Atom Nomenclature for 4XO

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4XO

Atom Name (V3) Atom Name (V2)
C10 C1
C11 C2
C14 C3
C17 C4
C18 C5
C19 C6
N2 N1
N1 N2
C9 C7
N01 N3
C04 C8
N3 N4
C12 C9
N4 N5
C13 C10
C02 C11
C15 C12
C01 C13
N5 N6
N19 N7
C16 C14
N0W N8
C0X C15
C0V C16
C0Y C17
C0Z C18
C0C C19
C7 C20
C8 C21
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16