PDB Chemical Component 4VA

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4VA

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
F C28 1.340 1.351
CL C18 1.727 1.736
C1 C2 1.489 1.530
C1 H1 1.100 1.090
C1 H1A 1.100 1.090
C1 H1B 1.100 1.090
C2 C3 1.526 1.530
C2 H2 1.100 1.090
C2 H2A 1.100 1.090
C3 N5 1.507 1.469
C3 C15 1.513 1.507
C3 H3 1.100 1.090
N5 C8 1.508 1.469
N5 HN5 1.000 1.009
N5 HN5A 1.000 1.009
C8 C10 1.525 1.530
C8 C11 1.522 1.530
C8 H8 1.100 1.089
C10 H10 1.100 1.090
C10 H10A 1.100 1.090
C10 H10B 1.099 1.091
C11 C12 1.500 1.507
C11 H11 1.100 1.090
C11 H11A 1.100 1.091
C12 O13 1.209 1.212
C12 N14 1.327 1.348
N14 HN14 1.000 0.970
N14 HN1A 1.000 0.970
C15 C16 1.382 1.382
C15 C28 1.395 1.384
C16 C17 1.373 1.383
C16 H16 1.080 1.080
C17 C18 1.377 1.383
C17 H17 1.080 1.080
C18 C20 1.379 1.388
C20 O21 1.366 1.359
C20 C28 1.357 1.388
O21 C22 1.374 1.359
C22 C23 1.381 1.388
C22 C27 1.390 1.387
C23 C24 1.369 1.381
C23 H23 1.080 1.080
C24 C25 1.386 1.383
C24 H24 1.080 1.080
C25 C26 1.373 1.383
C25 H25 1.080 1.080
C26 C27 1.373 1.381
C26 H26 1.079 1.080
C27 H27 1.080 1.080

Bond Angles for 4VA

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
F C28 C15 119.7 120.0
F C28 C20 119.0 120.1
CL C18 C17 118.5 120.0
CL C18 C20 121.0 120.0
C2 C1 H1 109.5 109.5
C2 C1 H1A 109.5 109.4
C2 C1 H1B 109.5 109.5
C1 C2 C3 113.5 109.5
C1 C2 H2 108.5 109.4
C1 C2 H2A 108.5 109.5
H1 C1 H1A 109.5 109.4
H1 C1 H1B 109.5 109.5
H1A C1 H1B 109.4 109.5
C3 C2 H2 108.5 109.5
C3 C2 H2A 108.5 109.5
C2 C3 N5 108.7 109.5
C2 C3 C15 112.2 109.5
C2 C3 H3 107.8 109.5
H2 C2 H2A 109.4 109.5
N5 C3 C15 112.1 109.5
N5 C3 H3 108.0 109.4
C3 N5 C8 117.3 109.5
C3 N5 HN5 107.5 109.5
C3 N5 HN5A 107.5 109.4
C15 C3 H3 107.9 109.5
C3 C15 C16 120.0 119.9
C3 C15 C28 121.4 120.0
C8 N5 HN5 107.5 109.5
C8 N5 HN5A 107.5 109.5
N5 C8 C10 110.1 109.4
N5 C8 C11 108.6 109.4
N5 C8 H8 108.5 109.5
HN5 N5 HN5A 109.5 109.4
C10 C8 C11 112.9 109.5
C10 C8 H8 108.3 109.5
C8 C10 H10 109.5 109.5
C8 C10 H10A 109.5 109.5
C8 C10 H10B 109.5 109.5
C11 C8 H8 108.3 109.5
C8 C11 C12 112.1 109.5
C8 C11 H11 108.8 109.4
C8 C11 H11A 108.8 109.5
H10 C10 H10A 109.5 109.5
H10 C10 H10B 109.5 109.4
H10A C10 H10B 109.5 109.5
C12 C11 H11 108.8 109.5
C12 C11 H11A 108.8 109.5
C11 C12 O13 120.6 120.0
C11 C12 N14 116.2 120.0
H11 C11 H11A 109.5 109.4
O13 C12 N14 123.2 120.0
C12 N14 HN14 120.0 120.0
C12 N14 HN1A 120.0 120.0
HN14 N14 HN1A 120.0 120.0
C16 C15 C28 118.6 120.1
C15 C16 C17 120.3 120.1
C15 C16 H16 119.9 120.0
C15 C28 C20 121.4 119.9
C17 C16 H16 119.9 119.9
C16 C17 C18 120.0 120.1
C16 C17 H17 120.0 120.0
C18 C17 H17 120.0 119.9
C17 C18 C20 120.6 119.9
C18 C20 O21 121.1 120.0
C18 C20 C28 119.2 119.9
O21 C20 C28 119.6 120.1
C20 O21 C22 123.5 118.0
O21 C22 C23 120.7 120.0
O21 C22 C27 119.4 120.1
C23 C22 C27 119.9 119.9
C22 C23 C24 119.8 119.9
C22 C23 H23 120.1 120.1
C22 C27 C26 120.0 120.0
C22 C27 H27 120.0 120.0
C24 C23 H23 120.1 120.0
C23 C24 C25 120.2 120.1
C23 C24 H24 119.9 120.0
C25 C24 H24 119.9 119.9
C24 C25 C26 120.2 120.1
C24 C25 H25 119.9 119.9
C26 C25 H25 119.9 119.9
C25 C26 C27 119.9 120.1
C25 C26 H26 120.1 120.0
C27 C26 H26 120.0 119.9
C26 C27 H27 120.0 120.0

Torsion Angles for 4VA

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C3 C15 C28 F 359.6 0.1
C16 C15 C28 F 179.9 179.7
C15 C28 F C20 180.6 179.6
C18 C20 C28 F 179.4 180.3
O21 C20 C28 F 1.5 359.9
C16 C17 C18 CL 180.4 179.9
CL C18 C17 H17 0.5 360.0
C17 C18 CL C20 179.1 180.1
CL C18 C20 O21 358.1 0.1
CL C18 C20 C28 180.2 179.7
H1 C1 C2 H1A 240.0 240.1
H1 C1 C2 H1B 120.0 120.1
H1A C1 C2 H1B 240.1 240.0
C3 C2 C1 H2 239.4 240.0
C3 C2 C1 H2A 120.6 120.1
C1 C2 C3 N5 162.1 63.8
C1 C2 C3 C15 286.6 183.9
C1 C2 C3 H3 45.3 303.9
H2 C2 C1 H2A 241.2 240.0
C2 C1 H1 H1A 120.0 119.9
C2 C1 H1 H1B 240.0 239.9
H1 C1 C2 C3 180.0 294.6
H1 C1 C2 H2 300.6 54.6
H1 C1 C2 H2A 59.4 174.5
H1A C1 H1 H1B 120.0 119.9
C2 C1 H1A H1 240.0 240.0
C2 C1 H1A H1B 120.0 120.1
H1A C1 C2 C3 300.0 54.5
H1A C1 C2 H2 60.6 174.5
H1A C1 C2 H2A 179.4 294.4
H1 C1 H1A H1B 240.0 240.0
C2 C1 H1B H1 120.0 120.1
C2 C1 H1B H1A 240.0 240.0
H1B C1 C2 C3 60.0 174.5
H1B C1 C2 H2 180.6 294.5
H1B C1 C2 H2A 299.4 54.4
H1 C1 H1B H1A 120.0 119.9
C3 C2 C1 H1 180.0 294.6
C3 C2 C1 H1A 300.0 54.5
C3 C2 C1 H1B 60.0 174.5
C1 C2 C3 H2 120.6 120.0
C1 C2 C3 H2A 239.4 239.9
H2 C2 C3 H2A 118.8 120.0
N5 C3 C2 C15 235.4 239.9
N5 C3 C2 H3 116.8 119.9
C2 C3 N5 C8 282.0 185.9
C2 C3 N5 HN5 43.1 306.0
C2 C3 N5 HN5A 160.9 65.9
C15 C3 C2 H3 241.4 240.0
C2 C3 C15 C16 114.7 271.5
C2 C3 C15 C28 295.0 91.1
H2 C2 C1 H1 300.6 54.6
H2 C2 C1 H1A 60.6 174.5
H2 C2 C1 H1B 180.6 294.5
C1 C2 H2 C3 236.3 240.0
C1 C2 H2 H2A 118.2 120.0
C3 C2 H2 H2A 241.9 240.0
H2 C2 C3 N5 41.5 303.9
H2 C2 C3 C15 166.0 63.9
H2 C2 C3 H3 284.6 184.0
H2A C2 C1 H1 59.4 174.5
H2A C2 C1 H1A 179.4 294.4
H2A C2 C1 H1B 299.4 54.4
C1 C2 H2A C3 123.7 120.1
C1 C2 H2A H2 241.8 240.1
C3 C2 H2A H2 118.1 120.0
H2A C2 C3 N5 282.7 183.9
H2A C2 C3 C15 47.3 303.9
H2A C2 C3 H3 165.9 64.0
N5 C3 C2 H2 41.5 303.9
N5 C3 C2 H2A 282.7 183.9
C2 C3 N5 C15 124.6 120.1
C2 C3 N5 H3 243.3 240.0
C15 C3 N5 H3 118.7 120.0
N5 C3 C15 C16 237.3 31.5
N5 C3 C15 C28 57.7 211.2
C8 N5 C3 HN5 238.9 239.9
C8 N5 C3 HN5A 121.1 120.0
C3 N5 C8 C10 170.9 62.8
C3 N5 C8 C11 294.9 182.8
C3 N5 C8 H8 52.5 302.8
HN5 N5 C3 HN5A 242.2 240.1
F C28 C15 C3 359.6 0.1
C15 C3 C2 H2 166.0 63.9
C15 C3 C2 H2A 47.3 303.9
C2 C3 C15 N5 237.3 239.9
C2 C3 C15 H3 118.5 120.0
N5 C3 C15 H3 241.2 240.1
C15 C3 N5 C8 157.4 65.8
C15 C3 N5 HN5 278.5 185.9
C15 C3 N5 HN5A 36.2 305.8
C16 C15 C3 C28 179.7 180.3
C3 C15 C16 C17 180.5 180.0
C3 C15 C16 H16 0.5 359.9
C3 C15 C28 C20 180.2 179.7
H3 C3 C2 H2 284.6 184.0
H3 C3 C2 H2A 165.9 64.0
C2 C3 H3 N5 117.3 120.0
C2 C3 H3 C15 238.7 240.0
N5 C3 H3 C15 121.4 120.0
H3 C3 N5 C8 38.6 305.8
H3 C3 N5 HN5 159.8 66.0
H3 C3 N5 HN5A 277.5 185.9
H3 C3 C15 C16 356.1 151.4
H3 C3 C15 C28 176.4 331.1
C8 N5 C3 C15 157.4 65.8
C8 N5 C3 H3 38.6 305.8
C3 N5 C8 HN5 121.1 120.1
C3 N5 C8 HN5A 238.9 240.0
HN5 N5 C8 HN5A 117.7 120.0
C10 C8 N5 C11 236.0 240.0
C10 C8 N5 H8 118.4 120.0
N5 C8 C10 H10 180.0 62.4
N5 C8 C10 H10A 300.0 182.4
N5 C8 C10 H10B 60.0 302.5
C11 C8 N5 H8 242.4 240.0
N5 C8 C11 C12 296.5 65.9
N5 C8 C11 H11 56.9 186.0
N5 C8 C11 H11A 176.1 305.9
HN5 N5 C3 C15 278.5 185.9
HN5 N5 C3 H3 159.8 66.0
C3 N5 HN5 C8 232.9 239.9
C3 N5 HN5 HN5A 116.5 119.9
C8 N5 HN5 HN5A 243.6 240.0
HN5 N5 C8 C10 49.7 302.8
HN5 N5 C8 C11 173.8 62.7
HN5 N5 C8 H8 291.4 182.7
HN5A N5 C3 C15 36.2 305.8
HN5A N5 C3 H3 277.5 185.9
C3 N5 HN5A C8 127.1 120.0
C3 N5 HN5A HN5 243.5 240.0
C8 N5 HN5A HN5 116.4 120.0
HN5A N5 C8 C10 292.0 182.8
HN5A N5 C8 C11 56.1 302.8
HN5A N5 C8 H8 173.6 62.8
C10 C8 N5 HN5 49.7 302.8
C10 C8 N5 HN5A 292.0 182.8
N5 C8 C10 C11 121.5 119.9
N5 C8 C10 H8 241.5 239.9
C11 C8 C10 H8 120.0 120.0
C10 C8 C11 C12 58.8 185.9
C10 C8 C11 H11 179.2 305.9
C10 C8 C11 H11A 298.4 65.9
H10 C10 C8 H10A 240.0 240.0
H10 C10 C8 H10B 120.0 119.9
H10A C10 C8 H10B 240.0 240.0
C11 C8 N5 HN5 173.8 62.7
C11 C8 N5 HN5A 56.1 302.8
N5 C8 C11 C10 237.6 240.1
N5 C8 C11 H8 117.7 120.0
C10 C8 C11 H8 240.1 240.0
C11 C8 C10 H10 58.5 302.4
C11 C8 C10 H10A 178.5 62.5
C11 C8 C10 H10B 298.5 182.5
C12 C11 C8 H11 239.6 239.9
C12 C11 C8 H11A 120.4 120.0
C8 C11 C12 O13 38.3 6.3
C8 C11 C12 N14 218.8 186.3
H11 C11 C8 H11A 240.8 240.1
H8 C8 N5 HN5 291.4 182.7
H8 C8 N5 HN5A 173.6 62.8
N5 C8 H8 C10 119.5 120.0
N5 C8 H8 C11 242.3 240.0
C10 C8 H8 C11 122.8 120.0
H8 C8 C10 H10 298.5 182.4
H8 C8 C10 H10A 58.5 302.5
H8 C8 C10 H10B 178.5 62.5
H8 C8 C11 C12 178.8 305.9
H8 C8 C11 H11 299.2 66.0
H8 C8 C11 H11A 58.4 185.9
H10 C10 C8 C11 58.5 302.4
H10 C10 C8 H8 298.5 182.4
C8 C10 H10 H10A 120.0 120.1
C8 C10 H10 H10B 240.0 240.0
H10A C10 H10 H10B 120.0 120.0
H10A C10 C8 C11 178.5 62.5
H10A C10 C8 H8 58.5 302.5
C8 C10 H10A H10 240.0 240.0
C8 C10 H10A H10B 120.0 120.0
H10 C10 H10A H10B 240.0 240.1
H10B C10 C8 C11 298.5 182.5
H10B C10 C8 H8 178.5 62.5
C8 C10 H10B H10 120.0 120.0
C8 C10 H10B H10A 240.0 240.0
H10 C10 H10B H10A 120.0 120.0
C12 C11 C8 H8 178.8 305.9
C8 C11 C12 H11 120.4 120.0
C8 C11 C12 H11A 239.6 240.0
H11 C11 C12 H11A 119.2 120.0
O13 C12 C11 N14 179.4 180.0
C11 C12 N14 HN14 179.4 360.0
C11 C12 N14 HN1A 359.4 180.1
H11 C11 C8 H8 299.2 66.0
C8 C11 H11 C12 237.6 240.0
C8 C11 H11 H11A 118.8 119.9
C12 C11 H11 H11A 241.2 240.0
H11 C11 C12 O13 277.9 246.3
H11 C11 C12 N14 98.5 66.3
H11A C11 C8 H8 58.4 185.9
C8 C11 H11A C12 122.4 120.0
C8 C11 H11A H11 241.2 240.1
C12 C11 H11A H11 118.8 120.1
H11A C11 C12 O13 158.7 126.3
H11A C11 C12 N14 339.2 306.3
O13 C12 C11 H11 277.9 246.3
O13 C12 C11 H11A 158.7 126.3
C11 C12 O13 N14 180.6 180.0
O13 C12 N14 HN14 360.0 180.0
O13 C12 N14 HN1A 180.0 0.1
N14 C12 C11 H11 98.5 66.3
N14 C12 C11 H11A 339.2 306.3
C11 C12 N14 O13 179.4 180.0
HN14 N14 C12 HN1A 180.0 179.9
C12 N14 HN14 HN1A 180.0 180.1
C12 N14 HN1A HN14 180.0 179.9
F C28 C15 C16 179.9 179.7
C16 C15 C3 H3 356.1 151.4
C3 C15 C16 C28 180.3 179.7
C16 C15 C28 C20 0.5 359.4
C17 C16 C15 H16 180.0 180.0
C15 C16 C17 C18 359.8 0.0
C15 C16 C17 H17 179.8 180.0
F C28 C15 C20 179.4 180.4
C28 C15 C3 H3 176.4 331.1
C3 C15 C28 C16 179.7 180.3
C28 C15 C16 C17 0.2 0.3
C28 C15 C16 H16 180.1 180.3
C18 C20 C28 C15 358.8 0.6
O21 C20 C28 C15 180.8 180.3
CL C18 C17 C16 180.4 179.9
C17 C16 C15 C28 0.2 0.3
C15 C16 C17 H16 180.0 180.0
C18 C17 C16 H17 180.0 180.0
C16 C17 C18 C20 359.5 360.0
H16 C16 C15 C28 180.1 180.3
C15 C16 H16 C17 180.0 180.0
H16 C16 C17 C18 179.9 180.0
H16 C16 C17 H17 359.8 0.0
CL C18 C17 C20 180.9 179.9
C18 C17 C16 H16 179.9 180.0
C16 C17 C18 H17 180.0 180.0
C17 C18 C20 O21 179.1 180.0
C17 C18 C20 C28 1.2 359.7
H17 C17 C16 H16 359.8 0.0
C16 C17 H17 C18 180.0 180.0
H17 C17 C18 C20 179.5 180.0
F C28 C20 C18 179.4 180.3
CL C18 C20 C17 179.0 180.1
C15 C28 C20 C18 358.8 0.6
C20 C18 C17 H17 179.5 180.0
O21 C20 C18 C28 177.9 180.3
C18 C20 O21 C22 69.7 90.0
F C28 C20 O21 1.5 359.9
C15 C28 C20 O21 180.8 180.3
C18 C20 O21 C28 182.1 179.7
C20 O21 C22 C23 13.6 180.0
C20 O21 C22 C27 193.0 359.7
F C28 C20 C15 180.6 179.6
C18 C20 C28 O21 177.9 180.3
C28 C20 O21 C22 247.6 270.3
C22 O21 C20 C28 247.6 270.3
C23 C22 O21 C27 180.6 180.3
O21 C22 C23 C24 179.6 180.0
O21 C22 C23 H23 359.6 360.0
O21 C22 C27 C26 180.8 179.7
O21 C22 C27 H27 0.8 360.0
O21 C22 C23 C27 179.4 179.8
C23 C22 C27 C26 0.2 359.5
C23 C22 C27 H27 180.2 179.7
C24 C23 C22 H23 180.0 180.1
C22 C23 C24 C25 359.6 360.0
C22 C23 C24 H24 179.6 180.0
O21 C22 C27 C23 180.6 180.2
C27 C22 C23 C24 0.2 0.3
C27 C22 C23 H23 180.2 180.2
C25 C26 C27 C22 359.7 0.5
C22 C27 C26 H26 179.7 180.3
C26 C27 C22 H27 180.0 179.7
C24 C23 C22 C27 0.2 0.3
C22 C23 C24 H23 180.0 179.9
C25 C24 C23 H24 180.0 179.9
C23 C24 C25 C26 0.3 0.0
C23 C24 C25 H25 180.3 180.0
H23 C23 C22 C27 180.2 180.2
C22 C23 H23 C24 180.0 180.1
H23 C23 C24 C25 179.6 180.0
H23 C23 C24 H24 359.6 0.1
C25 C24 C23 H23 179.6 180.0
C23 C24 C25 H24 180.0 180.1
C26 C25 C24 H25 180.0 180.0
C24 C25 C26 C27 0.1 359.7
C24 C25 C26 H26 180.1 179.9
H24 C24 C23 H23 359.6 0.1
C23 C24 H24 C25 180.0 179.9
H24 C24 C25 C26 180.2 180.0
H24 C24 C25 H25 0.3 359.9
C22 C27 C26 C25 359.7 0.5
C26 C25 C24 H24 180.2 180.0
C24 C25 C26 H25 180.0 180.0
C27 C26 C25 H26 180.0 179.8
C25 C26 C27 H27 179.7 180.3
H25 C25 C24 H24 0.3 359.9
C24 C25 H25 C26 180.0 180.0
H25 C25 C26 C27 180.1 179.8
H25 C25 C26 H26 0.1 360.0
C22 C27 C26 H27 180.0 180.3
C27 C26 C25 H25 180.1 179.8
C25 C26 C27 H26 180.0 180.2
H26 C26 C25 H25 0.1 360.0
C25 C26 H26 C27 180.0 179.8
H26 C26 C27 H27 359.7 0.1
C22 C27 H27 C26 180.0 179.7
H27 C27 C26 H26 359.7 0.1