PDB Chemical Component 4OJ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4OJ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.395 1.383
C1 C6 1.390 1.382
C2 C3 1.395 1.382
C3 C4 1.388 1.382
C4 C5 1.394 1.387
C5 C6 1.389 1.387
C5 O12 1.379 1.359
C6 C7 1.520 1.507
O12 P13 1.580 1.610
P13 O1P 1.468 1.481
P13 O2P 1.486 1.610
P13 O3P   1.611
C1 H1 1.080 1.080
C2 H2 1.080 1.081
C3 H3 1.080 1.080
C4 H4 1.080 1.080
C7 H71C 1.099 1.090
C7 H72C 1.100 1.090
C7 H73C 1.100 1.090
O2P HO2P 0.950 0.967
O3P HO3P   0.967

Bond Angles for 4OJ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 119.3 120.0
C1 C2 C3 121.0 120.1
C2 C1 H1 120.4 120.0
C1 C2 H2 119.5 119.9
C1 C6 C5 119.9 119.9
C1 C6 C7 121.5 120.0
C6 C1 H1 120.4 120.0
C2 C3 C4 119.3 120.1
C3 C2 H2 119.5 119.9
C2 C3 H3 120.3 120.0
C3 C4 C5 119.8 119.9
C4 C3 H3 120.3 120.0
C3 C4 H4 120.1 120.0
C4 C5 C6 120.8 119.9
C4 C5 O12 122.2 120.0
C5 C4 H4 120.1 120.1
C6 C5 O12 117.0 120.1
C5 C6 C7 118.7 120.1
C5 O12 P13 128.6 114.1
C6 C7 H71C 109.5 109.5
C6 C7 H72C 109.5 109.4
C6 C7 H73C 109.4 109.5
O12 P13 O1P 112.2 109.5
O12 P13 O2P 107.1 109.5
O12 P13 O3P   109.5
O1P P13 O2P 111.7 109.5
O1P P13 O3P   109.4
O2P P13 O3P   109.5
P13 O2P HO2P 109.5 114.0
P13 O3P HO3P   114.0
H71C C7 H72C 109.4 109.4
H71C C7 H73C 109.5 109.5
H72C C7 H73C 109.5 109.5

Torsion Angles for 4OJ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 C5 0.2 359.9
C2 C1 C6 C7 179.9 180.0
C6 C1 C2 H1 180.0 180.3
C1 C2 C3 C4 359.8 0.0
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 H3 179.8 180.0
C6 C1 C2 C3 0.0 0.0
C2 C1 C6 H1 180.0 179.7
C6 C1 C2 H2 180.0 180.0
C4 C5 C6 C1 359.8 0.1
C1 C6 C5 O12 179.3 180.1
C5 C6 C1 C7 180.3 179.9
C1 C6 C7 H71C 90.2 90.0
C1 C6 C7 H72C 210.2 210.0
C1 C6 C7 H73C 330.2 329.9
C3 C2 C1 C6 0.0 0.0
C3 C2 C1 H1 180.0 179.7
C1 C2 C3 H2 180.0 180.0
C2 C3 C4 C5 0.2 360.0
C4 C3 C2 H3 180.0 180.1
C2 C3 C4 H4 180.2 179.9
C4 C3 C2 H2 179.8 180.0
C2 C3 C4 H3 180.0 179.9
C3 C4 C5 C6 359.9 360.0
C3 C4 C5 O12 180.6 180.0
C5 C4 C3 H4 180.0 180.0
C1 C6 C5 C4 359.8 0.1
C5 C4 C3 H3 180.3 180.0
C3 C4 C5 H4 180.0 180.0
C6 C5 C4 O12 179.4 180.0
C4 C5 C6 C7 180.2 180.0
C4 C5 O12 P13 272.7 75.0
C1 C6 C5 C7 179.7 180.1
C5 C6 C1 H1 180.1 180.2
C4 C5 C6 O12 180.6 180.0
C6 C5 C4 H4 179.9 180.0
C6 C5 O12 P13 93.3 255.0
C5 C6 C7 H71C 269.9 270.1
C5 C6 C7 H72C 29.8 30.0
C5 C6 C7 H73C 149.8 150.0
C4 C5 O12 C6 179.4 180.0
O12 C5 C4 H4 0.6 0.0
O12 C5 C6 C7 359.6 360.0
C5 O12 P13 O1P 8.8 54.9
C5 O12 P13 O2P 131.7 175.0
C5 O12 P13 O3P   295.0
C1 C6 C7 C5 180.3 179.9
C7 C6 C1 H1 359.8 0.3
C7 C6 C5 O12 359.6 360.0
H71C C7 C6 H72C 240.0 240.1
H71C C7 C6 H73C 120.0 120.1
H72C C7 C6 H73C 240.0 240.0
O1P P13 O12 O2P 237.1 240.0
O1P P13 O12 O3P   119.9
O2P P13 O12 O3P   240.0
O12 P13 O2P HO2P 236.7 180.0
O12 P13 O3P HO3P   300.0
O12 P13 O1P O2P 120.3 120.0
O12 P13 O1P O3P   240.0
O2P P13 O1P O3P   120.0
O1P P13 O2P HO2P 360.0 300.0
O1P P13 O3P HO3P   180.0
O12 P13 O2P O1P 236.7 240.0
O12 P13 O2P O3P   120.0
O1P P13 O2P O3P   240.0
O2P P13 O3P HO3P   60.0
O12 P13 O3P O1P   120.0
O12 P13 O3P O2P   239.9
O1P P13 O3P O2P   120.0
O3P P13 O2P HO2P   59.9
C2 C1 H1 C6 180.0 180.3
H1 C1 C2 C3 180.0 179.7
H1 C1 C2 H2 0.1 359.7
H1 C1 C6 C5 180.1 180.2
H1 C1 C6 C7 359.8 0.3
H2 C2 C1 C6 180.0 180.0
C1 C2 H2 C3 180.0 180.0
H2 C2 C1 H1 0.1 359.7
H2 C2 C3 C4 179.8 180.0
H2 C2 C3 H3 359.7 359.9
C2 C3 H3 C4 180.0 180.1
H3 C3 C2 H2 359.7 359.9
H3 C3 C4 C5 180.3 180.0
H3 C3 C4 H4 0.3 360.0
C3 C4 H4 C5 180.0 180.0
H4 C4 C3 H3 0.3 360.0
H4 C4 C5 C6 179.9 180.0
H4 C4 C5 O12 0.6 0.0
C6 C7 H71C H72C 120.0 120.0
C6 C7 H71C H73C 240.0 240.0
H72C C7 H71C H73C 120.0 120.0
C6 C7 H72C H71C 240.0 240.0
C6 C7 H72C H73C 120.0 120.0
H71C C7 H72C H73C 240.0 239.9
C6 C7 H73C H71C 120.0 120.0
C6 C7 H73C H72C 240.0 240.0
H71C C7 H73C H72C 120.0 120.0
HO2P O2P P13 O3P   59.9