PDB Chemical Component 4SC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4SC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.497 1.480
P OP2 1.463 1.611
P O5' 1.664 1.610
O5' C5' 1.477 1.429
C5' C4' 1.545 1.530
C5' H5' 1.100 1.091
C5' H5'' 1.100 1.090
C4' S4' 1.827 1.841
C4' C3' 1.528 1.551
C4' H4' 1.100 1.089
S4' C1' 1.825 1.834
C3' O3' 1.534 1.429
C3' C2' 1.587 1.530
C3' H3' 1.100 1.090
O3' HO3' 0.951 0.966
C2' C1' 1.533 1.537
C2' H2' 1.100 1.091
C2' H2'' 1.100 1.091
C1' N1 1.485 1.466
C1' H1' 1.100 1.090
N1 C2 1.406 1.346
N1 C6 1.385 1.362
C2 O2 1.222 1.220
C2 N3 1.391 1.332
N3 C4 1.385 1.327
C4 N4 1.392 1.376
C4 C5 1.484 1.410
N4 HN41 1.000 0.970
N4 HN42 1.000 0.970
C5 C6 1.378 1.354
C5 C5M 1.600 1.507
C6 H61 1.080 1.081
C5M H71 1.100 1.090
C5M H72 1.100 1.090
C5M H73 1.100 1.089
P OP3   1.610
OP2 HOP2 0.950 0.967
OP3 HOP3   0.967

Bond Angles for 4SC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 117.6 109.4
OP1 P O5' 105.6 109.5
OP1 P OP3   109.5
OP2 P O5' 106.5 109.4
OP2 P OP3   109.5
P OP2 HOP2 109.5 114.0
P O5' C5' 121.4 123.0
O5' P OP3   109.5
O5' C5' C4' 109.8 109.5
O5' C5' H5' 109.4 109.4
O5' C5' H5'' 109.3 109.5
C4' C5' H5' 109.4 109.4
C4' C5' H5'' 109.4 109.5
C5' C4' S4' 101.7 111.1
C5' C4' C3' 113.1 111.1
C5' C4' H4' 112.0 111.1
H5' C5' H5'' 109.5 109.4
S4' C4' C3' 108.7 100.9
S4' C4' H4' 108.4 111.1
C4' S4' C1' 91.0 95.8
C3' C4' H4' 112.2 111.2
C4' C3' O3' 111.9 109.6
C4' C3' C2' 103.0 109.0
C4' C3' H3' 111.0 109.6
S4' C1' C2' 110.8 105.0
S4' C1' N1 113.4 110.3
S4' C1' H1' 100.6 110.4
O3' C3' C2' 109.5 109.6
O3' C3' H3' 110.9 109.6
C3' O3' HO3' 109.5 114.0
C2' C3' H3' 110.2 109.4
C3' C2' C1' 107.9 112.5
C3' C2' H2' 109.8 108.9
C3' C2' H2'' 109.9 108.9
C1' C2' H2' 109.8 108.9
C1' C2' H2'' 109.8 108.9
C2' C1' N1 122.7 110.4
C2' C1' H1' 102.6 110.3
H2' C2' H2'' 109.5 108.7
N1 C1' H1' 103.1 110.4
C1' N1 C2 116.3 119.8
C1' N1 C6 124.1 119.8
C2 N1 C6 119.6 120.4
N1 C2 O2 118.2 119.4
N1 C2 N3 119.8 121.1
N1 C6 C5 122.3 119.3
N1 C6 H61 118.9 120.4
O2 C2 N3 122.0 119.5
C2 N3 C4 122.3 120.7
N3 C4 N4 120.5 120.2
N3 C4 C5 117.4 119.7
N4 C4 C5 121.8 120.1
C4 N4 HN41 120.0 119.9
C4 N4 HN42 120.0 120.0
C4 C5 C6 118.6 118.9
C4 C5 C5M 93.7 120.5
HN41 N4 HN42 120.0 120.0
C6 C5 C5M 112.5 120.5
C5 C6 H61 118.9 120.3
C5 C5M H71 109.5 109.4
C5 C5M H72 109.5 109.5
C5 C5M H73 109.5 109.5
H71 C5M H72 109.4 109.4
H71 C5M H73 109.5 109.5
H72 C5M H73 109.5 109.5
P OP3 HOP3   114.0

Torsion Angles for 4SC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 118.6 240.0
OP2 P OP1 OP3   120.0
OP1 P OP2 HOP2 0.0 299.9
OP1 P O5' C5' 160.3 55.1
O5' P OP1 OP3   240.0
OP1 P OP3 HOP3   180.0
OP1 P OP2 O5' 241.8 120.0
OP1 P OP2 OP3   240.0
OP2 P O5' C5' 34.5 175.1
O5' P OP2 OP3   120.0
OP2 P OP3 HOP3   60.0
OP1 P O5' OP2 125.7 240.0
OP1 P O5' OP3   120.0
OP2 P O5' OP3   240.0
O5' P OP2 HOP2 118.2 179.9
P O5' C5' C4' 193.8 180.0
P O5' C5' H5' 313.9 300.0
P O5' C5' H5'' 73.7 59.9
O5' P OP3 HOP3   300.0
C5' O5' P OP3   295.1
C4' C5' O5' H5' 239.9 240.0
C4' C5' O5' H5'' 120.0 120.1
O5' C5' C4' S4' 60.7 296.4
O5' C5' C4' C3' 177.2 47.9
O5' C5' C4' H4' 305.2 172.2
H5' C5' O5' H5'' 240.1 240.0
O5' C5' C4' H5' 120.1 120.0
O5' C5' C4' H5'' 240.0 239.9
H5' C5' C4' H5'' 119.9 119.9
S4' C4' C5' C3' 243.6 248.5
S4' C4' C5' H4' 115.5 124.2
C5' C4' S4' C1' 149.3 153.3
C3' C4' C5' H4' 232.0 235.7
C5' C4' C3' O3' 86.0 80.8
C5' C4' C3' C2' 203.5 200.7
C5' C4' C3' H3' 321.5 320.4
O5' C5' H5' C4' 239.7 240.0
O5' C5' H5' H5'' 119.8 120.0
C4' C5' H5' H5'' 240.2 240.0
H5' C5' C4' S4' 300.7 176.4
H5' C5' C4' C3' 57.1 287.9
H5' C5' C4' H4' 185.1 52.2
O5' C5' H5'' C4' 120.3 120.1
O5' C5' H5'' H5' 240.2 240.0
C4' C5' H5'' H5' 119.8 119.9
H5'' C5' C4' S4' 180.8 56.5
H5'' C5' C4' C3' 297.2 168.0
H5'' C5' C4' H4' 65.2 292.3
S4' C4' C5' H5' 300.7 176.4
S4' C4' C5' H5'' 180.8 56.5
C5' C4' S4' C3' 119.6 117.9
C5' C4' S4' H4' 241.9 235.8
C3' C4' S4' H4' 122.3 117.9
S4' C4' C3' O3' 198.2 198.6
S4' C4' C3' C2' 315.7 318.6
S4' C4' C3' H3' 73.6 78.3
C4' S4' C1' C2' 355.0 340.2
C4' S4' C1' N1 212.4 221.4
C4' S4' C1' H1' 103.0 99.1
C3' C4' C5' H5' 57.1 287.9
C3' C4' C5' H5'' 297.2 168.0
C5' C4' C3' S4' 247.8 242.1
C5' C4' C3' H4' 127.9 124.2
S4' C4' C3' H4' 240.1 242.1
C3' C4' S4' C1' 29.7 35.4
O3' C3' C4' C2' 242.5 240.1
O3' C3' C4' H3' 124.5 120.4
C4' C3' O3' HO3' 180.0 180.0
C2' C3' C4' H3' 242.0 240.3
C4' C3' C2' C1' 40.0 30.1
C4' C3' C2' H2' 159.8 150.9
C4' C3' C2' H2'' 280.3 269.3
H4' C4' C5' H5' 185.1 52.2
H4' C4' C5' H5'' 65.2 292.3
C5' C4' H4' S4' 111.4 124.2
C5' C4' H4' C3' 231.5 235.7
S4' C4' H4' C3' 120.1 111.5
H4' C4' S4' C1' 267.5 277.4
H4' C4' C3' O3' 318.1 316.5
H4' C4' C3' C2' 75.6 76.5
H4' C4' C3' H3' 193.6 196.2
C1' S4' C4' C3' 29.7 35.4
C1' S4' C4' H4' 267.5 277.4
C3' C2' C1' S4' 340.2 357.2
S4' C1' C2' H2' 220.4 236.4
S4' C1' C2' H2'' 99.9 118.0
C2' C1' S4' N1 142.6 118.9
C2' C1' S4' H1' 252.0 241.1
N1 C1' S4' H1' 109.4 122.3
S4' C1' N1 C2 305.3 63.6
S4' C1' N1 C6 121.7 243.3
O3' C3' C4' H4' 318.1 316.5
C4' C3' O3' C2' 113.6 119.5
C4' C3' O3' H3' 235.4 239.6
C2' C3' O3' H3' 121.9 120.1
O3' C3' C2' C1' 159.3 150.1
O3' C3' C2' H2' 279.0 270.8
O3' C3' C2' H2'' 39.5 29.2
C2' C3' C4' H4' 75.6 76.5
C4' C3' C2' O3' 240.8 240.0
C4' C3' C2' H3' 118.5 119.8
S4' C1' C2' C3' 340.2 357.2
O3' C3' C2' H3' 237.7 239.8
C2' C3' O3' HO3' 66.5 60.5
C1' C2' C3' H2' 240.3 239.2
C1' C2' C3' H2'' 119.8 120.8
C3' C2' C1' N1 118.7 116.0
C3' C2' C1' H1' 233.5 238.3
H2' C2' C3' H2'' 239.5 241.6
H3' C3' C4' H4' 193.6 196.2
C4' C3' H3' O3' 125.1 120.4
C4' C3' H3' C2' 246.5 240.6
O3' C3' H3' C2' 121.4 120.2
H3' C3' O3' HO3' 304.6 300.4
H3' C3' C2' C1' 281.5 270.3
H3' C3' C2' H2' 41.3 31.1
H3' C3' C2' H2'' 161.8 149.5
HO3' O3' C3' C2' 66.5 60.5
HO3' O3' C3' H3' 304.6 300.4
S4' C1' C2' N1 221.5 241.2
S4' C1' C2' H1' 106.7 118.9
C1' C2' C3' H3' 281.5 270.3
C3' C2' C1' H2' 119.7 120.8
C3' C2' C1' H2'' 240.2 239.2
H2' C2' C1' H2'' 120.5 118.4
N1 C1' C2' H1' 245.2 237.7
C2' C1' N1 C2 167.8 308.1
C2' C1' N1 C6 344.2 127.7
H2' C2' C3' H3' 41.3 31.1
C3' C2' H2' C1' 241.4 237.0
C3' C2' H2' H2'' 120.7 118.5
C1' C2' H2' H2'' 239.3 241.5
H2' C2' C1' N1 358.9 355.2
H2' C2' C1' H1' 113.8 117.5
H2'' C2' C3' H3' 161.8 149.5
C3' C2' H2'' C1' 118.6 123.0
C3' C2' H2'' H2' 239.3 241.5
C1' C2' H2'' H2' 120.7 118.5
H2'' C2' C1' N1 238.5 236.8
H2'' C2' C1' H1' 353.3 359.1
S4' C1' N1 C2' 137.5 115.5
S4' C1' N1 H1' 252.1 237.8
N1 C1' C2' H2' 358.9 355.2
N1 C1' C2' H2'' 238.5 236.8
C2' C1' N1 H1' 114.6 122.2
C2 N1 C1' C6 183.6 180.3
C1' N1 C2 O2 353.3 359.9
C1' N1 C2 N3 175.0 180.0
C1' N1 C6 C5 184.8 179.8
C1' N1 C6 H61 4.8 360.0
S4' C1' H1' C2' 245.7 244.5
S4' C1' H1' N1 117.3 122.2
H1' C1' C2' H2' 113.8 117.5
H1' C1' C2' H2'' 353.3 359.1
C2' C1' H1' N1 231.6 237.8
H1' C1' N1 C2 53.2 185.8
H1' C1' N1 C6 229.6 5.5
C2 N1 C1' H1' 53.2 185.8
C1' N1 C2 C6 176.6 179.7
C2 N1 C6 C5 1.1 359.4
C2 N1 C6 H61 181.1 179.6
O2 C2 N1 N3 178.3 179.9
N1 C2 N3 C4 0.4 360.0
C6 N1 C1' H1' 229.6 5.5
C1' N1 C6 C2 183.7 180.3
C6 N1 C2 O2 176.7 180.2
C6 N1 C2 N3 358.4 0.3
C4 C5 C6 N1 0.5 0.5
N1 C6 C5 C5M 252.6 180.3
C5 C6 N1 H61 180.0 179.8
O2 C2 N1 C6 176.7 180.2
N1 C2 O2 N3 181.7 180.1
O2 C2 N3 C4 182.2 180.0
N3 C2 N1 C6 358.4 0.3
N1 C2 N3 O2 178.2 179.9
C2 N3 C4 N4 187.5 180.0
C2 N3 C4 C5 1.2 0.0
N4 C4 N3 C5 186.3 180.0
N3 C4 N4 HN41 360.0 0.1
N3 C4 N4 HN42 180.0 180.0
N3 C4 C5 C6 358.4 359.7
N3 C4 C5 C5M 116.6 180.0
N3 C4 N4 C5 173.4 180.0
N4 C4 C5 C6 172.0 179.7
N4 C4 C5 C5M 290.2 360.0
HN41 N4 C4 HN42 180.0 180.1
N1 C6 C5 C4 0.5 0.5
N3 C4 C5 N4 186.4 180.0
C5 C4 N4 HN41 186.5 180.0
C5 C4 N4 HN42 6.6 360.0
C6 C5 C4 C5M 241.8 179.8
C4 C5 C6 H61 180.5 180.4
C4 C5 C5M H71 180.0 0.0
C4 C5 C5M H72 300.0 119.9
C4 C5 C5M H73 60.0 240.0
HN41 N4 C4 C5 186.5 180.0
C4 N4 HN41 HN42 180.0 179.9
HN42 N4 C4 C5 6.6 360.0
C4 N4 HN42 HN41 180.0 180.1
N1 C6 C5 H61 180.0 180.2
C4 C5 C6 C5M 107.8 180.2
C6 C5 C5M H71 303.2 180.3
C6 C5 C5M H72 63.1 300.2
C6 C5 C5M H73 183.2 60.3
C4 C5 C5M C6 236.9 179.7
C5M C5 C6 H61 72.7 0.1
H71 C5M C5 H72 240.0 240.1
H71 C5M C5 H73 120.0 120.0
H72 C5M C5 H73 240.0 239.9
N1 C6 H61 C5 180.0 179.8
H61 C6 C5 C5M 72.7 0.1
C5 C5M H71 H72 120.0 120.0
C5 C5M H71 H73 240.0 240.0
H72 C5M H71 H73 120.0 120.0
C5 C5M H72 H71 240.0 240.1
C5 C5M H72 H73 120.0 120.0
H71 C5M H72 H73 240.0 240.0
C5 C5M H73 H71 120.0 120.0
C5 C5M H73 H72 240.0 239.9
H71 C5M H73 H72 120.0 120.0
OP1 P OP3 OP2   120.0
OP1 P OP3 O5'   239.9
OP2 P OP3 O5'   120.0
OP3 P OP2 HOP2   59.9
OP3 P O5' C5'   295.1
HOP2 OP2 P O5' 118.2 179.9
HOP2 OP2 P OP3   59.9