Atom Nomenclature for 4OL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4OL

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C6 C3
C5 C4
C4 C5
C7 C6
C12 C7
C13 C8
C14 C9
C16 C10
C17 C11
C18 C12
C20 C13
C23 C14
C24 C15
C25 C16
C26 C17
O55 O1
C28 C18
C34 C19
C39 C20
C38 C21
C37 C22
C36 C23
O47 O2
N35 N1
O46 O3
N21 N2
C29 C24
C30 C25
C31 C26
N32 N3
C33 C27
O53 O4
C40 C28
N45 N4
O50 O5
C44 C29
O51 O6
C43 C30
C42 C31
C41 C32
C19 C33
N15 N5
O54 O7
C22 C34
N27 N6
O48 O8
O49 O9
N9 N7
O8 O10
N3 N8
O9 O11
O10 O12
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38