Atom Nomenclature for 4RB

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4RB

Atom Name (V3) Atom Name (V2)
C1G C1G
C1E C1E
C1R C1R
C1Q C1Q
O1D O1D
O1B O1B
C1F C1F
C1H C1H
C1S C1S
C1U C1U
C1K C1K
N1N N1N
C1V C1V
C1J C1J
C1I C1I
N1X N1X
N1O N1O
C1T C1T
N1P N1P
C1W C1W
C1L C1L
C1A C1A
C1M C1M
O1C O1C
H1G H1G
H1E H1E
H1F H1F
H1H H1H
H1K H1K
H1J H1J
H1I H1I
HN1P HN1P
H1W H1W
H1L H1L
H1LA H1LA
H1A H1A
H1AA H1AA
H1AB H1AB
H1M H1M
H1MA H1MA
HO1C HO1C
H18 H18