PDB Chemical Component 4SC
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4SC
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP1 |
1.497 |
1.480 |
P |
OP2 |
1.463 |
1.611 |
P |
O5' |
1.664 |
1.610 |
O5' |
C5' |
1.477 |
1.429 |
C5' |
C4' |
1.545 |
1.530 |
C5' |
H5' |
1.100 |
1.091 |
C5' |
H5'' |
1.100 |
1.090 |
C4' |
S4' |
1.827 |
1.841 |
C4' |
C3' |
1.528 |
1.551 |
C4' |
H4' |
1.100 |
1.089 |
S4' |
C1' |
1.825 |
1.834 |
C3' |
O3' |
1.534 |
1.429 |
C3' |
C2' |
1.587 |
1.530 |
C3' |
H3' |
1.100 |
1.090 |
O3' |
HO3' |
0.951 |
0.966 |
C2' |
C1' |
1.533 |
1.537 |
C2' |
H2' |
1.100 |
1.091 |
C2' |
H2'' |
1.100 |
1.091 |
C1' |
N1 |
1.485 |
1.466 |
C1' |
H1' |
1.100 |
1.090 |
N1 |
C2 |
1.406 |
1.346 |
N1 |
C6 |
1.385 |
1.362 |
C2 |
O2 |
1.222 |
1.220 |
C2 |
N3 |
1.391 |
1.332 |
N3 |
C4 |
1.385 |
1.327 |
C4 |
N4 |
1.392 |
1.376 |
C4 |
C5 |
1.484 |
1.410 |
N4 |
HN41 |
1.000 |
0.970 |
N4 |
HN42 |
1.000 |
0.970 |
C5 |
C6 |
1.378 |
1.354 |
C5 |
C5M |
1.600 |
1.507 |
C6 |
H61 |
1.080 |
1.081 |
C5M |
H71 |
1.100 |
1.090 |
C5M |
H72 |
1.100 |
1.090 |
C5M |
H73 |
1.100 |
1.089 |
P |
OP3 |
|
1.610 |
OP2 |
HOP2 |
0.950 |
0.967 |
OP3 |
HOP3 |
|
0.967 |
Bond Angles for 4SC
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
OP2 |
117.6 |
109.4 |
OP1 |
P |
O5' |
105.6 |
109.5 |
OP1 |
P |
OP3 |
|
109.5 |
OP2 |
P |
O5' |
106.5 |
109.4 |
OP2 |
P |
OP3 |
|
109.5 |
P |
OP2 |
HOP2 |
109.5 |
114.0 |
P |
O5' |
C5' |
121.4 |
123.0 |
O5' |
P |
OP3 |
|
109.5 |
O5' |
C5' |
C4' |
109.8 |
109.5 |
O5' |
C5' |
H5' |
109.4 |
109.4 |
O5' |
C5' |
H5'' |
109.3 |
109.5 |
C4' |
C5' |
H5' |
109.4 |
109.4 |
C4' |
C5' |
H5'' |
109.4 |
109.5 |
C5' |
C4' |
S4' |
101.7 |
111.1 |
C5' |
C4' |
C3' |
113.1 |
111.1 |
C5' |
C4' |
H4' |
112.0 |
111.1 |
H5' |
C5' |
H5'' |
109.5 |
109.4 |
S4' |
C4' |
C3' |
108.7 |
100.9 |
S4' |
C4' |
H4' |
108.4 |
111.1 |
C4' |
S4' |
C1' |
91.0 |
95.8 |
C3' |
C4' |
H4' |
112.2 |
111.2 |
C4' |
C3' |
O3' |
111.9 |
109.6 |
C4' |
C3' |
C2' |
103.0 |
109.0 |
C4' |
C3' |
H3' |
111.0 |
109.6 |
S4' |
C1' |
C2' |
110.8 |
105.0 |
S4' |
C1' |
N1 |
113.4 |
110.3 |
S4' |
C1' |
H1' |
100.6 |
110.4 |
O3' |
C3' |
C2' |
109.5 |
109.6 |
O3' |
C3' |
H3' |
110.9 |
109.6 |
C3' |
O3' |
HO3' |
109.5 |
114.0 |
C2' |
C3' |
H3' |
110.2 |
109.4 |
C3' |
C2' |
C1' |
107.9 |
112.5 |
C3' |
C2' |
H2' |
109.8 |
108.9 |
C3' |
C2' |
H2'' |
109.9 |
108.9 |
C1' |
C2' |
H2' |
109.8 |
108.9 |
C1' |
C2' |
H2'' |
109.8 |
108.9 |
C2' |
C1' |
N1 |
122.7 |
110.4 |
C2' |
C1' |
H1' |
102.6 |
110.3 |
H2' |
C2' |
H2'' |
109.5 |
108.7 |
N1 |
C1' |
H1' |
103.1 |
110.4 |
C1' |
N1 |
C2 |
116.3 |
119.8 |
C1' |
N1 |
C6 |
124.1 |
119.8 |
C2 |
N1 |
C6 |
119.6 |
120.4 |
N1 |
C2 |
O2 |
118.2 |
119.4 |
N1 |
C2 |
N3 |
119.8 |
121.1 |
N1 |
C6 |
C5 |
122.3 |
119.3 |
N1 |
C6 |
H61 |
118.9 |
120.4 |
O2 |
C2 |
N3 |
122.0 |
119.5 |
C2 |
N3 |
C4 |
122.3 |
120.7 |
N3 |
C4 |
N4 |
120.5 |
120.2 |
N3 |
C4 |
C5 |
117.4 |
119.7 |
N4 |
C4 |
C5 |
121.8 |
120.1 |
C4 |
N4 |
HN41 |
120.0 |
119.9 |
C4 |
N4 |
HN42 |
120.0 |
120.0 |
C4 |
C5 |
C6 |
118.6 |
118.9 |
C4 |
C5 |
C5M |
93.7 |
120.5 |
HN41 |
N4 |
HN42 |
120.0 |
120.0 |
C6 |
C5 |
C5M |
112.5 |
120.5 |
C5 |
C6 |
H61 |
118.9 |
120.3 |
C5 |
C5M |
H71 |
109.5 |
109.4 |
C5 |
C5M |
H72 |
109.5 |
109.5 |
C5 |
C5M |
H73 |
109.5 |
109.5 |
H71 |
C5M |
H72 |
109.4 |
109.4 |
H71 |
C5M |
H73 |
109.5 |
109.5 |
H72 |
C5M |
H73 |
109.5 |
109.5 |
P |
OP3 |
HOP3 |
|
114.0 |
Torsion Angles for 4SC
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP2 |
P |
OP1 |
O5' |
118.6 |
240.0 |
OP2 |
P |
OP1 |
OP3 |
|
120.0 |
OP1 |
P |
OP2 |
HOP2 |
0.0 |
299.9 |
OP1 |
P |
O5' |
C5' |
160.3 |
55.1 |
O5' |
P |
OP1 |
OP3 |
|
240.0 |
OP1 |
P |
OP3 |
HOP3 |
|
180.0 |
OP1 |
P |
OP2 |
O5' |
241.8 |
120.0 |
OP1 |
P |
OP2 |
OP3 |
|
240.0 |
OP2 |
P |
O5' |
C5' |
34.5 |
175.1 |
O5' |
P |
OP2 |
OP3 |
|
120.0 |
OP2 |
P |
OP3 |
HOP3 |
|
60.0 |
OP1 |
P |
O5' |
OP2 |
125.7 |
240.0 |
OP1 |
P |
O5' |
OP3 |
|
120.0 |
OP2 |
P |
O5' |
OP3 |
|
240.0 |
O5' |
P |
OP2 |
HOP2 |
118.2 |
179.9 |
P |
O5' |
C5' |
C4' |
193.8 |
180.0 |
P |
O5' |
C5' |
H5' |
313.9 |
300.0 |
P |
O5' |
C5' |
H5'' |
73.7 |
59.9 |
O5' |
P |
OP3 |
HOP3 |
|
300.0 |
C5' |
O5' |
P |
OP3 |
|
295.1 |
C4' |
C5' |
O5' |
H5' |
239.9 |
240.0 |
C4' |
C5' |
O5' |
H5'' |
120.0 |
120.1 |
O5' |
C5' |
C4' |
S4' |
60.7 |
296.4 |
O5' |
C5' |
C4' |
C3' |
177.2 |
47.9 |
O5' |
C5' |
C4' |
H4' |
305.2 |
172.2 |
H5' |
C5' |
O5' |
H5'' |
240.1 |
240.0 |
O5' |
C5' |
C4' |
H5' |
120.1 |
120.0 |
O5' |
C5' |
C4' |
H5'' |
240.0 |
239.9 |
H5' |
C5' |
C4' |
H5'' |
119.9 |
119.9 |
S4' |
C4' |
C5' |
C3' |
243.6 |
248.5 |
S4' |
C4' |
C5' |
H4' |
115.5 |
124.2 |
C5' |
C4' |
S4' |
C1' |
149.3 |
153.3 |
C3' |
C4' |
C5' |
H4' |
232.0 |
235.7 |
C5' |
C4' |
C3' |
O3' |
86.0 |
80.8 |
C5' |
C4' |
C3' |
C2' |
203.5 |
200.7 |
C5' |
C4' |
C3' |
H3' |
321.5 |
320.4 |
O5' |
C5' |
H5' |
C4' |
239.7 |
240.0 |
O5' |
C5' |
H5' |
H5'' |
119.8 |
120.0 |
C4' |
C5' |
H5' |
H5'' |
240.2 |
240.0 |
H5' |
C5' |
C4' |
S4' |
300.7 |
176.4 |
H5' |
C5' |
C4' |
C3' |
57.1 |
287.9 |
H5' |
C5' |
C4' |
H4' |
185.1 |
52.2 |
O5' |
C5' |
H5'' |
C4' |
120.3 |
120.1 |
O5' |
C5' |
H5'' |
H5' |
240.2 |
240.0 |
C4' |
C5' |
H5'' |
H5' |
119.8 |
119.9 |
H5'' |
C5' |
C4' |
S4' |
180.8 |
56.5 |
H5'' |
C5' |
C4' |
C3' |
297.2 |
168.0 |
H5'' |
C5' |
C4' |
H4' |
65.2 |
292.3 |
S4' |
C4' |
C5' |
H5' |
300.7 |
176.4 |
S4' |
C4' |
C5' |
H5'' |
180.8 |
56.5 |
C5' |
C4' |
S4' |
C3' |
119.6 |
117.9 |
C5' |
C4' |
S4' |
H4' |
241.9 |
235.8 |
C3' |
C4' |
S4' |
H4' |
122.3 |
117.9 |
S4' |
C4' |
C3' |
O3' |
198.2 |
198.6 |
S4' |
C4' |
C3' |
C2' |
315.7 |
318.6 |
S4' |
C4' |
C3' |
H3' |
73.6 |
78.3 |
C4' |
S4' |
C1' |
C2' |
355.0 |
340.2 |
C4' |
S4' |
C1' |
N1 |
212.4 |
221.4 |
C4' |
S4' |
C1' |
H1' |
103.0 |
99.1 |
C3' |
C4' |
C5' |
H5' |
57.1 |
287.9 |
C3' |
C4' |
C5' |
H5'' |
297.2 |
168.0 |
C5' |
C4' |
C3' |
S4' |
247.8 |
242.1 |
C5' |
C4' |
C3' |
H4' |
127.9 |
124.2 |
S4' |
C4' |
C3' |
H4' |
240.1 |
242.1 |
C3' |
C4' |
S4' |
C1' |
29.7 |
35.4 |
O3' |
C3' |
C4' |
C2' |
242.5 |
240.1 |
O3' |
C3' |
C4' |
H3' |
124.5 |
120.4 |
C4' |
C3' |
O3' |
HO3' |
180.0 |
180.0 |
C2' |
C3' |
C4' |
H3' |
242.0 |
240.3 |
C4' |
C3' |
C2' |
C1' |
40.0 |
30.1 |
C4' |
C3' |
C2' |
H2' |
159.8 |
150.9 |
C4' |
C3' |
C2' |
H2'' |
280.3 |
269.3 |
H4' |
C4' |
C5' |
H5' |
185.1 |
52.2 |
H4' |
C4' |
C5' |
H5'' |
65.2 |
292.3 |
C5' |
C4' |
H4' |
S4' |
111.4 |
124.2 |
C5' |
C4' |
H4' |
C3' |
231.5 |
235.7 |
S4' |
C4' |
H4' |
C3' |
120.1 |
111.5 |
H4' |
C4' |
S4' |
C1' |
267.5 |
277.4 |
H4' |
C4' |
C3' |
O3' |
318.1 |
316.5 |
H4' |
C4' |
C3' |
C2' |
75.6 |
76.5 |
H4' |
C4' |
C3' |
H3' |
193.6 |
196.2 |
C1' |
S4' |
C4' |
C3' |
29.7 |
35.4 |
C1' |
S4' |
C4' |
H4' |
267.5 |
277.4 |
C3' |
C2' |
C1' |
S4' |
340.2 |
357.2 |
S4' |
C1' |
C2' |
H2' |
220.4 |
236.4 |
S4' |
C1' |
C2' |
H2'' |
99.9 |
118.0 |
C2' |
C1' |
S4' |
N1 |
142.6 |
118.9 |
C2' |
C1' |
S4' |
H1' |
252.0 |
241.1 |
N1 |
C1' |
S4' |
H1' |
109.4 |
122.3 |
S4' |
C1' |
N1 |
C2 |
305.3 |
63.6 |
S4' |
C1' |
N1 |
C6 |
121.7 |
243.3 |
O3' |
C3' |
C4' |
H4' |
318.1 |
316.5 |
C4' |
C3' |
O3' |
C2' |
113.6 |
119.5 |
C4' |
C3' |
O3' |
H3' |
235.4 |
239.6 |
C2' |
C3' |
O3' |
H3' |
121.9 |
120.1 |
O3' |
C3' |
C2' |
C1' |
159.3 |
150.1 |
O3' |
C3' |
C2' |
H2' |
279.0 |
270.8 |
O3' |
C3' |
C2' |
H2'' |
39.5 |
29.2 |
C2' |
C3' |
C4' |
H4' |
75.6 |
76.5 |
C4' |
C3' |
C2' |
O3' |
240.8 |
240.0 |
C4' |
C3' |
C2' |
H3' |
118.5 |
119.8 |
S4' |
C1' |
C2' |
C3' |
340.2 |
357.2 |
O3' |
C3' |
C2' |
H3' |
237.7 |
239.8 |
C2' |
C3' |
O3' |
HO3' |
66.5 |
60.5 |
C1' |
C2' |
C3' |
H2' |
240.3 |
239.2 |
C1' |
C2' |
C3' |
H2'' |
119.8 |
120.8 |
C3' |
C2' |
C1' |
N1 |
118.7 |
116.0 |
C3' |
C2' |
C1' |
H1' |
233.5 |
238.3 |
H2' |
C2' |
C3' |
H2'' |
239.5 |
241.6 |
H3' |
C3' |
C4' |
H4' |
193.6 |
196.2 |
C4' |
C3' |
H3' |
O3' |
125.1 |
120.4 |
C4' |
C3' |
H3' |
C2' |
246.5 |
240.6 |
O3' |
C3' |
H3' |
C2' |
121.4 |
120.2 |
H3' |
C3' |
O3' |
HO3' |
304.6 |
300.4 |
H3' |
C3' |
C2' |
C1' |
281.5 |
270.3 |
H3' |
C3' |
C2' |
H2' |
41.3 |
31.1 |
H3' |
C3' |
C2' |
H2'' |
161.8 |
149.5 |
HO3' |
O3' |
C3' |
C2' |
66.5 |
60.5 |
HO3' |
O3' |
C3' |
H3' |
304.6 |
300.4 |
S4' |
C1' |
C2' |
N1 |
221.5 |
241.2 |
S4' |
C1' |
C2' |
H1' |
106.7 |
118.9 |
C1' |
C2' |
C3' |
H3' |
281.5 |
270.3 |
C3' |
C2' |
C1' |
H2' |
119.7 |
120.8 |
C3' |
C2' |
C1' |
H2'' |
240.2 |
239.2 |
H2' |
C2' |
C1' |
H2'' |
120.5 |
118.4 |
N1 |
C1' |
C2' |
H1' |
245.2 |
237.7 |
C2' |
C1' |
N1 |
C2 |
167.8 |
308.1 |
C2' |
C1' |
N1 |
C6 |
344.2 |
127.7 |
H2' |
C2' |
C3' |
H3' |
41.3 |
31.1 |
C3' |
C2' |
H2' |
C1' |
241.4 |
237.0 |
C3' |
C2' |
H2' |
H2'' |
120.7 |
118.5 |
C1' |
C2' |
H2' |
H2'' |
239.3 |
241.5 |
H2' |
C2' |
C1' |
N1 |
358.9 |
355.2 |
H2' |
C2' |
C1' |
H1' |
113.8 |
117.5 |
H2'' |
C2' |
C3' |
H3' |
161.8 |
149.5 |
C3' |
C2' |
H2'' |
C1' |
118.6 |
123.0 |
C3' |
C2' |
H2'' |
H2' |
239.3 |
241.5 |
C1' |
C2' |
H2'' |
H2' |
120.7 |
118.5 |
H2'' |
C2' |
C1' |
N1 |
238.5 |
236.8 |
H2'' |
C2' |
C1' |
H1' |
353.3 |
359.1 |
S4' |
C1' |
N1 |
C2' |
137.5 |
115.5 |
S4' |
C1' |
N1 |
H1' |
252.1 |
237.8 |
N1 |
C1' |
C2' |
H2' |
358.9 |
355.2 |
N1 |
C1' |
C2' |
H2'' |
238.5 |
236.8 |
C2' |
C1' |
N1 |
H1' |
114.6 |
122.2 |
C2 |
N1 |
C1' |
C6 |
183.6 |
180.3 |
C1' |
N1 |
C2 |
O2 |
353.3 |
359.9 |
C1' |
N1 |
C2 |
N3 |
175.0 |
180.0 |
C1' |
N1 |
C6 |
C5 |
184.8 |
179.8 |
C1' |
N1 |
C6 |
H61 |
4.8 |
360.0 |
S4' |
C1' |
H1' |
C2' |
245.7 |
244.5 |
S4' |
C1' |
H1' |
N1 |
117.3 |
122.2 |
H1' |
C1' |
C2' |
H2' |
113.8 |
117.5 |
H1' |
C1' |
C2' |
H2'' |
353.3 |
359.1 |
C2' |
C1' |
H1' |
N1 |
231.6 |
237.8 |
H1' |
C1' |
N1 |
C2 |
53.2 |
185.8 |
H1' |
C1' |
N1 |
C6 |
229.6 |
5.5 |
C2 |
N1 |
C1' |
H1' |
53.2 |
185.8 |
C1' |
N1 |
C2 |
C6 |
176.6 |
179.7 |
C2 |
N1 |
C6 |
C5 |
1.1 |
359.4 |
C2 |
N1 |
C6 |
H61 |
181.1 |
179.6 |
O2 |
C2 |
N1 |
N3 |
178.3 |
179.9 |
N1 |
C2 |
N3 |
C4 |
0.4 |
360.0 |
C6 |
N1 |
C1' |
H1' |
229.6 |
5.5 |
C1' |
N1 |
C6 |
C2 |
183.7 |
180.3 |
C6 |
N1 |
C2 |
O2 |
176.7 |
180.2 |
C6 |
N1 |
C2 |
N3 |
358.4 |
0.3 |
C4 |
C5 |
C6 |
N1 |
0.5 |
0.5 |
N1 |
C6 |
C5 |
C5M |
252.6 |
180.3 |
C5 |
C6 |
N1 |
H61 |
180.0 |
179.8 |
O2 |
C2 |
N1 |
C6 |
176.7 |
180.2 |
N1 |
C2 |
O2 |
N3 |
181.7 |
180.1 |
O2 |
C2 |
N3 |
C4 |
182.2 |
180.0 |
N3 |
C2 |
N1 |
C6 |
358.4 |
0.3 |
N1 |
C2 |
N3 |
O2 |
178.2 |
179.9 |
C2 |
N3 |
C4 |
N4 |
187.5 |
180.0 |
C2 |
N3 |
C4 |
C5 |
1.2 |
0.0 |
N4 |
C4 |
N3 |
C5 |
186.3 |
180.0 |
N3 |
C4 |
N4 |
HN41 |
360.0 |
0.1 |
N3 |
C4 |
N4 |
HN42 |
180.0 |
180.0 |
N3 |
C4 |
C5 |
C6 |
358.4 |
359.7 |
N3 |
C4 |
C5 |
C5M |
116.6 |
180.0 |
N3 |
C4 |
N4 |
C5 |
173.4 |
180.0 |
N4 |
C4 |
C5 |
C6 |
172.0 |
179.7 |
N4 |
C4 |
C5 |
C5M |
290.2 |
360.0 |
HN41 |
N4 |
C4 |
HN42 |
180.0 |
180.1 |
N1 |
C6 |
C5 |
C4 |
0.5 |
0.5 |
N3 |
C4 |
C5 |
N4 |
186.4 |
180.0 |
C5 |
C4 |
N4 |
HN41 |
186.5 |
180.0 |
C5 |
C4 |
N4 |
HN42 |
6.6 |
360.0 |
C6 |
C5 |
C4 |
C5M |
241.8 |
179.8 |
C4 |
C5 |
C6 |
H61 |
180.5 |
180.4 |
C4 |
C5 |
C5M |
H71 |
180.0 |
0.0 |
C4 |
C5 |
C5M |
H72 |
300.0 |
119.9 |
C4 |
C5 |
C5M |
H73 |
60.0 |
240.0 |
HN41 |
N4 |
C4 |
C5 |
186.5 |
180.0 |
C4 |
N4 |
HN41 |
HN42 |
180.0 |
179.9 |
HN42 |
N4 |
C4 |
C5 |
6.6 |
360.0 |
C4 |
N4 |
HN42 |
HN41 |
180.0 |
180.1 |
N1 |
C6 |
C5 |
H61 |
180.0 |
180.2 |
C4 |
C5 |
C6 |
C5M |
107.8 |
180.2 |
C6 |
C5 |
C5M |
H71 |
303.2 |
180.3 |
C6 |
C5 |
C5M |
H72 |
63.1 |
300.2 |
C6 |
C5 |
C5M |
H73 |
183.2 |
60.3 |
C4 |
C5 |
C5M |
C6 |
236.9 |
179.7 |
C5M |
C5 |
C6 |
H61 |
72.7 |
0.1 |
H71 |
C5M |
C5 |
H72 |
240.0 |
240.1 |
H71 |
C5M |
C5 |
H73 |
120.0 |
120.0 |
H72 |
C5M |
C5 |
H73 |
240.0 |
239.9 |
N1 |
C6 |
H61 |
C5 |
180.0 |
179.8 |
H61 |
C6 |
C5 |
C5M |
72.7 |
0.1 |
C5 |
C5M |
H71 |
H72 |
120.0 |
120.0 |
C5 |
C5M |
H71 |
H73 |
240.0 |
240.0 |
H72 |
C5M |
H71 |
H73 |
120.0 |
120.0 |
C5 |
C5M |
H72 |
H71 |
240.0 |
240.1 |
C5 |
C5M |
H72 |
H73 |
120.0 |
120.0 |
H71 |
C5M |
H72 |
H73 |
240.0 |
240.0 |
C5 |
C5M |
H73 |
H71 |
120.0 |
120.0 |
C5 |
C5M |
H73 |
H72 |
240.0 |
239.9 |
H71 |
C5M |
H73 |
H72 |
120.0 |
120.0 |
OP1 |
P |
OP3 |
OP2 |
|
120.0 |
OP1 |
P |
OP3 |
O5' |
|
239.9 |
OP2 |
P |
OP3 |
O5' |
|
120.0 |
OP3 |
P |
OP2 |
HOP2 |
|
59.9 |
OP3 |
P |
O5' |
C5' |
|
295.1 |
HOP2 |
OP2 |
P |
O5' |
118.2 |
179.9 |
HOP2 |
OP2 |
P |
OP3 |
|
59.9 |