Atom Nomenclature for 4T0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4T0

Atom Name (V3) Atom Name (V2)
C13 C1
C18 C2
C17 C3
C15 C4
C21 C5
C22 C6
C23 C7
C24 C8
C11 C9
C12 C10
C34 C11
N1 N1
C2 C12
C3 C13
C4 C14
C5 C15
N6 N2
C7 C16
C8 C17
C9 C18
C10 C19
C14 C20
N16 N3
O19 O1
N20 N4
C25 C21
C26 C22
S27 S1
O28 O2
O29 O3
C30 C23
C31 C24
C32 C25
N33 N5
O35 O4
C36 C26
C37 C27
C38 C28
C39 C29
C40 C30
C41 C31
C42 C32
H56 H1
H54 H2
H59 H3
H60 H4
H52 H5
H43 H6
H44 H7
H45 H8
H47 H9
H46 H10
H49 H11
H48 H12
H50 H13
H51 H14
H53 H15
H55 H16
H57 H17
H58 H18
H61 H19
H62 H20
H64 H21
H65 H22
H63 H23
H67 H24
H68 H25
H66 H26
H69 H27
H70 H28
H71 H29
H72 H30
H73 H31
H74 H32
H77 H33
H76 H34
H75 H35