PDB Chemical Component 4PD

Ideal Model

Chemical Description

Name 3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-6-METHYL-1,3-DIHYDRO-2H-PYRROLO[2,3-D]PYRIMIDIN-2-ONE
Formula C12 H16 N3 O7 P
Formal charge 0
Molecular weight 345.245 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-methyl-1,3-dihydro-2H-pyrrolo[2,3-d]pyrimidin-2-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(6-methyl-2-oxo-1H-pyrrolo[2,3-d]pyrimidin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CC2=CN([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C(=O)NC2=N1
SMILES (CACTVS) CC1=CC2=CN([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C(=O)NC2=N1
Stereo SMILES (OpenEye) CC1=CC2=CN(C(=O)NC2=N1)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H16N3O7P/c1-6-2-7-4-15(12(17)14-11(7)13-6)10-3-8(16)9(22-10)5-21-23(18,19)20/h2,4,8-10,16H,3,5H2,1H3,(H,13,14,17)(H2,18,19,20)/t8-,9+,10+/m0/s1
InChIKey descriptor VOKZMFPBFFRNPZ-IVZWLZJFSA-N

Status Information

Last modified 2011-06-04
Created 2006-04-18
Release status REL
Processing site RCSB