PDB Chemical Component 4OC

Ideal Model

Chemical Description

Name 4N,O2'-METHYLCYTIDINE-5'-MONOPHOSPHATE
Formula C11 H18 N3 O8 P
Formal charge 0
Molecular weight 351.250 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 41
Chiral atom count 4
Chiral atoms C4' C3' C2' C1'
Observed leaving atoms OP3 HO3'
Bond count 42
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) N-methyl-2'-O-methylcytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-3-hydroxy-4-methoxy-5-(4-methylamino-2-oxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OC
SMILES (CACTVS) CNC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OC
Stereo SMILES (OpenEye) CNC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OC
InChI descriptor InChI=1S/C11H18N3O8P/c1-12-7-3-4-14(11(16)13-7)10-9(20-2)8(15)6(22-10)5-21-23(17,18)19/h3-4,6,8-10,15H,5H2,1-2H3,(H,12,13,16)(H2,17,18,19)/t6-,8-,9-,10-/m1/s1
InChIKey descriptor GPJNLASIBKTFTM-PEBGCTIMSA-N

Status Information

Last modified 2011-06-04
Created 2006-08-24
Release status REL
Model PDB code 2I1C
Processing site EBI