Atom Nomenclature for 4VQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4VQ

Atom Name (V3) Atom Name (V2)
CAD CAD
CAT CAT
CAK CAK
CBA CBA
CAS CAS
OAG OAG
OAF OAF
CAI CAI
CAH CAH
CAV CAV
CBB CBB
NAO NAO
CAU CAU
NAE NAE
NAN NAN
CAJ CAJ
CAX CAX
CAW CAW
CAM CAM
CAL CAL
CAY CAY
OAP OAP
CAA CAA
CBC CBC
OAR OAR
CAC CAC
CAZ CAZ
OAQ OAQ
CAB CAB
HAD1 HAD1
HAD2 HAD2
HAD3 HAD3
HAK HAK
HAI HAI
HAF HAF
HAH HAH
HAE1 HAE1
HAE2 HAE2
HAJ HAJ
HAM HAM
HAL HAL
HAA1 HAA1
HAA2 HAA2
HAA3 HAA3
HAC1 HAC1
HAC2 HAC2
HAC3 HAC3
HAB1 HAB1
HAB2 HAB2
HAB3 HAB3