Atom Nomenclature for 4T1

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4T1

Atom Name (V3) Atom Name (V2)
C13 C1
C18 C2
C17 C3
C15 C4
C19 C5
C20 C6
C21 C7
C22 C8
C23 C9
C27 C10
C33 C11
C1 C12
N2 N1
C3 C13
C4 C14
C5 C15
C6 C16
C7 C17
C8 C18
C9 C19
C10 C20
N11 N2
N12 N3
C14 C21
O16 O1
N24 N4
C25 C22
C26 C23
C28 C24
C29 C25
C30 C26
N31 N5
C32 C27
O34 O2
C35 C28
H44 H1
H46 H2
H45 H3
H47 H4
H48 H5
H49 H6
H50 H7
H51 H8
H52 H9
H55 H10
H60 H11
H59 H12
H36 H13
H37 H14
H38 H15
H39 H16
H40 H17
H41 H18
H43 H19
H42 H20
H53 H21
H54 H22
H56 H23
H57 H24
H58 H25
H61 H26
H62 H27