Atom Nomenclature for 4UY

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4UY

Atom Name (V3) Atom Name (V2)
C2 C1
C3 C2
C4 C3
C5 C4
C6 C5
C7 C6
S8 S1
O9 O1
O10 O2
N11 N1
C12 C7
C13 C8
C14 C9
C15 C10
C16 C11
C17 C12
O18 O3
C19 C13
N20 N2
C21 C14
O22 O4
O23 O5
C24 C15
C25 C16
O26 O6
C27 C17
O28 O7
C29 C18
C30 C19
C31 C20
N41 N3
C42 C21
C32 C22
C33 C23
C34 C24
C35 C25
C36 C26
C37 C27
C38 C28
O39 O8
C40 C29
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42