PDB Chemical Component 4U3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4U3
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2 |
C2 |
1.382 |
1.221 |
| C2 |
N3 |
1.427 |
1.332 |
| C2 |
N1 |
1.432 |
1.346 |
| N3 |
C4 |
1.431 |
1.326 |
| C1' |
O4' |
1.418 |
1.444 |
| C1' |
N1 |
1.471 |
1.465 |
| C1' |
C2' |
1.492 |
1.545 |
| O4' |
C4' |
1.416 |
1.444 |
| N1 |
C6 |
1.427 |
1.364 |
| O3' |
C3' |
1.360 |
1.430 |
| C4 |
N4 |
1.444 |
1.376 |
| C4 |
C5 |
1.429 |
1.411 |
| C4' |
C3' |
1.472 |
1.544 |
| C4' |
C5' |
1.519 |
1.530 |
| C2' |
C3' |
1.490 |
1.545 |
| C6 |
C5 |
1.425 |
1.355 |
| C5 |
CL5 |
1.720 |
1.736 |
| C5' |
O5' |
1.374 |
1.429 |
| O5' |
P |
1.536 |
1.609 |
| OP2 |
P |
1.533 |
1.610 |
| P |
OP1 |
1.566 |
1.480 |
| C6 |
H6 |
1.080 |
1.079 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| C5' |
H5'' |
1.100 |
1.090 |
| C5' |
H5' |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H7 |
1.100 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'' |
1.100 |
1.091 |
| C1' |
H1' |
1.100 |
1.090 |
| N4 |
H41 |
1.000 |
0.969 |
| N4 |
H42 |
1.000 |
0.969 |
| P |
OP3 |
1.610 |
1.610 |
| OP3 |
HOP3 |
0.950 |
0.966 |
Bond Angles for 4U3
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N1 |
120.1 |
121.1 |
| C2 |
N3 |
C4 |
120.4 |
120.7 |
| C2 |
N1 |
C1' |
121.5 |
119.8 |
| C2 |
N1 |
C6 |
119.5 |
120.3 |
| N3 |
C4 |
N4 |
119.4 |
120.2 |
| N3 |
C4 |
C5 |
119.3 |
119.6 |
| N1 |
C1' |
H1' |
107.3 |
110.3 |
| C1' |
C2' |
H2' |
111.6 |
110.5 |
| C1' |
C2' |
H2'' |
111.6 |
110.6 |
| O4' |
C4' |
C3' |
107.8 |
104.8 |
| O4' |
C4' |
H4' |
110.2 |
110.4 |
| N1 |
C6 |
H6 |
119.8 |
120.4 |
| O3' |
C3' |
H7 |
110.8 |
110.4 |
| C5 |
C4 |
N4 |
121.3 |
120.2 |
| C4 |
N4 |
H41 |
120.0 |
120.0 |
| C4 |
N4 |
H42 |
120.0 |
120.0 |
| C4 |
C5 |
CL5 |
118.3 |
120.5 |
| C3' |
C4' |
H4' |
109.5 |
110.4 |
| C4' |
C3' |
H7 |
109.2 |
110.5 |
| C4' |
C5' |
H5'' |
109.2 |
109.4 |
| C4' |
C5' |
H5' |
109.2 |
109.4 |
| C2' |
C3' |
H7 |
108.9 |
110.5 |
| C6 |
C5 |
CL5 |
121.2 |
120.5 |
| O5' |
C5' |
H5'' |
109.3 |
109.5 |
| O5' |
C5' |
H5' |
109.2 |
109.5 |
| O5' |
P |
OP3 |
104.4 |
109.4 |
| OP2 |
P |
OP3 |
111.1 |
109.4 |
| OP1 |
P |
OP3 |
110.1 |
109.4 |
| H5'' |
C5' |
H5' |
109.5 |
109.5 |
| H2' |
C2' |
H2'' |
109.5 |
110.5 |
| H41 |
N4 |
H42 |
120.0 |
120.0 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
Torsion Angles for 4U3
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N3 |
C2 |
N1 |
C1' |
178.9 |
180.0 |
| N3 |
C2 |
N1 |
C6 |
359.4 |
0.0 |
| C2 |
N3 |
C4 |
N4 |
179.8 |
179.9 |
| C2 |
N3 |
C4 |
C5 |
0.2 |
0.0 |
| N1 |
C2 |
N3 |
C4 |
0.6 |
360.0 |
| C2 |
N1 |
C1' |
H1' |
8.9 |
175.8 |
| C2 |
N1 |
C6 |
H6 |
180.0 |
180.0 |
| C4 |
N3 |
C2 |
N1 |
0.6 |
360.0 |
| C5 |
C4 |
N3 |
N4 |
180.4 |
180.1 |
| N3 |
C4 |
N4 |
H41 |
360.0 |
0.1 |
| N3 |
C4 |
N4 |
H42 |
180.0 |
180.0 |
| N3 |
C4 |
C5 |
CL5 |
180.5 |
180.0 |
| C2 |
N1 |
C1' |
O4' |
251.8 |
53.6 |
| C1' |
O4' |
C4' |
H4' |
234.5 |
281.6 |
| C2 |
N1 |
C1' |
C6 |
180.4 |
180.1 |
| N1 |
C1' |
C2' |
H2' |
267.9 |
24.2 |
| N1 |
C1' |
C2' |
H2'' |
30.6 |
261.5 |
| C1' |
N1 |
C6 |
H6 |
0.4 |
0.1 |
| C2 |
N1 |
C1' |
C2' |
127.9 |
298.2 |
| C1' |
C2' |
C3' |
H7 |
214.8 |
241.3 |
| H2' |
C2' |
C1' |
H2'' |
237.2 |
122.7 |
| C3' |
C4' |
O4' |
H4' |
119.4 |
118.8 |
| O4' |
C4' |
C3' |
H7 |
139.4 |
94.7 |
| O4' |
C4' |
C5' |
H5'' |
124.2 |
309.5 |
| O4' |
C4' |
C5' |
H5' |
244.0 |
189.6 |
| C2 |
N1 |
C6 |
C1' |
179.6 |
179.9 |
| O3' |
C3' |
C4' |
H4' |
19.5 |
336.1 |
| C4' |
C3' |
O3' |
H7 |
240.8 |
237.4 |
| C2' |
C3' |
O3' |
H7 |
123.5 |
122.7 |
| N3 |
C4 |
N4 |
C5 |
180.4 |
180.1 |
| N4 |
C4 |
C5 |
CL5 |
0.9 |
0.1 |
| H41 |
N4 |
C4 |
H42 |
180.0 |
180.1 |
| N3 |
C4 |
C5 |
N4 |
179.6 |
179.9 |
| C5 |
C4 |
N4 |
H41 |
179.5 |
180.0 |
| C5 |
C4 |
N4 |
H42 |
359.5 |
359.9 |
| C6 |
C5 |
C4 |
CL5 |
178.6 |
179.9 |
| O4' |
C4' |
C3' |
H4' |
240.1 |
241.1 |
| O3' |
C3' |
C4' |
H7 |
120.3 |
122.5 |
| C3' |
C4' |
C5' |
H5'' |
243.0 |
65.0 |
| C3' |
C4' |
C5' |
H5' |
2.7 |
305.0 |
| C2' |
C3' |
C4' |
H7 |
242.8 |
241.3 |
| O5' |
C5' |
C4' |
H5'' |
239.9 |
120.1 |
| O5' |
C5' |
C4' |
H5' |
120.1 |
240.0 |
| H5'' |
C5' |
C4' |
H5' |
240.3 |
119.9 |
| O3' |
C3' |
C2' |
H7 |
235.5 |
237.4 |
| C2' |
C3' |
C4' |
H4' |
142.1 |
94.9 |
| C4' |
C3' |
C2' |
H7 |
117.3 |
118.7 |
| C2 |
N1 |
C6 |
C5 |
359.9 |
359.9 |
| C6 |
C5 |
C4 |
N4 |
179.6 |
180.0 |
| C4 |
C5 |
C6 |
CL5 |
181.4 |
180.1 |
| CL5 |
C5 |
C4 |
N4 |
0.9 |
0.1 |
| C4' |
C5' |
O5' |
H5'' |
120.1 |
240.0 |
| C4' |
C5' |
O5' |
H5' |
239.9 |
120.0 |
| C5' |
O5' |
P |
OP3 |
316.3 |
185.0 |
| H5'' |
C5' |
O5' |
H5' |
119.8 |
240.0 |
| OP2 |
P |
O5' |
OP3 |
242.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
118.4 |
120.0 |
| O5' |
P |
OP3 |
HOP3 |
118.7 |
180.0 |
| O5' |
P |
OP2 |
OP3 |
112.6 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
234.5 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
232.1 |
300.0 |
| O5' |
P |
OP1 |
OP3 |
245.1 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
126.0 |
120.0 |
| OP1 |
P |
OP3 |
HOP3 |
360.0 |
60.0 |
| H6 |
C6 |
C5 |
CL5 |
359.4 |
360.0 |
| HOP2 |
OP2 |
P |
OP3 |
125.5 |
299.9 |
| C4' |
C5' |
H5'' |
H5' |
119.6 |
240.1 |
| O5' |
C5' |
H5'' |
H5' |
240.4 |
120.1 |
| C4' |
C5' |
H5' |
H5'' |
240.4 |
119.9 |
| O5' |
C5' |
H5' |
H5'' |
119.6 |
239.9 |
| O4' |
C4' |
H4' |
C3' |
118.4 |
115.4 |
| H4' |
C4' |
C3' |
H7 |
259.3 |
213.6 |
| H4' |
C4' |
C5' |
H5'' |
1.4 |
187.2 |
| H4' |
C4' |
C5' |
H5' |
121.2 |
67.3 |
| H7 |
C3' |
C4' |
H4' |
259.3 |
213.6 |
| HO3' |
O3' |
C3' |
H7 |
299.2 |
302.6 |
| C1' |
C2' |
H2' |
H2'' |
123.9 |
237.3 |
| H2' |
C2' |
C3' |
H7 |
96.1 |
359.9 |
| C1' |
C2' |
H2'' |
H2' |
236.1 |
122.7 |
| H2'' |
C2' |
C3' |
H7 |
333.4 |
122.6 |
| H1' |
C1' |
C2' |
H2' |
27.0 |
146.5 |
| H1' |
C1' |
C2' |
H2'' |
149.7 |
23.8 |
| C4 |
N4 |
H41 |
H42 |
180.0 |
179.9 |
| C4 |
N4 |
H42 |
H41 |
180.0 |
180.1 |