PDB Chemical Component 4PH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4PH
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CB |
CA |
1.454 |
1.530 |
| N |
CA |
1.444 |
1.469 |
| CA |
C |
1.528 |
1.507 |
| CA |
HA |
1.100 |
1.091 |
| CB |
CG |
1.482 |
1.507 |
| CB |
HB2 |
1.100 |
1.090 |
| CB |
HB3 |
1.100 |
1.090 |
| CD2 |
CG |
1.567 |
1.383 |
| CG |
CD1 |
1.527 |
1.382 |
| CD2 |
CE2 |
1.482 |
1.382 |
| CD2 |
HD2 |
1.080 |
1.080 |
| CD1 |
CE1 |
1.559 |
1.382 |
| CD1 |
HD1 |
1.080 |
1.080 |
| CE2 |
CZ |
1.520 |
1.382 |
| CE2 |
HE2 |
1.079 |
1.080 |
| CZ |
CE1 |
1.552 |
1.382 |
| CE1 |
HE1 |
1.080 |
1.080 |
| CZ |
C33 |
1.538 |
1.507 |
| O |
C |
1.264 |
1.208 |
| C |
OXT |
1.382 |
1.342 |
| C33 |
H33 |
1.100 |
1.090 |
| C33 |
H33A |
1.100 |
1.090 |
| C33 |
H33B |
1.100 |
1.090 |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.010 |
| OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 4PH
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CB |
CA |
C |
117.2 |
109.5 |
| CB |
CA |
HA |
106.7 |
109.5 |
| N |
CA |
HA |
119.2 |
109.4 |
| C |
CA |
HA |
106.4 |
109.5 |
| CA |
C |
OXT |
119.1 |
120.0 |
| CG |
CB |
HB2 |
108.6 |
109.5 |
| CG |
CB |
HB3 |
108.7 |
109.5 |
| CB |
CG |
CD1 |
118.9 |
120.0 |
| HB2 |
CB |
HB3 |
110.2 |
109.5 |
| CD2 |
CG |
CD1 |
117.5 |
120.0 |
| CG |
CD1 |
CE1 |
120.6 |
120.0 |
| CG |
CD1 |
HD1 |
119.7 |
120.0 |
| CE2 |
CD2 |
HD2 |
118.4 |
120.0 |
| CD2 |
CE2 |
CZ |
119.0 |
120.0 |
| CD2 |
CE2 |
HE2 |
120.5 |
120.0 |
| CE1 |
CD1 |
HD1 |
119.7 |
120.0 |
| CD1 |
CE1 |
HE1 |
120.7 |
120.0 |
| CZ |
CE2 |
HE2 |
120.5 |
120.0 |
| CE2 |
CZ |
CE1 |
121.2 |
120.0 |
| CE2 |
CZ |
C33 |
119.7 |
120.0 |
| CZ |
CE1 |
HE1 |
120.7 |
120.0 |
| CZ |
C33 |
H33 |
109.5 |
109.5 |
| CZ |
C33 |
H33A |
109.5 |
109.5 |
| CZ |
C33 |
H33B |
109.5 |
109.5 |
| O |
C |
OXT |
116.1 |
120.0 |
| C |
OXT |
HXT |
109.5 |
117.1 |
| H33 |
C33 |
H33A |
109.4 |
109.5 |
| H33 |
C33 |
H33B |
109.4 |
109.5 |
| H33A |
C33 |
H33B |
109.5 |
109.5 |
| H |
N |
H2 |
109.4 |
111.0 |
Torsion Angles for 4PH
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N |
CA |
CB |
HA |
233.2 |
240.1 |
| C |
CA |
CB |
HA |
119.1 |
120.0 |
| CB |
CA |
C |
OXT |
250.9 |
280.0 |
| CB |
CA |
N |
HA |
118.5 |
120.0 |
| C |
CA |
N |
HA |
241.6 |
240.0 |
| N |
CA |
C |
OXT |
137.0 |
159.9 |
| CB |
CA |
C |
HA |
240.7 |
240.0 |
| N |
CA |
C |
HA |
126.8 |
119.9 |
| O |
C |
CA |
OXT |
177.7 |
180.0 |
| CA |
C |
OXT |
HXT |
177.8 |
179.9 |
| CB |
CA |
HA |
C |
125.8 |
120.0 |
| HA |
CA |
C |
OXT |
10.2 |
40.0 |
| CG |
CB |
CA |
C |
64.4 |
175.0 |
| CG |
CB |
CA |
HA |
305.3 |
55.0 |
| HB2 |
CB |
CG |
HB3 |
120.0 |
120.0 |
| CD2 |
CG |
CB |
CD1 |
179.5 |
180.2 |
| CB |
CG |
CD1 |
CE1 |
179.3 |
180.0 |
| CB |
CG |
CD1 |
HD1 |
359.4 |
359.9 |
| HB2 |
CB |
CA |
C |
184.3 |
295.0 |
| HB2 |
CB |
CA |
HA |
65.2 |
175.0 |
| CG |
CB |
HB2 |
HB3 |
241.0 |
240.0 |
| HB2 |
CB |
CG |
CD1 |
321.3 |
330.0 |
| HB3 |
CB |
CA |
C |
304.3 |
55.0 |
| HB3 |
CB |
CA |
HA |
185.2 |
295.0 |
| CG |
CB |
HB3 |
HB2 |
119.0 |
120.1 |
| HB3 |
CB |
CG |
CD1 |
201.3 |
210.0 |
| CD2 |
CG |
CB |
HB2 |
140.9 |
150.2 |
| CD2 |
CG |
CB |
HB3 |
20.9 |
30.2 |
| CB |
CG |
CD2 |
CD1 |
180.4 |
179.8 |
| CD2 |
CG |
CD1 |
CE1 |
359.8 |
359.8 |
| CD2 |
CG |
CD1 |
HD1 |
179.8 |
179.7 |
| CD1 |
CG |
CB |
HB2 |
321.3 |
330.0 |
| CD1 |
CG |
CB |
HB3 |
201.3 |
210.0 |
| CE1 |
CD1 |
CG |
HD1 |
180.0 |
180.1 |
| CG |
CD1 |
CE1 |
HE1 |
179.9 |
180.0 |
| CE2 |
CD2 |
CG |
CD1 |
0.3 |
0.3 |
| CZ |
CE2 |
CD2 |
HE2 |
180.0 |
180.0 |
| CD2 |
CE2 |
CZ |
CE1 |
359.6 |
359.8 |
| CD2 |
CE2 |
CZ |
C33 |
179.1 |
180.0 |
| HD2 |
CD2 |
CG |
CD1 |
180.2 |
180.2 |
| HD2 |
CD2 |
CE2 |
CZ |
180.1 |
180.0 |
| HD2 |
CD2 |
CE2 |
HE2 |
0.1 |
0.0 |
| CG |
CD1 |
CE1 |
HD1 |
180.0 |
179.9 |
| CE2 |
CZ |
CE1 |
CD1 |
0.4 |
0.3 |
| CZ |
CE1 |
CD1 |
HE1 |
180.0 |
179.9 |
| CG |
CD1 |
HD1 |
CE1 |
180.0 |
180.1 |
| HD1 |
CD1 |
CE1 |
HE1 |
359.9 |
0.1 |
| CZ |
CE2 |
CD2 |
HD2 |
180.1 |
180.0 |
| CD2 |
CE2 |
CZ |
HE2 |
180.0 |
180.0 |
| CE2 |
CZ |
CE1 |
HE1 |
180.4 |
180.2 |
| CE2 |
CZ |
C33 |
H33 |
90.3 |
90.0 |
| CE2 |
CZ |
C33 |
H33A |
210.3 |
210.0 |
| CE2 |
CZ |
C33 |
H33B |
330.3 |
330.0 |
| HE2 |
CE2 |
CD2 |
HD2 |
0.1 |
0.0 |
| CD2 |
CE2 |
HE2 |
CZ |
180.0 |
180.0 |
| HE2 |
CE2 |
CZ |
CE1 |
179.6 |
179.7 |
| HE2 |
CE2 |
CZ |
C33 |
359.1 |
0.0 |
| CZ |
CE1 |
CD1 |
HD1 |
179.9 |
180.0 |
| CD1 |
CE1 |
CZ |
HE1 |
180.0 |
180.1 |
| CE1 |
CZ |
CE2 |
HE2 |
179.6 |
179.7 |
| CE2 |
CZ |
CE1 |
C33 |
179.4 |
180.3 |
| HE1 |
CE1 |
CD1 |
HD1 |
359.9 |
0.1 |
| C33 |
CZ |
CE2 |
HE2 |
359.1 |
0.0 |
| CE2 |
CZ |
C33 |
CE1 |
180.6 |
179.7 |
| C33 |
CZ |
CE1 |
HE1 |
0.9 |
360.0 |
| H33 |
C33 |
CZ |
H33A |
240.0 |
240.0 |
| H33 |
C33 |
CZ |
H33B |
120.0 |
120.0 |
| H33A |
C33 |
CZ |
H33B |
240.0 |
240.0 |
| O |
C |
CA |
HA |
187.9 |
220.0 |
| CA |
C |
O |
OXT |
182.3 |
180.0 |
| O |
C |
OXT |
HXT |
360.0 |
359.9 |
| OXT |
C |
CA |
HA |
10.2 |
40.0 |
| CZ |
C33 |
H33 |
H33A |
120.0 |
120.0 |
| CZ |
C33 |
H33 |
H33B |
240.0 |
240.0 |
| H33A |
C33 |
H33 |
H33B |
120.0 |
120.0 |
| CZ |
C33 |
H33A |
H33 |
239.9 |
240.0 |
| CZ |
C33 |
H33A |
H33B |
120.0 |
120.0 |
| H33 |
C33 |
H33A |
H33B |
240.1 |
240.0 |
| CZ |
C33 |
H33B |
H33 |
120.0 |
120.0 |
| CZ |
C33 |
H33B |
H33A |
240.0 |
240.0 |
| H33 |
C33 |
H33B |
H33A |
119.9 |
120.0 |
| H |
N |
CA |
HA |
61.5 |
56.1 |
| H2 |
N |
CA |
HA |
181.5 |
180.0 |