PDB Chemical Component 4PC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4PC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.511 1.501
P OP2 1.509 1.618
P O5' 1.628 1.619
P OP3   1.616
OP2 HOP2 0.950 0.981
O5' C5' 1.420 1.418
C5' C4' 1.545 1.523
C5' H5' 1.100 1.092
C5' H5'' 1.100 1.093
C4' O4' 1.454 1.441
C4' C3' 1.536 1.522
C4' H4' 1.100 1.094
O4' C1' 1.439 1.434
C3' O3' 1.436 1.426
C3' C2' 1.508 1.511
C3' H3' 1.100 1.094
O3' HO3' 0.950 0.973
C2' C1' 1.529 1.520
C2' H2' 1.100 1.097
C2' H2'' 1.100 1.095
C1' N1 1.466 1.434
C1' H1' 1.100 1.095
N1 C2 1.411 1.420
N1 C6 1.387 1.384
C2 O2 1.229 1.233
C2 N3 1.389 1.392
N3 C4 1.284 1.290
C4 C5 1.479 1.487
C4 N17 1.373 1.379
C5 C6 1.324 1.326
C5 C14 1.443 1.443
C6 H6 1.080 1.083
C14 C15 1.354 1.353
C14 H14 1.080 1.077
C15 C16 1.483 1.483
C15 N17 1.390 1.391
C16 H161 1.100 1.093
C16 H162 1.100 1.093
C16 H163 1.100 1.093
N17 H17 1.000 1.010
OP3 HOP3   0.981

Bond Angles for 4PC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 121.3 115.3
OP1 P O5' 107.2 115.0
OP1 P OP3   115.0
OP2 P O5' 108.5 103.7
OP2 P OP3   103.3
P OP2 HOP2 109.5 118.9
O5' P OP3   102.9
P O5' C5' 118.6 118.5
P OP3 HOP3   118.9
O5' C5' C4' 112.5 108.9
O5' C5' H5' 107.8 109.0
O5' C5' H5'' 108.5 108.9
C4' C5' H5' 107.8 110.3
C4' C5' H5'' 108.5 110.3
C5' C4' O4' 108.6 107.9
C5' C4' C3' 115.3 112.9
C5' C4' H4' 105.5 109.5
H5' C5' H5'' 111.8 109.3
O4' C4' C3' 107.7 106.2
O4' C4' H4' 113.5 107.9
C4' O4' C1' 107.8 109.3
C3' C4' H4' 106.5 112.2
C4' C3' O3' 110.7 109.9
C4' C3' C2' 103.1 103.1
C4' C3' H3' 112.0 113.5
O4' C1' C2' 106.9 107.4
O4' C1' N1 109.9 109.3
O4' C1' H1' 112.6 108.0
O3' C3' C2' 106.8 109.7
O3' C3' H3' 108.5 107.4
C3' O3' HO3' 109.5 107.3
C2' C3' H3' 115.5 113.2
C3' C2' C1' 102.0 102.5
C3' C2' H2' 113.6 109.7
C3' C2' H2'' 112.0 114.1
C1' C2' H2' 113.6 110.6
C1' C2' H2'' 112.0 111.7
C2' C1' N1 114.1 112.8
C2' C1' H1' 108.3 111.5
H2' C2' H2'' 103.9 108.3
N1 C1' H1' 105.2 107.8
C1' N1 C2 119.1 120.9
C1' N1 C6 119.4 117.5
C2 N1 C6 121.5 121.6
N1 C2 O2 122.5 121.3
N1 C2 N3 119.4 118.8
N1 C6 C5 119.8 119.9
N1 C6 H6 120.1 117.4
O2 C2 N3 118.0 119.9
C2 N3 C4 117.1 118.5
N3 C4 C5 125.8 124.2
N3 C4 N17 129.4 131.0
C5 C4 N17 104.8 104.8
C4 C5 C6 116.2 117.0
C4 C5 C14 107.1 106.9
C4 N17 C15 110.9 110.4
C4 N17 H17 124.6 127.3
C6 C5 C14 136.7 136.1
C5 C6 H6 120.1 122.7
C5 C14 C15 106.9 107.0
C5 C14 H14 126.5 125.7
C15 C14 H14 126.5 127.3
C14 C15 C16 128.2 127.6
C14 C15 N17 110.4 110.9
C16 C15 N17 121.4 121.4
C15 C16 H161 109.4 110.3
C15 C16 H162 109.5 110.3
C15 C16 H163 109.5 110.3
C15 N17 H17 124.6 122.3
H161 C16 H162 109.5 108.8
H161 C16 H163 109.4 108.7
H162 C16 H163 109.5 108.3

Torsion Angles for 4PC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 125.3 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 265.7 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 178.4 179.9
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 235.4 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 45.7 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 132.6 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 30.3 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 180.3 180.0
P O5' C5' H5' 61.6 300.4
P O5' C5' H5'' 300.3 59.6
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 30.3 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 118.7 239.6
C4' C5' O5' H5'' 240.0 120.4
O5' C5' C4' O4' 308.1 62.4
O5' C5' C4' C3' 69.0 179.5
O5' C5' C4' H4' 186.2 305.3
H5' C5' O5' H5'' 121.3 240.8
O5' C5' C4' H5' 241.3 119.6
O5' C5' C4' H5'' 120.0 240.5
H5' C5' C4' H5'' 238.7 120.9
O4' C4' C5' C3' 239.1 242.9
O4' C4' C5' H4' 121.9 117.1
C5' C4' O4' C1' 124.5 108.6
C3' C4' C5' H4' 242.8 234.2
C5' C4' C3' O3' 146.9 154.2
C5' C4' C3' C2' 260.9 271.2
C5' C4' C3' H3' 25.7 34.0
O5' C5' H5' C4' 121.6 240.5
O5' C5' H5' H5'' 240.8 119.0
C4' C5' H5' H5'' 119.2 238.5
H5' C5' C4' O4' 66.8 302.9
H5' C5' C4' C3' 187.7 60.0
H5' C5' C4' H4' 304.9 185.7
O5' C5' H5'' C4' 237.5 119.4
O5' C5' H5'' H5' 118.8 241.0
C4' C5' H5'' H5' 241.2 121.5
H5'' C5' C4' O4' 188.1 181.9
H5'' C5' C4' C3' 309.0 299.0
H5'' C5' C4' H4' 66.2 64.8
O4' C4' C5' H5' 66.8 302.9
O4' C4' C5' H5'' 188.1 181.9
C5' C4' O4' C3' 125.5 121.4
C5' C4' O4' H4' 243.1 241.8
C3' C4' O4' H4' 117.6 120.5
O4' C4' C3' O3' 268.3 272.3
O4' C4' C3' C2' 22.3 29.2
O4' C4' C3' H3' 147.1 152.1
C4' O4' C1' C2' 339.2 351.0
C4' O4' C1' N1 215.0 228.3
C4' O4' C1' H1' 98.1 111.3
C3' C4' C5' H5' 187.7 60.0
C3' C4' C5' H5'' 309.0 299.0
C5' C4' C3' O4' 238.6 241.9
C5' C4' C3' H4' 116.6 124.3
O4' C4' C3' H4' 238.0 242.4
C3' C4' O4' C1' 359.0 347.3
O3' C3' C4' C2' 246.1 243.1
O3' C3' C4' H3' 121.3 120.2
C4' C3' O3' HO3' 352.6 244.3
C2' C3' C4' H3' 235.2 237.2
C4' C3' C2' C1' 326.8 326.6
C4' C3' C2' H2' 204.1 84.1
C4' C3' C2' H2'' 86.8 205.7
H4' C4' C5' H5' 304.9 185.7
H4' C4' C5' H5'' 66.2 64.8
C5' C4' H4' O4' 118.8 117.1
C5' C4' H4' C3' 237.0 233.8
O4' C4' H4' C3' 118.2 116.7
H4' C4' O4' C1' 241.4 226.8
H4' C4' C3' O3' 30.3 29.9
H4' C4' C3' C2' 144.3 146.9
H4' C4' C3' H3' 269.1 269.7
C1' O4' C4' C3' 359.0 347.3
C1' O4' C4' H4' 241.4 226.8
C3' C2' C1' O4' 34.2 26.9
O4' C1' C2' H2' 156.9 270.0
O4' C1' C2' H2'' 274.3 149.4
C2' C1' O4' N1 124.3 122.7
C2' C1' O4' H1' 241.2 239.7
N1 C1' O4' H1' 116.9 117.0
O4' C1' N1 C2 243.3 212.7
O4' C1' N1 C6 63.5 32.9
O3' C3' C4' H4' 30.3 29.9
C4' C3' O3' C2' 111.6 112.7
C4' C3' O3' H3' 236.7 236.1
C2' C3' O3' H3' 125.2 123.4
O3' C3' C2' C1' 83.5 83.6
O3' C3' C2' H2' 320.9 201.1
O3' C3' C2' H2'' 203.5 322.8
C2' C3' C4' H4' 144.3 146.9
C4' C3' C2' O3' 243.3 242.9
C4' C3' C2' H3' 122.5 123.0
O4' C1' C2' C3' 34.2 26.9
O3' C3' C2' H3' 239.2 240.1
C2' C3' O3' HO3' 241.0 131.6
C1' C2' C3' H2' 122.7 242.5
C1' C2' C3' H2'' 240.0 120.8
C3' C2' C1' N1 155.9 147.4
C3' C2' C1' H1' 272.6 268.8
H2' C2' C3' H2'' 117.4 238.3
H3' C3' C4' H4' 269.1 269.7
C4' C3' H3' O3' 122.5 121.7
C4' C3' H3' C2' 242.4 242.9
O3' C3' H3' C2' 119.9 121.3
H3' C3' O3' HO3' 115.8 8.2
H3' C3' C2' C1' 204.3 203.6
H3' C3' C2' H2' 81.7 321.1
H3' C3' C2' H2'' 324.3 82.7
HO3' O3' C3' C2' 241.0 131.6
HO3' O3' C3' H3' 115.8 8.2
O4' C1' C2' N1 238.4 239.5
O4' C1' C2' H1' 121.6 118.1
C1' C2' C3' H3' 204.3 203.6
C3' C2' C1' H2' 237.3 116.9
C3' C2' C1' H2'' 120.0 237.5
H2' C2' C1' H2'' 242.6 120.7
N1 C1' C2' H1' 243.2 238.6
C2' C1' N1 C2 123.3 93.3
C2' C1' N1 C6 303.5 273.5
H2' C2' C3' H3' 81.7 321.1
C3' C2' H2' C1' 116.0 247.7
C3' C2' H2' H2'' 238.0 125.1
C1' C2' H2' H2'' 122.0 237.3
H2' C2' C1' N1 278.5 30.6
H2' C2' C1' H1' 35.3 151.9
H2'' C2' C3' H3' 324.3 82.7
C3' C2' H2'' C1' 246.0 115.6
C3' C2' H2'' H2' 123.0 237.5
C1' C2' H2'' H2' 237.0 122.0
H2'' C2' C1' N1 35.9 269.9
H2'' C2' C1' H1' 152.7 31.3
O4' C1' N1 C2' 120.0 119.4
O4' C1' N1 H1' 238.5 242.9
N1 C1' C2' H2' 278.5 30.6
N1 C1' C2' H2'' 35.9 269.9
C2' C1' N1 H1' 118.5 123.5
C2 N1 C1' C6 179.8 179.8
C1' N1 C2 O2 3.9 0.0
C1' N1 C2 N3 184.6 180.0
C1' N1 C6 C5 176.1 179.9
C1' N1 C6 H6 356.1 359.9
O4' C1' H1' C2' 242.0 242.3
O4' C1' H1' N1 119.6 118.0
H1' C1' C2' H2' 35.3 151.9
H1' C1' C2' H2'' 152.7 31.3
C2' C1' H1' N1 237.6 235.7
H1' C1' N1 C2 4.8 329.8
H1' C1' N1 C6 185.0 150.0
C2 N1 C1' H1' 4.8 329.8
C1' N1 C2 C6 180.2 180.2
C2 N1 C6 C5 356.3 0.1
C2 N1 C6 H6 176.3 180.1
O2 C2 N1 N3 179.2 180.0
N1 C2 N3 C4 357.9 0.1
C6 N1 C1' H1' 185.0 150.0
C1' N1 C6 C2 179.8 179.8
C6 N1 C2 O2 183.7 179.8
C6 N1 C2 N3 4.4 359.9
C4 C5 C6 N1 0.8 0.0
N1 C6 C5 C14 182.5 179.9
C5 C6 N1 H6 180.0 180.0
O2 C2 N1 C6 183.7 179.8
N1 C2 O2 N3 180.8 180.0
O2 C2 N3 C4 178.6 180.1
N3 C2 N1 C6 4.4 359.9
N1 C2 N3 O2 179.3 180.0
C2 N3 C4 C5 359.2 0.1
C2 N3 C4 N17 178.9 179.9
C5 C4 N3 N17 180.3 180.1
N3 C4 C5 C6 1.6 359.9
N3 C4 C5 C14 180.3 180.0
N3 C4 N17 C15 180.2 180.1
N3 C4 N17 H17 0.2 360.0
N1 C6 C5 C4 0.8 0.0
N3 C4 C5 N17 179.7 179.9
C5 C4 N17 C15 359.9 360.0
C5 C4 N17 H17 179.9 179.9
C6 C5 C4 C14 181.3 179.9
C4 C5 C6 H6 180.8 180.0
C4 C5 C14 C15 359.1 359.9
C4 C5 C14 H14 179.1 180.0
N3 C4 N17 C5 180.3 180.1
N17 C4 C5 C6 181.8 180.0
N17 C4 C5 C14 0.6 0.0
C14 C15 N17 C4 359.5 360.0
C16 C15 N17 C4 178.6 179.9
C15 N17 C4 H17 180.0 180.1
N1 C6 C5 H6 180.0 180.0
C6 C5 C4 N17 181.8 180.0
C4 C5 C6 C14 178.3 180.1
C6 C5 C14 C15 177.5 180.0
C6 C5 C14 H14 357.5 0.1
C14 C5 C4 N17 0.6 0.0
C4 C5 C14 C6 181.6 179.9
C14 C5 C6 H6 2.5 359.9
C15 C14 C5 H14 180.0 179.9
C5 C14 C15 C16 181.8 180.1
C5 C14 C15 N17 0.8 0.1
N1 C6 H6 C5 180.0 180.0
H6 C6 C5 C14 2.5 359.9
C4 N17 C15 C14 359.5 360.0
C5 C14 C15 H14 180.0 180.1
C16 C15 C14 N17 180.9 180.0
C14 C15 C16 H161 335.1 304.2
C14 C15 C16 H162 215.1 184.0
C14 C15 C16 H163 95.1 64.3
C14 C15 N17 H17 179.5 180.1
C5 C14 H14 C15 180.0 179.9
H14 C14 C15 C16 1.8 360.0
H14 C14 C15 N17 180.8 180.0
C4 N17 C15 C16 178.6 179.9
C16 C15 C14 H14 1.8 360.0
C14 C15 C16 N17 179.0 180.0
C16 C15 N17 H17 358.6 0.1
H161 C16 C15 H162 120.0 120.2
H161 C16 C15 H163 240.1 239.8
H162 C16 C15 H163 120.0 119.7
C4 N17 C15 H17 180.0 179.9
N17 C15 C14 H14 180.8 180.0
C14 C15 N17 C16 180.9 180.0
N17 C15 C16 H161 156.2 124.2
N17 C15 C16 H162 36.1 4.0
N17 C15 C16 H163 276.1 244.3
H161 C16 C15 N17 156.2 124.2
C15 C16 H161 H162 240.0 238.9
C15 C16 H161 H163 120.0 121.1
H162 C16 H161 H163 240.0 242.2
H162 C16 C15 N17 36.1 4.0
C15 C16 H162 H161 120.0 121.1
C15 C16 H162 H163 240.0 239.1
H161 C16 H162 H163 120.0 118.0
H163 C16 C15 N17 276.1 244.3
C15 C16 H163 H161 240.0 238.9
C15 C16 H163 H162 120.0 120.9
H161 C16 H163 H162 240.0 242.0
C4 N17 H17 C15 180.0 180.1