Atom Nomenclature for 4WJ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4WJ

Atom Name (V3) Atom Name (V2)
C2 C1
C3 C2
N4 N1
C6 C3
C7 C4
C8 C5
C11 C6
C12 C7
BR1 BR1
N5 N2
C9 C8
N10 N3
H13 H1
H14 H2
H15 H3
H17 H4
H16 H5
H23 H6
H22 H7
H25 H8
H24 H9
H19 H10
H18 H11
H20 H12
H21 H13