10 242.6 240.0
C13 C11 H2 N10 121.3 119.9
H2 C11 C13 H7 291.1 180.0
H2 C11 C13 H8 51.1 300.0
H2 C11 C13 H9 171.0 60.1
H2 C11 N10 C9 359.3 178.7
H2 C11 N10 C2 179.5 358.4
H3 C8 C7 N6 181.3 180.0
C7 C8 H3 C9 180.0 180.4
H3 C8 C9 N10 358.7 0.3
H4 C12 C11 C13 180.0 65.2
H4 C12 C11 N10 318.7 185.2
H4 C12 C11 H2 68.9 305.2
H5 C12 H4 H6 120.0 120.0
H5 C12 C11 C13 300.0 185.2
H5 C12 C11 N10 78.8 305.2
H5 C12 C11 H2 188.9 65.2
H4 C12 H5 H6 240.0 239.9
H6 C12 C11 C13 60.0 305.2
H6 C12 C11 N10 198.7 65.1
H6 C12 C11 H2 308.9 185.2
H4 C12 H6 H5 120.0 120.1
H7 C13 C11 N10 42.7 299.9
H7 C13 C11 H2 291.1 180.0
C11 C13 H7 H8 120.0 120.1
C11 C13 H7 H9 240.0 240.0
H8 C13 H7 H9 120.0 120.0
H8 C13 C11 N10 162.7 60.0
H8 C13 C11 H2 51.1 300.0
C11 C13 H8 H7 240.0 240.0
C11 C13 H8 H9 120.0 120.0
H7 C13 H8 H9 240.0 240.1
H9 C13 C11 N10 282.7 180.0
H9 C13 C11 H2 171.0 60.1
C11 C13 H9 H7 120.0 120.0
C11 C13 H9 H8 240.0 239.9
H7 C13 H9 H8 120.0 120.0
C2 C1 H10 H11 120.0 120.0
C2 C1 H10 H12 240.0 240.0
H11 C1 H10 H12 120.0 120.0
C2 C1 H11 H10 240.0 240.0
C2 C1 H11 H12 120.0 120.0
H10 C1 H11 H12 240.0 240.0
C2 C1 H12 H10 120.0 120.0
C2 C1 H12 H11 240.0 239.9
H10 C1 H12 H11 120.0 120.0
H15 C17 C16 H14 359.6 0.0
C23 C22 H16 H17 121.3 240.0
H16 C22 N21 C26 307.7 181.7
C23 C22 H17 H16 238.7 120.0
H17 C22 N21 C26 186.8 301.7
H18 C23 C22 H16 183.7 300.8
H18 C23 C22 H17 304.6 180.7
H18 C23 C24 C27 48.3 57.6
H18 C23 C24 C25 289.5 297.7
C24 C23 H18 H19 240.9 239.9
H19 C23 C22 H16 303.1 61.0
H19 C23 C22 H17 64.0 300.9
H19 C23 C24 C27 288.9 297.5
H19 C23 C24 C25 170.1 177.6
C24 C23 H19 H18 119.1 120.1
H20 C25 C24 C27 312.8 302.4
C24 C25 H20 H21 119.0 120.1
C26 C25 H20 H21 241.0 239.9
H21 C25 C24 C27 72.1 62.5
C24 C25 H21 H20 241.0 239.9
C26 C25 H21 H20 119.0 120.1
N21 C26 H22 C25 242.3 239.9
N21 C26 H22 H23 121.1 119.9
H22 C26 C25 H20 173.5 179.2
H22 C26 C25 H21 54.1 59.1
N21 C26 H23 C25 117.7 120.1
N21 C26 H23 H22 238.9 240.1
H23 C26 C25 H20 52.7 59.2
H23 C26 C25 H21 293.4 299.1
C28 C27 H24 H25 119.6 239.9
C24 C27 H24 H25 240.4 119.9
C28 C27 H25 H24 240.4 120.1
C24 C27 H25 H24 119.6 240.0
N29 C28 H26 H27 119.3 240.0
H26 C28 N29 H28 300.2 296.1
H26 C28 N29 H29 60.2 60.0
H26 C28 C27 H24 173.6 182.9
H26 C28 C27 H25 293.3 62.9
N29 C28 H27 H26 240.7 120.1
H27 C28 N29 H28 59.8 176.1
H27 C28 N29 H29 179.8 300.0
H27 C28 C27 H24 54.0 302.9
H27 C28 C27 H25 173.8 182.9
H28 N29 C28 H26 300.2 296.1
H28 N29 C28 H27 59.8 176.1
C28 N29 H28 H29 120.0 123.9
H29 N29 C28 H26 60.2 60.0
H29 N29 C28 H27 179.8 300.0
C28 N29 H29 H28 240.0 236.1
O30 C31 H31 H32 120.0 120.0
O30 C31 H31 H33 240.0 240.0
H32 C31 H31 H33 120.0 120.1
O30 C31 H32 H31 240.0 240.0
O30 C31 H32 H33 120.0 120.0
H31 C31 H32 H33 240.0 239.9
O30 C31 H33 H31 120.0 120.0
O30 C31 H33 H32 240.0 240.0
H31 C31 H33 H32 120.0 120.0