PDB Chemical Component 4PE

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4PE

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.509 1.500
P OP2 1.509 1.617
P O5' 1.630 1.618
P OP3   1.618
OP2 HOP2 0.950 0.981
O5' C5' 1.421 1.418
C5' C4' 1.541 1.523
C5' H5' 1.100 1.092
C5' H5'' 1.100 1.092
C4' O4' 1.453 1.441
C4' C3' 1.536 1.522
C4' H4' 1.100 1.095
O4' C1' 1.444 1.434
C3' O3' 1.436 1.426
C3' C2' 1.510 1.511
C3' H3' 1.100 1.094
O3' HO3' 0.950 0.973
C2' C1' 1.521 1.520
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.094
C1' N1 1.466 1.434
C1' H1' 1.100 1.096
N1 C2 1.385 1.400
N1 C6 1.394 1.389
C2 O2 1.341 1.361
C2 N3 1.293 1.304
O2 H2 0.950 0.969
N3 C4 1.362 1.370
C5 C6 1.331 1.331
C5 C14 1.421 1.420
C5 C4 1.473 1.475
C6 H6 1.080 1.083
C14 C15 1.349 1.349
C14 H14 1.080 1.076
C15 C16 1.490 1.488
C15 N17 1.401 1.398
C16 H161 1.100 1.091
C16 H162 1.100 1.092
C16 H163 1.100 1.092
N17 C4 1.309 1.307
OP3 HOP3   0.981

Bond Angles for 4PE

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 121.1 115.3
OP1 P O5' 108.2 115.1
OP1 P OP3   115.0
OP2 P O5' 109.8 103.7
OP2 P OP3   103.2
P OP2 HOP2 109.5 118.9
O5' P OP3   102.9
P O5' C5' 117.1 118.5
P OP3 HOP3   119.0
O5' C5' C4' 113.5 108.9
O5' C5' H5' 107.2 109.0
O5' C5' H5'' 108.1 109.0
C4' C5' H5' 107.3 110.3
C4' C5' H5'' 108.2 110.3
C5' C4' O4' 108.8 107.9
C5' C4' C3' 116.0 112.9
C5' C4' H4' 104.7 109.5
H5' C5' H5'' 112.6 109.4
O4' C4' C3' 107.2 106.2
O4' C4' H4' 114.0 107.9
C4' O4' C1' 107.3 109.3
C3' C4' H4' 106.4 112.2
C4' C3' O3' 109.3 109.9
C4' C3' C2' 102.6 103.1
C4' C3' H3' 113.1 113.4
O4' C1' C2' 106.2 107.4
O4' C1' N1 111.5 109.3
O4' C1' H1' 111.4 107.3
O3' C3' C2' 106.8 109.7
O3' C3' H3' 109.3 107.4
C3' O3' HO3' 109.5 107.3
C2' C3' H3' 115.4 113.3
C3' C2' C1' 100.9 102.5
C3' C2' H2' 114.2 109.8
C3' C2' H2'' 112.4 114.0
C1' C2' H2' 114.2 110.6
C1' C2' H2'' 112.4 111.7
C2' C1' N1 112.3 112.8
C2' C1' H1' 110.5 110.5
H2' C2' H2'' 103.1 108.3
N1 C1' H1' 105.1 109.4
C1' N1 C2 121.2 123.1
C1' N1 C6 121.9 119.9
C2 N1 C6 116.9 117.0
N1 C2 O2 116.2 116.8
N1 C2 N3 128.3 126.8
N1 C6 C5 119.7 120.5
N1 C6 H6 120.1 116.4
O2 C2 N3 115.5 116.4
C2 O2 H2 109.5 110.9
C2 N3 C4 114.6 116.1
N3 C4 C5 122.0 120.8
N3 C4 N17 125.6 127.0
C6 C5 C14 137.7 137.1
C6 C5 C4 118.3 118.8
C5 C6 H6 120.1 123.2
C14 C5 C4 104.0 104.1
C5 C14 C15 105.0 104.9
C5 C14 H14 127.5 127.1
C5 C4 N17 112.3 112.1
C15 C14 H14 127.5 128.0
C14 C15 C16 125.9 125.9
C14 C15 N17 115.1 115.1
C16 C15 N17 119.0 119.0
C15 C16 H161 109.5 110.1
C15 C16 H162 109.4 110.1
C15 C16 H163 109.5 110.1
C15 N17 C4 103.6 103.8
H161 C16 H162 109.5 109.0
H161 C16 H163 109.4 109.0
H162 C16 H163 109.4 108.5

Torsion Angles for 4PE

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 127.9 120.7
OP2 P OP1 OP3   240.0
OP1 P OP2 HOP2 265.5 48.7
O5' P OP1 OP3   119.3
OP1 P O5' C5' 164.5 180.0
OP1 P OP3 HOP3   312.1
OP1 P OP2 O5' 232.8 233.3
OP1 P OP2 OP3   126.2
O5' P OP2 OP3   253.0
OP2 P O5' C5' 30.4 53.1
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 134.1 126.9
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.3
O5' P OP2 HOP2 32.7 175.5
O5' P OP3 HOP3   186.2
P O5' C5' C4' 173.6 180.0
P O5' C5' H5' 55.3 300.4
P O5' C5' H5'' 293.6 59.7
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.9
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 32.7 175.5
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 118.3 239.6
C4' C5' O5' H5'' 240.0 120.3
O5' C5' C4' O4' 298.1 62.4
O5' C5' C4' C3' 59.0 179.5
O5' C5' C4' H4' 175.9 305.3
H5' C5' O5' H5'' 121.7 240.7
O5' C5' C4' H5' 241.7 119.6
O5' C5' C4' H5'' 120.0 240.5
H5' C5' C4' H5'' 238.2 120.9
O4' C4' C5' C3' 239.1 242.9
O4' C4' C5' H4' 122.2 117.2
C5' C4' O4' C1' 126.1 108.6
C3' C4' C5' H4' 243.1 234.3
C5' C4' C3' O3' 149.3 154.2
C5' C4' C3' C2' 262.3 271.2
C5' C4' C3' H3' 27.2 34.0
O5' C5' H5' C4' 122.2 240.5
O5' C5' H5' H5'' 241.1 119.1
C4' C5' H5' H5'' 118.9 238.5
H5' C5' C4' O4' 56.4 302.9
H5' C5' C4' C3' 177.2 60.0
H5' C5' C4' H4' 294.2 185.7
O5' C5' H5'' C4' 236.7 119.4
O5' C5' H5'' H5' 118.3 240.9
C4' C5' H5'' H5' 241.6 121.5
H5'' C5' C4' O4' 178.1 181.9
H5'' C5' C4' C3' 299.0 299.0
H5'' C5' C4' H4' 55.9 64.8
O4' C4' C5' H5' 56.4 302.9
O4' C4' C5' H5'' 178.1 181.9
C5' C4' O4' C3' 126.1 121.4
C5' C4' O4' H4' 243.6 241.8
C3' C4' O4' H4' 117.4 120.5
O4' C4' C3' O3' 270.9 272.3
O4' C4' C3' C2' 24.0 29.2
O4' C4' C3' H3' 148.9 152.1
C4' O4' C1' C2' 335.9 351.0
C4' O4' C1' N1 213.3 228.3
C4' O4' C1' H1' 96.2 109.8
C3' C4' C5' H5' 177.2 60.0
C3' C4' C5' H5'' 299.0 299.0
C5' C4' C3' O4' 238.3 241.9
C5' C4' C3' H4' 116.0 124.3
O4' C4' C3' H4' 237.7 242.3
C3' C4' O4' C1' 359.9 347.3
O3' C3' C4' C2' 246.9 243.1
O3' C3' C4' H3' 122.0 120.2
C4' C3' O3' HO3' 352.2 294.1
C2' C3' C4' H3' 235.1 237.1
C4' C3' C2' C1' 323.2 326.6
C4' C3' C2' H2' 200.2 84.1
C4' C3' C2' H2'' 83.2 205.8
H4' C4' C5' H5' 294.2 185.7
H4' C4' C5' H5'' 55.9 64.8
C5' C4' H4' O4' 118.7 117.2
C5' C4' H4' C3' 236.6 233.8
O4' C4' H4' C3' 117.9 116.7
H4' C4' O4' C1' 242.5 226.8
H4' C4' C3' O3' 33.2 30.0
H4' C4' C3' C2' 146.3 146.9
H4' C4' C3' H3' 271.2 269.8
C1' O4' C4' C3' 359.9 347.3
C1' O4' C4' H4' 242.5 226.8
C3' C2' C1' O4' 38.5 26.9
O4' C1' C2' H2' 161.5 270.0
O4' C1' C2' H2'' 278.5 149.3
C2' C1' O4' N1 122.6 122.7
C2' C1' O4' H1' 239.7 241.2
N1 C1' O4' H1' 117.1 118.5
O4' C1' N1 C2 223.0 212.9
O4' C1' N1 C6 43.3 32.8
O3' C3' C4' H4' 33.2 30.0
C4' C3' O3' C2' 110.3 112.7
C4' C3' O3' H3' 235.7 236.2
C2' C3' O3' H3' 125.5 123.5
O3' C3' C2' C1' 78.0 83.6
O3' C3' C2' H2' 315.1 201.2
O3' C3' C2' H2'' 198.0 322.8
C2' C3' C4' H4' 146.3 146.9
C4' C3' C2' O3' 245.1 242.9
C4' C3' C2' H3' 123.4 123.0
O4' C1' C2' C3' 38.5 26.9
O3' C3' C2' H3' 238.3 240.0
C2' C3' O3' HO3' 241.9 181.4
C1' C2' C3' H2' 123.0 242.5
C1' C2' C3' H2'' 240.0 120.8
C3' C2' C1' N1 160.6 147.4
C3' C2' C1' H1' 277.6 270.2
H2' C2' C3' H2'' 117.0 238.4
H3' C3' C4' H4' 271.2 269.8
C4' C3' H3' O3' 122.0 121.6
C4' C3' H3' C2' 242.3 242.9
O3' C3' H3' C2' 120.3 121.3
H3' C3' O3' HO3' 116.5 57.9
H3' C3' C2' C1' 199.7 203.6
H3' C3' C2' H2' 76.8 321.2
H3' C3' C2' H2'' 319.7 82.8
HO3' O3' C3' C2' 241.9 181.4
HO3' O3' C3' H3' 116.5 57.9
O4' C1' C2' N1 237.9 239.5
O4' C1' C2' H1' 120.9 116.7
C1' C2' C3' H3' 199.7 203.6
C3' C2' C1' H2' 237.0 117.0
C3' C2' C1' H2'' 120.0 237.6
H2' C2' C1' H2'' 243.0 120.7
N1 C1' C2' H1' 243.0 237.2
C2' C1' N1 C2 103.9 93.5
C2' C1' N1 C6 284.2 273.4
H2' C2' C3' H3' 76.8 321.2
C3' C2' H2' C1' 115.4 247.7
C3' C2' H2' H2'' 237.7 125.0
C1' C2' H2' H2'' 122.3 237.3
H2' C2' C1' N1 283.6 30.5
H2' C2' C1' H1' 40.6 153.2
H2'' C2' C3' H3' 319.7 82.8
C3' C2' H2'' C1' 246.9 115.5
C3' C2' H2'' H2' 123.5 237.5
C1' C2' H2'' H2' 236.5 122.0
H2'' C2' C1' N1 40.6 269.8
H2'' C2' C1' H1' 157.6 32.6
O4' C1' N1 C2' 119.1 119.4
O4' C1' N1 H1' 239.2 242.8
N1 C1' C2' H2' 283.6 30.5
N1 C1' C2' H2'' 40.6 269.8
C2' C1' N1 H1' 120.2 123.4
C2 N1 C1' C6 179.7 180.1
C1' N1 C2 O2 356.8 0.1
C1' N1 C2 N3 177.6 180.0
C1' N1 C6 C5 181.4 180.0
C1' N1 C6 H6 1.4 0.0
O4' C1' H1' C2' 242.2 243.2
O4' C1' H1' N1 120.8 118.5
H1' C1' C2' H2' 40.6 153.2
H1' C1' C2' H2'' 157.6 32.6
C2' C1' H1' N1 238.6 235.3
H1' C1' N1 C2 343.8 330.1
H1' C1' N1 C6 164.1 150.0
C2 N1 C1' H1' 343.8 330.1
C1' N1 C2 C6 180.3 179.9
C2 N1 C6 C5 1.7 359.9
C2 N1 C6 H6 181.7 179.9
O2 C2 N1 N3 179.2 180.0
N1 C2 O2 H2 73.9 327.9
N1 C2 N3 C4 0.5 359.9
C6 N1 C1' H1' 164.1 150.0
C1' N1 C6 C2 179.7 180.1
C6 N1 C2 O2 176.5 180.1
C6 N1 C2 N3 357.3 0.1
N1 C6 C5 C14 179.8 180.0
N1 C6 C5 C4 0.9 0.0
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 176.5 180.1
N1 C2 O2 N3 180.7 180.0
O2 C2 N3 C4 181.3 179.9
N3 C2 N1 C6 357.3 0.1
N1 C2 N3 O2 179.2 180.0
N3 C2 O2 H2 253.2 147.9
C2 N3 C4 C5 2.4 360.0
C2 N3 C4 N17 181.5 180.1
H2 O2 C2 N3 253.2 147.9
C6 C5 C4 N3 356.8 0.1
C14 C5 C4 N3 177.6 180.0
C5 C4 N3 N17 180.9 179.9
C15 N17 C4 N3 182.1 179.9
N1 C6 C5 H6 180.0 180.0
N3 C4 C5 C6 356.8 0.1
C14 C5 C6 C4 179.0 180.0
C6 C5 C14 C15 182.1 180.0
C6 C5 C14 H14 2.1 360.0
C6 C5 C4 N17 177.7 180.0
N3 C4 C5 C14 177.6 180.0
C6 C5 C14 C4 181.0 180.0
C14 C5 C6 H6 359.9 360.0
C14 C5 C4 N17 358.4 360.0
C15 C14 C5 H14 180.0 180.0
C5 C14 C15 C16 180.7 180.0
C5 C14 C15 N17 359.5 0.0
N3 C4 C5 N17 179.2 180.1
C6 C5 C4 C14 179.3 180.0
C4 C5 C6 H6 180.9 180.0
C4 C5 C14 C15 1.2 0.0
C4 C5 C14 H14 181.2 180.0
C15 N17 C4 C5 1.3 0.0
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C14 359.9 360.0
H6 C6 C5 C4 180.9 180.0
C15 C14 C5 C4 1.2 0.0
C5 C14 C15 H14 180.0 180.0
C16 C15 C14 N17 181.2 180.0
C14 C15 C16 H161 345.4 303.4
C14 C15 C16 H162 225.4 183.2
C14 C15 C16 H163 105.4 63.6
C14 C15 N17 C4 359.5 360.0
H14 C14 C5 C4 181.2 180.0
C5 C14 H14 C15 180.0 180.0
H14 C14 C15 C16 0.7 0.1
H14 C14 C15 N17 179.5 180.0
C16 C15 C14 H14 0.7 0.1
C14 C15 C16 N17 178.7 180.0
C16 C15 N17 C4 178.4 179.9
H161 C16 C15 H162 120.0 120.2
H161 C16 C15 H163 240.0 239.8
H162 C16 C15 H163 120.0 119.6
N3 C4 N17 C15 182.1 179.9
C5 C4 N17 C15 1.3 0.0
N17 C15 C14 H14 179.5 180.0
C14 C15 N17 C16 181.1 180.0
N17 C15 C16 H161 166.6 123.5
N17 C15 C16 H162 46.6 3.3
N17 C15 C16 H163 286.6 243.7
H161 C16 C15 N17 166.6 123.5
C15 C16 H161 H162 240.0 239.2
C15 C16 H161 H163 120.0 120.9
H162 C16 H161 H163 240.0 241.7
H162 C16 C15 N17 46.6 3.3
C15 C16 H162 H161 120.0 120.9
C15 C16 H162 H163 240.0 239.5
H161 C16 H162 H163 120.0 118.6
H163 C16 C15 N17 286.6 243.7
C15 C16 H163 H161 240.0 239.1
C15 C16 H163 H162 120.0 120.5
H161 C16 H163 H162 240.0 241.4
N3 C4 N17 C5 180.9 179.9