PDB Chemical Component 4SU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4SU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N1 |
C2 |
1.372 |
1.344 |
| N1 |
C6 |
1.379 |
1.371 |
| N1 |
C1' |
1.470 |
1.465 |
| C2 |
N3 |
1.370 |
1.346 |
| C2 |
O2 |
1.211 |
1.216 |
| N3 |
C4 |
1.380 |
1.347 |
| N3 |
HN3 |
1.020 |
0.970 |
| C4 |
C5 |
1.438 |
1.415 |
| C4 |
S4 |
1.288 |
1.712 |
| C5 |
C6 |
1.343 |
1.349 |
| C5 |
H5 |
1.103 |
1.080 |
| C6 |
H6 |
1.103 |
1.079 |
| C1' |
C2' |
1.526 |
1.544 |
| C1' |
O4' |
1.418 |
1.444 |
| C1' |
H1' |
1.115 |
1.090 |
| C2' |
O2' |
1.411 |
1.428 |
| C2' |
C3' |
1.522 |
1.544 |
| C2' |
H2' |
1.114 |
1.090 |
| O2' |
HO2' |
0.950 |
0.967 |
| C3' |
C4' |
1.518 |
1.545 |
| C3' |
O3' |
1.413 |
1.429 |
| C3' |
H3' |
1.115 |
1.090 |
| C4' |
O4' |
1.452 |
1.446 |
| C4' |
C5' |
1.503 |
1.529 |
| C4' |
H4' |
1.115 |
1.090 |
| O3' |
HO3' |
0.950 |
0.967 |
| C5' |
O5' |
1.424 |
1.428 |
| C5' |
H5' |
1.115 |
1.090 |
| C5' |
H5'' |
1.115 |
1.089 |
| O5' |
P |
1.586 |
1.611 |
| P |
OP1 |
1.480 |
1.479 |
| P |
OP2 |
1.481 |
1.610 |
| P |
OP3 |
1.592 |
1.610 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.966 |
Bond Angles for 4SU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C2 |
N1 |
C6 |
120.8 |
120.6 |
| C2 |
N1 |
C1' |
117.1 |
119.7 |
| N1 |
C2 |
N3 |
115.4 |
120.9 |
| N1 |
C2 |
O2 |
122.4 |
119.6 |
| C6 |
N1 |
C1' |
122.1 |
119.7 |
| N1 |
C6 |
C5 |
122.6 |
119.7 |
| N1 |
C6 |
H6 |
120.1 |
120.2 |
| N1 |
C1' |
C2' |
113.9 |
110.4 |
| N1 |
C1' |
O4' |
108.8 |
110.5 |
| N1 |
C1' |
H1' |
106.4 |
110.3 |
| N3 |
C2 |
O2 |
122.2 |
119.5 |
| C2 |
N3 |
C4 |
127.4 |
120.3 |
| C2 |
N3 |
HN3 |
115.9 |
119.8 |
| C4 |
N3 |
HN3 |
116.7 |
119.9 |
| N3 |
C4 |
C5 |
114.0 |
119.4 |
| N3 |
C4 |
S4 |
120.6 |
120.3 |
| C5 |
C4 |
S4 |
125.4 |
120.2 |
| C4 |
C5 |
C6 |
119.8 |
119.1 |
| C4 |
C5 |
H5 |
123.5 |
120.4 |
| C6 |
C5 |
H5 |
116.7 |
120.5 |
| C5 |
C6 |
H6 |
117.3 |
120.2 |
| C2' |
C1' |
O4' |
107.7 |
104.8 |
| C2' |
C1' |
H1' |
107.5 |
110.4 |
| C1' |
C2' |
O2' |
107.7 |
110.7 |
| C1' |
C2' |
C3' |
101.9 |
104.1 |
| C1' |
C2' |
H2' |
115.5 |
110.5 |
| O4' |
C1' |
H1' |
112.7 |
110.3 |
| C1' |
O4' |
C4' |
109.7 |
105.4 |
| O2' |
C2' |
C3' |
110.0 |
110.5 |
| O2' |
C2' |
H2' |
108.1 |
110.5 |
| C2' |
O2' |
HO2' |
107.7 |
106.9 |
| C3' |
C2' |
H2' |
113.4 |
110.5 |
| C2' |
C3' |
C4' |
102.7 |
104.2 |
| C2' |
C3' |
O3' |
110.4 |
110.5 |
| C2' |
C3' |
H3' |
113.1 |
110.5 |
| C4' |
C3' |
O3' |
109.1 |
110.5 |
| C4' |
C3' |
H3' |
114.3 |
110.5 |
| C3' |
C4' |
O4' |
104.5 |
104.7 |
| C3' |
C4' |
C5' |
114.2 |
110.7 |
| C3' |
C4' |
H4' |
109.7 |
110.3 |
| O3' |
C3' |
H3' |
107.2 |
110.4 |
| C3' |
O3' |
HO3' |
110.4 |
106.8 |
| O4' |
C4' |
C5' |
109.1 |
110.4 |
| O4' |
C4' |
H4' |
114.6 |
110.4 |
| C5' |
C4' |
H4' |
105.0 |
110.3 |
| C4' |
C5' |
O5' |
109.1 |
109.5 |
| C4' |
C5' |
H5' |
112.3 |
109.5 |
| C4' |
C5' |
H5'' |
112.4 |
109.5 |
| O5' |
C5' |
H5' |
112.4 |
109.4 |
| O5' |
C5' |
H5'' |
112.4 |
109.5 |
| C5' |
O5' |
P |
121.8 |
106.8 |
| H5' |
C5' |
H5'' |
98.1 |
109.5 |
| O5' |
P |
OP1 |
106.0 |
109.5 |
| O5' |
P |
OP2 |
109.6 |
109.5 |
| O5' |
P |
OP3 |
104.3 |
109.5 |
| OP1 |
P |
OP2 |
119.9 |
109.4 |
| OP1 |
P |
OP3 |
107.2 |
109.5 |
| OP2 |
P |
OP3 |
108.7 |
109.5 |
| P |
OP2 |
HOP2 |
109.6 |
106.8 |
| P |
OP3 |
HOP3 |
104.4 |
106.8 |
Torsion Angles for 4SU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
N1 |
C2 |
C1' |
180.1 |
179.7 |
| C2 |
N1 |
C6 |
C5 |
359.8 |
0.3 |
| C2 |
N1 |
C6 |
H6 |
179.7 |
180.3 |
| C2 |
N1 |
C1' |
C2' |
80.2 |
299.7 |
| C2 |
N1 |
C1' |
O4' |
200.4 |
55.2 |
| C2 |
N1 |
C1' |
H1' |
322.0 |
177.4 |
| N3 |
C2 |
N1 |
O2 |
179.9 |
179.5 |
| N1 |
C2 |
N3 |
C4 |
359.8 |
0.5 |
| N1 |
C2 |
N3 |
HN3 |
179.9 |
180.3 |
| C2 |
N1 |
C6 |
C1' |
179.9 |
180.3 |
| C6 |
N1 |
C2 |
N3 |
0.2 |
359.5 |
| C6 |
N1 |
C2 |
O2 |
180.2 |
180.0 |
| C6 |
N1 |
C1' |
C2' |
260.2 |
120.0 |
| C6 |
N1 |
C1' |
O4' |
20.3 |
235.4 |
| C6 |
N1 |
C1' |
H1' |
141.9 |
357.7 |
| C4 |
C5 |
C6 |
N1 |
0.3 |
360.0 |
| N1 |
C6 |
C5 |
H5 |
180.3 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| C2 |
N1 |
C1' |
C6 |
180.1 |
179.7 |
| C1' |
N1 |
C2 |
N3 |
180.1 |
179.8 |
| C1' |
N1 |
C2 |
O2 |
0.2 |
0.3 |
| C1' |
N1 |
C6 |
C5 |
179.8 |
180.0 |
| C1' |
N1 |
C6 |
H6 |
359.8 |
360.0 |
| C2' |
C1' |
N1 |
O4' |
239.9 |
244.5 |
| C2' |
C1' |
N1 |
H1' |
118.3 |
122.3 |
| N1 |
C1' |
C2' |
O2' |
213.0 |
261.6 |
| N1 |
C1' |
C2' |
C3' |
97.2 |
142.9 |
| N1 |
C1' |
C2' |
H2' |
333.9 |
24.3 |
| O4' |
C1' |
N1 |
H1' |
238.4 |
237.7 |
| N1 |
C1' |
O4' |
C4' |
238.1 |
200.7 |
| N3 |
C2 |
N1 |
C6 |
0.2 |
359.5 |
| N3 |
C2 |
N1 |
C1' |
180.1 |
179.8 |
| N1 |
C2 |
N3 |
O2 |
180.1 |
180.5 |
| C4 |
N3 |
C2 |
HN3 |
179.9 |
180.2 |
| C2 |
N3 |
C4 |
C5 |
0.3 |
359.8 |
| C2 |
N3 |
C4 |
S4 |
180.5 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
180.2 |
180.0 |
| O2 |
C2 |
N1 |
C1' |
0.2 |
0.3 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
179.5 |
| O2 |
C2 |
N3 |
C4 |
179.7 |
180.0 |
| O2 |
C2 |
N3 |
HN3 |
359.8 |
359.8 |
| C4 |
N3 |
C2 |
O2 |
179.7 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.1 |
179.8 |
| C5 |
C4 |
N3 |
S4 |
179.8 |
180.1 |
| N3 |
C4 |
C5 |
C6 |
359.7 |
360.0 |
| N3 |
C4 |
C5 |
H5 |
179.7 |
180.0 |
| HN3 |
N3 |
C2 |
O2 |
359.8 |
359.8 |
| C2 |
N3 |
HN3 |
C4 |
179.9 |
180.2 |
| HN3 |
N3 |
C4 |
C5 |
180.2 |
180.0 |
| HN3 |
N3 |
C4 |
S4 |
0.5 |
359.9 |
| N1 |
C6 |
C5 |
C4 |
0.3 |
360.0 |
| C5 |
C4 |
N3 |
HN3 |
180.2 |
180.0 |
| N3 |
C4 |
C5 |
S4 |
180.3 |
179.9 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
180.4 |
180.0 |
| S4 |
C4 |
N3 |
HN3 |
0.5 |
359.9 |
| N3 |
C4 |
S4 |
C5 |
179.7 |
180.1 |
| S4 |
C4 |
C5 |
C6 |
179.4 |
180.1 |
| S4 |
C4 |
C5 |
H5 |
359.4 |
0.1 |
| C5 |
C6 |
N1 |
C1' |
179.8 |
180.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
S4 |
179.4 |
180.1 |
| C4 |
C5 |
C6 |
H5 |
180.0 |
180.0 |
| H5 |
C5 |
C4 |
S4 |
359.4 |
0.1 |
| C4 |
C5 |
H5 |
C6 |
180.0 |
180.0 |
| H5 |
C5 |
C6 |
H6 |
0.4 |
360.0 |
| H6 |
C6 |
N1 |
C1' |
359.8 |
360.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
H5 |
0.4 |
360.0 |
| N1 |
C1' |
C2' |
O4' |
120.7 |
118.9 |
| N1 |
C1' |
C2' |
H1' |
242.4 |
237.7 |
| O4' |
C1' |
C2' |
H1' |
121.7 |
118.8 |
| C2' |
C1' |
O4' |
C4' |
2.0 |
319.6 |
| O2' |
C2' |
C1' |
C3' |
115.7 |
118.7 |
| O2' |
C2' |
C1' |
H2' |
239.1 |
237.3 |
| C1' |
C2' |
O2' |
HO2' |
180.1 |
183.8 |
| C3' |
C2' |
C1' |
H2' |
123.3 |
118.6 |
| C1' |
C2' |
C3' |
C4' |
34.9 |
359.9 |
| C1' |
C2' |
C3' |
O3' |
151.1 |
118.7 |
| C1' |
C2' |
C3' |
H3' |
271.2 |
241.2 |
| N1 |
C1' |
O4' |
C2' |
236.1 |
241.1 |
| N1 |
C1' |
O4' |
H1' |
117.7 |
122.3 |
| C2' |
C1' |
O4' |
H1' |
241.6 |
241.2 |
| O4' |
C1' |
C2' |
O2' |
92.2 |
142.7 |
| O4' |
C1' |
C2' |
C3' |
336.5 |
24.0 |
| O4' |
C1' |
C2' |
H2' |
213.1 |
265.4 |
| C3' |
C4' |
O4' |
C1' |
20.7 |
40.3 |
| C1' |
O4' |
C4' |
C5' |
143.2 |
159.4 |
| C1' |
O4' |
C4' |
H4' |
260.7 |
281.7 |
| N1 |
C1' |
H1' |
C2' |
122.3 |
122.3 |
| N1 |
C1' |
H1' |
O4' |
240.9 |
237.7 |
| C2' |
C1' |
H1' |
O4' |
118.5 |
115.4 |
| H1' |
C1' |
C2' |
O2' |
330.5 |
23.9 |
| H1' |
C1' |
C2' |
C3' |
214.8 |
265.2 |
| H1' |
C1' |
C2' |
H2' |
91.5 |
146.6 |
| H1' |
C1' |
O4' |
C4' |
120.4 |
78.4 |
| O2' |
C2' |
C1' |
O4' |
92.2 |
142.7 |
| O2' |
C2' |
C1' |
H1' |
330.5 |
23.9 |
| C1' |
C2' |
O2' |
C3' |
249.7 |
245.2 |
| C1' |
C2' |
O2' |
H2' |
125.4 |
122.7 |
| C3' |
C2' |
O2' |
H2' |
235.7 |
237.4 |
| O2' |
C2' |
C3' |
C4' |
280.9 |
241.1 |
| O2' |
C2' |
C3' |
O3' |
37.1 |
359.8 |
| O2' |
C2' |
C3' |
H3' |
157.2 |
122.4 |
| C3' |
C2' |
C1' |
O4' |
336.5 |
24.0 |
| C3' |
C2' |
C1' |
H1' |
214.8 |
265.2 |
| C1' |
C2' |
C3' |
O2' |
114.1 |
118.9 |
| C1' |
C2' |
C3' |
H2' |
235.3 |
241.4 |
| O2' |
C2' |
C3' |
H2' |
121.2 |
122.5 |
| C3' |
C2' |
O2' |
HO2' |
290.3 |
298.6 |
| C4' |
C3' |
C2' |
O3' |
243.8 |
241.3 |
| C4' |
C3' |
C2' |
H3' |
123.7 |
118.7 |
| C2' |
C3' |
C4' |
O4' |
325.2 |
336.2 |
| C2' |
C3' |
C4' |
C5' |
206.1 |
217.2 |
| C2' |
C3' |
C4' |
H4' |
88.5 |
94.9 |
| O3' |
C3' |
C2' |
H3' |
239.9 |
237.4 |
| C2' |
C3' |
O3' |
HO3' |
180.1 |
63.3 |
| H2' |
C2' |
C1' |
O4' |
213.1 |
265.4 |
| H2' |
C2' |
C1' |
H1' |
91.5 |
146.6 |
| C1' |
C2' |
H2' |
O2' |
239.3 |
237.2 |
| C1' |
C2' |
H2' |
C3' |
117.0 |
114.6 |
| O2' |
C2' |
H2' |
C3' |
237.7 |
237.4 |
| H2' |
C2' |
O2' |
HO2' |
54.6 |
61.1 |
| H2' |
C2' |
C3' |
C4' |
159.7 |
118.5 |
| H2' |
C2' |
C3' |
O3' |
275.9 |
237.3 |
| H2' |
C2' |
C3' |
H3' |
36.0 |
359.8 |
| HO2' |
O2' |
C2' |
C3' |
290.3 |
298.6 |
| HO2' |
O2' |
C2' |
H2' |
54.6 |
61.1 |
| C1' |
O4' |
C4' |
C3' |
20.7 |
40.3 |
| C4' |
C3' |
C2' |
H2' |
159.7 |
118.5 |
| C2' |
C3' |
C4' |
O3' |
117.2 |
118.7 |
| C2' |
C3' |
C4' |
H3' |
237.1 |
241.3 |
| O3' |
C3' |
C4' |
H3' |
119.9 |
122.5 |
| C4' |
C3' |
O3' |
HO3' |
292.2 |
178.1 |
| O4' |
C4' |
C3' |
C5' |
119.1 |
118.9 |
| O4' |
C4' |
C3' |
H4' |
236.7 |
241.3 |
| C5' |
C4' |
C3' |
H4' |
117.6 |
122.3 |
| C3' |
C4' |
C5' |
O5' |
58.6 |
176.9 |
| C3' |
C4' |
C5' |
H5' |
183.9 |
296.8 |
| C3' |
C4' |
C5' |
H5'' |
293.3 |
56.9 |
| O3' |
C3' |
C2' |
H2' |
275.9 |
237.3 |
| C2' |
C3' |
O3' |
C4' |
247.9 |
245.2 |
| C2' |
C3' |
O3' |
H3' |
123.6 |
122.6 |
| C4' |
C3' |
O3' |
H3' |
235.7 |
237.4 |
| O3' |
C3' |
C4' |
O4' |
208.1 |
217.5 |
| O3' |
C3' |
C4' |
C5' |
89.0 |
98.5 |
| O3' |
C3' |
C4' |
H4' |
331.4 |
336.2 |
| H3' |
C3' |
C2' |
H2' |
36.0 |
359.8 |
| C2' |
C3' |
H3' |
C4' |
117.0 |
114.8 |
| C2' |
C3' |
H3' |
O3' |
238.0 |
237.4 |
| C4' |
C3' |
H3' |
O3' |
121.0 |
122.6 |
| H3' |
C3' |
C4' |
O4' |
88.1 |
94.9 |
| H3' |
C3' |
C4' |
C5' |
329.0 |
336.0 |
| H3' |
C3' |
C4' |
H4' |
211.4 |
213.6 |
| H3' |
C3' |
O3' |
HO3' |
56.5 |
300.7 |
| C4' |
O4' |
C1' |
H1' |
120.4 |
78.4 |
| O4' |
C4' |
C3' |
O3' |
208.1 |
217.5 |
| O4' |
C4' |
C3' |
H3' |
88.1 |
94.9 |
| C3' |
C4' |
O4' |
C5' |
237.5 |
240.9 |
| C3' |
C4' |
O4' |
H4' |
120.0 |
118.6 |
| C5' |
C4' |
O4' |
H4' |
242.5 |
237.8 |
| O4' |
C4' |
C5' |
O5' |
302.1 |
61.5 |
| O4' |
C4' |
C5' |
H5' |
67.4 |
181.4 |
| O4' |
C4' |
C5' |
H5'' |
176.8 |
301.5 |
| C5' |
C4' |
C3' |
O3' |
89.0 |
98.5 |
| C5' |
C4' |
C3' |
H3' |
329.0 |
336.0 |
| C3' |
C4' |
C5' |
O4' |
116.5 |
115.4 |
| C3' |
C4' |
C5' |
H4' |
239.8 |
237.7 |
| O4' |
C4' |
C5' |
H4' |
123.4 |
122.3 |
| O5' |
C5' |
C4' |
H5' |
234.7 |
240.1 |
| O5' |
C5' |
C4' |
H5'' |
125.3 |
120.0 |
| C4' |
C5' |
O5' |
P |
203.3 |
180.0 |
| H5' |
C5' |
C4' |
H5'' |
250.6 |
239.9 |
| H4' |
C4' |
C3' |
O3' |
331.4 |
336.2 |
| H4' |
C4' |
C3' |
H3' |
211.4 |
213.6 |
| C3' |
C4' |
H4' |
O4' |
242.9 |
244.8 |
| C3' |
C4' |
H4' |
C5' |
123.1 |
122.6 |
| O4' |
C4' |
H4' |
C5' |
240.2 |
237.7 |
| H4' |
C4' |
C5' |
O5' |
178.8 |
299.2 |
| H4' |
C4' |
C5' |
H5' |
304.0 |
59.1 |
| H4' |
C4' |
C5' |
H5'' |
53.5 |
179.2 |
| HO3' |
O3' |
C3' |
H3' |
56.5 |
300.7 |
| O5' |
C5' |
C4' |
H4' |
178.8 |
299.2 |
| C4' |
C5' |
O5' |
H5' |
125.2 |
120.0 |
| C4' |
C5' |
O5' |
H5'' |
234.7 |
240.0 |
| H5' |
C5' |
O5' |
H5'' |
109.5 |
120.0 |
| C5' |
O5' |
P |
OP1 |
171.9 |
60.0 |
| C5' |
O5' |
P |
OP2 |
41.1 |
180.0 |
| C5' |
O5' |
P |
OP3 |
284.9 |
300.0 |
| H5' |
C5' |
C4' |
H4' |
304.0 |
59.1 |
| C4' |
C5' |
H5' |
O5' |
236.5 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
118.3 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
241.7 |
240.0 |
| H5' |
C5' |
O5' |
P |
78.0 |
60.0 |
| H5'' |
C5' |
C4' |
H4' |
53.5 |
179.2 |
| C4' |
C5' |
H5'' |
O5' |
123.5 |
120.0 |
| C4' |
C5' |
H5'' |
H5' |
241.8 |
239.9 |
| O5' |
C5' |
H5'' |
H5' |
118.3 |
119.9 |
| H5'' |
C5' |
O5' |
P |
328.6 |
300.0 |
| P |
O5' |
C5' |
H5' |
78.0 |
60.0 |
| P |
O5' |
C5' |
H5'' |
328.6 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
130.8 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
247.0 |
120.0 |
| OP2 |
P |
O5' |
OP3 |
116.2 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
180.1 |
180.0 |
| O5' |
P |
OP3 |
HOP3 |
180.0 |
300.0 |
| O5' |
P |
OP1 |
OP2 |
235.4 |
120.0 |
| O5' |
P |
OP1 |
OP3 |
111.0 |
240.0 |
| OP2 |
P |
OP1 |
OP3 |
235.6 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
57.2 |
300.0 |
| OP1 |
P |
OP3 |
HOP3 |
292.2 |
180.0 |
| O5' |
P |
OP2 |
OP1 |
122.9 |
240.0 |
| O5' |
P |
OP2 |
OP3 |
246.6 |
120.0 |
| OP1 |
P |
OP2 |
OP3 |
123.7 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
63.2 |
60.0 |
| O5' |
P |
OP3 |
OP1 |
247.8 |
120.0 |
| O5' |
P |
OP3 |
OP2 |
116.8 |
240.0 |
| OP1 |
P |
OP3 |
OP2 |
229.0 |
120.0 |
| OP3 |
P |
OP2 |
HOP2 |
293.5 |
60.0 |
| HOP2 |
OP2 |
P |
OP3 |
293.5 |
60.0 |