PDB Chemical Component 4OC

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4OC

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P O5' 1.635 1.619
P OP1 1.466 1.501
P OP3   1.617
P OP2 1.614 1.618
OP2 HOP2 0.950 0.980
O5' C5' 1.429 1.416
CM2 O2' 1.436 1.424
CM2 HM21 1.100 1.093
CM2 HM22 1.100 1.093
CM2 HM23 1.100 1.092
C5' C4' 1.505 1.523
C5' H5' 1.100 1.092
C5' H5'' 1.100 1.091
C4' O4' 1.402 1.444
C4' C3' 1.535 1.523
C4' H4' 1.100 1.095
O4' C1' 1.440 1.437
C3' O3' 1.409 1.427
C3' C2' 1.534 1.514
C3' H3' 1.100 1.093
C2' C1' 1.569 1.519
C2' O2' 1.428 1.413
C2' H2' 1.100 1.097
C1' N1 1.380 1.435
C1' H1' 1.100 1.094
N1 C6 1.390 1.387
N1 C2 1.383 1.418
C2 O2 1.234 1.232
C2 N3 1.343 1.384
N3 C4 1.356 1.307
C4 N4 1.481 1.376
C4 C5 1.441 1.486
N4 CM4 1.482 1.432
N4 HN4 1.000 0.986
C5 C6 1.359 1.332
C5 H5 1.080 1.082
C6 H6 1.080 1.085
CM4 HM41 1.100 1.093
CM4 HM42 1.100 1.093
CM4 HM43 1.100 1.093
O3' HO3' 0.950 0.969
OP3 HOP3   0.980

Bond Angles for 4OC

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' 119.0 115.0
O5' P OP3   103.8
OP2 P O5' 115.5 102.9
P O5' C5' 105.5 118.5
OP1 P OP3   115.3
OP1 P OP2 121.1 114.9
OP2 P OP3   103.3
P OP3 HOP3   119.0
P OP2 HOP2 109.5 119.0
O5' C5' C4' 110.7 108.6
O5' C5' H5' 109.1 109.2
O5' C5' H5'' 108.8 109.3
O2' CM2 HM21 109.5 109.5
O2' CM2 HM22 109.5 109.5
O2' CM2 HM23 109.5 109.0
CM2 O2' C2' 107.7 111.9
HM21 CM2 HM22 109.5 110.1
HM21 CM2 HM23 109.5 109.4
HM22 CM2 HM23 109.5 109.4
C4' C5' H5' 109.0 110.1
C4' C5' H5'' 108.8 110.1
C5' C4' O4' 122.5 108.2
C5' C4' C3' 110.9 113.3
C5' C4' H4' 99.0 109.3
H5' C5' H5'' 110.4 109.6
O4' C4' C3' 112.2 105.9
O4' C4' H4' 97.2 107.7
C4' O4' C1' 109.6 109.2
C3' C4' H4' 113.2 112.2
C4' C3' O3' 121.0 107.9
C4' C3' C2' 103.9 102.1
C4' C3' H3' 108.0 114.5
O4' C1' C2' 108.4 106.5
O4' C1' N1 107.1 109.0
O4' C1' H1' 111.9 108.9
C2' C3' O3' 115.5 110.3
O3' C3' H3' 93.9 107.8
C3' O3' HO3' 109.5 106.4
C2' C3' H3' 114.5 114.0
C3' C2' C1' 105.5 102.0
C3' C2' O2' 114.3 112.3
C3' C2' H2' 111.3 110.1
O2' C2' C1' 115.6 112.6
C1' C2' H2' 109.9 111.1
C2' C1' N1 110.1 112.5
C2' C1' H1' 109.0 112.6
O2' C2' H2' 100.3 108.6
N1 C1' H1' 110.3 107.3
C1' N1 C6 113.7 118.7
C1' N1 C2 126.2 122.0
C2 N1 C6 120.1 119.3
N1 C6 C5 120.0 122.7
N1 C6 H6 120.0 116.1
N1 C2 O2 119.0 120.9
N1 C2 N3 120.8 118.9
O2 C2 N3 120.2 120.2
C2 N3 C4 120.6 121.1
N3 C4 N4 120.0 120.2
N3 C4 C5 120.1 121.6
N4 C4 C5 120.0 118.2
C4 N4 CM4 120.3 120.2
C4 N4 HN4 106.0 116.3
C4 C5 C6 118.5 116.4
C4 C5 H5 120.8 120.5
CM4 N4 HN4 106.0 123.4
N4 CM4 HM41 109.5 110.1
N4 CM4 HM42 109.5 110.2
N4 CM4 HM43 109.5 110.2
C6 C5 H5 120.8 123.1
C5 C6 H6 120.0 121.2
HM41 CM4 HM42 109.4 108.8
HM41 CM4 HM43 109.4 108.8
HM42 CM4 HM43 109.5 108.7

Torsion Angles for 4OC

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP1 P O5' OP3   126.9
OP1 P O5' OP2 203.2 234.2
OP2 P O5' OP3   252.6
O5' P OP3 HOP3   175.4
O5' P OP2 HOP2 240.9 186.2
P O5' C5' C4' 167.3 180.0
P O5' C5' H5' 287.3 300.1
P O5' C5' H5'' 47.8 59.9
O5' P OP1 OP3   239.3
OP2 P OP1 O5' 204.5 240.7
OP1 P O5' C5' 16.1 180.1
OP2 P OP1 OP3   120.0
OP1 P OP3 HOP3   48.7
OP1 P OP2 HOP2 37.2 312.0
OP1 P OP3 O5'   233.4
OP2 P OP3 O5'   107.1
OP3 P O5' C5'   53.2
OP1 P OP3 OP2   126.2
OP3 P OP2 HOP2   78.5
OP1 P OP2 O5' 156.3 125.8
O5' P OP2 OP3   107.7
OP2 P O5' C5' 172.9 305.8
OP1 P OP2 OP3   233.5
OP2 P OP3 HOP3   282.5
HOP2 OP2 P O5' 240.9 186.2
HOP2 OP2 P OP3   78.5
C5' O5' P OP3   53.2
C4' C5' O5' H5' 240.0 239.9
C4' C5' O5' H5'' 119.5 120.1
O5' C5' C4' O4' 29.8 62.4
O5' C5' C4' C3' 166.1 179.5
O5' C5' C4' H4' 285.3 305.4
H5' C5' O5' H5'' 239.5 240.2
HM21 CM2 O2' HM22 240.0 120.8
HM21 CM2 O2' HM23 120.0 240.4
HM22 CM2 O2' HM23 240.0 119.6
C3' C2' O2' CM2 87.3 300.0
CM2 O2' C2' C1' 324.6 185.5
CM2 O2' C2' H2' 206.4 62.0
O2' CM2 HM21 HM22 120.0 239.6
O2' CM2 HM21 HM23 240.0 119.3
HM21 CM2 O2' C2' 9.4 50.5
HM22 CM2 HM21 HM23 120.0 239.8
O2' CM2 HM22 HM21 240.0 120.4
O2' CM2 HM22 HM23 120.0 240.6
HM22 CM2 O2' C2' 129.4 289.7
HM21 CM2 HM22 HM23 240.0 120.2
O2' CM2 HM23 HM21 120.0 240.4
O2' CM2 HM23 HM22 240.0 119.7
HM23 CM2 O2' C2' 249.4 170.1
HM21 CM2 HM23 HM22 120.0 239.4
O5' C5' C4' H5' 120.0 119.5
O5' C5' C4' H5'' 240.5 240.4
H5' C5' C4' H5'' 120.5 120.9
O4' C4' C5' C3' 223.7 242.9
O4' C4' C5' H4' 104.5 117.0
C5' C4' O4' C1' 142.0 109.0
C3' C4' C5' H4' 240.8 234.1
C5' C4' C3' O3' 83.7 156.8
C5' C4' C3' C2' 215.5 273.1
C5' C4' C3' H3' 337.5 36.8
O5' C5' H5' C4' 239.0 240.8
O5' C5' H5' H5'' 119.5 119.6
C4' C5' H5' H5'' 240.5 238.8
H5' C5' C4' O4' 269.8 302.9
H5' C5' C4' C3' 46.1 60.0
H5' C5' C4' H4' 165.3 185.9
O5' C5' H5'' C4' 120.7 119.2
O5' C5' H5'' H5' 240.3 240.4
C4' C5' H5'' H5' 119.6 121.2
H5'' C5' C4' O4' 149.3 182.0
H5'' C5' C4' C3' 285.6 299.1
H5'' C5' C4' H4' 44.7 65.0
O4' C4' C5' H5' 269.8 302.9
O4' C4' C5' H5'' 149.3 182.0
C5' C4' O4' C3' 135.8 121.7
C5' C4' O4' H4' 254.5 241.9
C3' C4' O4' H4' 118.7 120.2
O4' C4' C3' O3' 224.8 275.3
O4' C4' C3' C2' 356.6 31.5
O4' C4' C3' H3' 118.5 155.2
C4' O4' C1' C2' 353.8 348.7
C4' O4' C1' N1 235.0 227.1
C4' O4' C1' H1' 114.0 110.3
C3' C4' C5' H5' 46.1 60.0
C3' C4' C5' H5'' 285.6 299.1
C5' C4' C3' O4' 219.0 241.6
C5' C4' C3' H4' 110.2 124.4
O4' C4' C3' H4' 251.2 242.8
C3' C4' O4' C1' 6.1 347.2
C2' C3' C4' O3' 131.8 116.3
O3' C3' C4' H3' 106.2 120.1
C4' C3' O3' HO3' 329.3 15.2
C2' C3' C4' H3' 238.0 236.3
C4' C3' C2' C1' 359.6 322.9
C4' C3' C2' O2' 231.6 202.0
C4' C3' C2' H2' 118.8 80.9
H4' C4' C5' H5' 165.3 185.9
H4' C4' C5' H5'' 44.7 65.0
C5' C4' H4' O4' 124.7 117.3
C5' C4' H4' C3' 242.6 233.5
O4' C4' H4' C3' 117.9 116.2
H4' C4' O4' C1' 247.4 227.0
H4' C4' C3' O3' 333.5 32.5
H4' C4' C3' C2' 105.3 148.7
H4' C4' C3' H3' 227.3 272.4
C1' O4' C4' C3' 6.1 347.2
C1' O4' C4' H4' 247.4 227.0
C3' C2' C1' O4' 3.9 30.7
O2' C2' C1' O4' 131.2 151.3
O4' C1' C2' H2' 243.8 273.4
C2' C1' O4' N1 118.8 121.6
C2' C1' O4' H1' 239.8 238.4
N1 C1' O4' H1' 121.0 116.8
O4' C1' N1 C6 359.5 32.3
O4' C1' N1 C2 179.4 212.2
O3' C3' C4' H4' 333.5 32.5
C4' C3' O3' C2' 126.7 110.7
C4' C3' O3' H3' 246.3 235.8
C2' C3' O3' H3' 119.6 125.1
O3' C3' C2' C1' 134.5 77.4
O3' C3' C2' O2' 6.5 316.5
O3' C3' C2' H2' 253.8 195.4
CM2 O2' C2' C3' 87.3 300.0
C2' C3' C4' H4' 105.3 148.7
C4' C3' C2' O3' 225.1 245.5
C4' C3' C2' H3' 117.5 124.0
O4' C1' C2' C3' 3.9 30.7
O3' C3' C2' H3' 252.5 238.5
C2' C3' O3' HO3' 202.6 264.4
O2' C2' C3' C1' 232.0 239.2
C1' C2' C3' H2' 240.8 242.0
C3' C2' C1' N1 120.8 150.0
C3' C2' C1' H1' 241.9 271.5
O2' C2' C3' H2' 112.7 121.1
H3' C3' C4' H4' 227.3 272.4
C4' C3' H3' O3' 124.4 120.1
C4' C3' H3' C2' 244.8 243.0
C2' C3' H3' O3' 239.6 237.2
H3' C3' O3' HO3' 83.0 139.4
H3' C3' C2' C1' 242.1 198.9
H3' C3' C2' O2' 114.0 78.0
H3' C3' C2' H2' 1.3 316.9
O4' C1' C2' N1 243.1 240.7
O4' C1' C2' H1' 122.0 119.3
C1' C2' C3' O3' 134.5 77.4
C1' C2' C3' H3' 242.1 198.9
C3' C2' C1' O2' 232.7 239.4
C3' C2' C1' H2' 120.2 117.3
O2' C2' C1' H2' 247.4 237.9
N1 C1' C2' H1' 238.9 238.6
C2' C1' N1 C6 241.8 274.4
C2' C1' N1 C2 61.7 94.4
C2' O2' CM2 HM21 9.4 50.5
C2' O2' CM2 HM22 129.4 289.7
C2' O2' CM2 HM23 249.4 170.1
O4' C1' C2' O2' 131.2 151.3
O2' C2' C3' O3' 6.5 316.5
O2' C2' C3' H3' 114.0 78.0
C3' C2' O2' C1' 122.7 114.5
C3' C2' O2' H2' 240.8 238.0
C1' C2' O2' H2' 118.1 123.5
O2' C2' C1' N1 248.0 270.6
O2' C2' C1' H1' 9.1 32.1
H2' C2' C3' O3' 253.8 195.4
H2' C2' C3' H3' 1.3 316.9
C3' C2' H2' C1' 243.4 247.7
C3' C2' H2' O2' 121.3 123.3
O2' C2' H2' C1' 122.2 124.4
H2' C2' C1' N1 0.6 32.7
H2' C2' C1' H1' 121.7 154.2
O4' C1' N1 C2' 117.7 117.9
O4' C1' N1 H1' 238.0 242.3
N1 C1' C2' H2' 0.6 32.7
C2' C1' N1 H1' 120.3 124.4
C2 N1 C1' C6 179.9 180.0
C1' N1 C6 C5 178.5 180.0
C1' N1 C6 H6 358.5 359.9
C1' N1 C2 O2 0.2 360.0
C1' N1 C2 N3 181.8 180.0
O4' C1' H1' C2' 240.1 242.1
O4' C1' H1' N1 119.1 117.8
H1' C1' C2' H2' 121.7 154.2
C2' C1' H1' N1 239.0 235.7
H1' C1' N1 C6 121.5 150.0
H1' C1' N1 C2 301.4 330.0
C6 N1 C1' H1' 121.5 150.0
C1' N1 C6 C2 179.9 180.0
C6 N1 C2 O2 180.1 180.0
C6 N1 C2 N3 1.8 360.0
C4 C5 C6 N1 1.0 360.0
N1 C6 C5 H5 181.0 179.9
C5 C6 N1 H6 180.0 180.1
C2 N1 C1' H1' 301.4 330.0
C1' N1 C2 C6 180.1 180.0
C2 N1 C6 C5 358.6 0.0
C2 N1 C6 H6 178.5 180.0
O2 C2 N1 N3 178.4 180.0
N1 C2 N3 C4 358.2 360.0
O2 C2 N1 C6 180.1 180.0
N1 C2 O2 N3 181.6 180.0
O2 C2 N3 C4 179.9 180.0
N3 C2 N1 C6 1.8 360.0
N1 C2 N3 O2 178.3 180.0
C2 N3 C4 N4 180.1 180.0
C2 N3 C4 C5 1.4 0.0
N4 C4 N3 C5 178.7 180.0
N3 C4 N4 CM4 0.1 0.0
N3 C4 N4 HN4 120.1 180.0
N3 C4 C5 C6 359.0 0.0
N3 C4 C5 H5 179.0 180.1
N3 C4 N4 C5 181.3 180.0
N4 C4 C5 C6 180.3 180.0
N4 C4 C5 H5 0.3 0.0
CM4 N4 C4 HN4 240.0 180.0
C4 N4 CM4 HM41 321.2 251.1
C4 N4 CM4 HM42 81.1 131.1
C4 N4 CM4 HM43 201.2 11.1
N1 C6 C5 C4 1.0 360.0
N3 C4 C5 N4 178.7 180.0
C5 C4 N4 CM4 178.8 180.0
C5 C4 N4 HN4 298.9 360.0
C6 C5 C4 H5 180.0 179.9
C4 C5 C6 H6 181.1 180.0
CM4 N4 C4 C5 178.8 180.0
C4 N4 CM4 HN4 120.0 180.0
HM41 CM4 N4 HM42 240.0 120.0
HM41 CM4 N4 HM43 120.0 240.0
HM42 CM4 N4 HM43 240.0 120.0
HN4 N4 C4 C5 298.9 360.0
C4 N4 HN4 CM4 231.1 180.0
HN4 N4 CM4 HM41 201.2 71.1
HN4 N4 CM4 HM42 321.1 311.1
HN4 N4 CM4 HM43 81.2 191.2
N1 C6 C5 H6 180.0 179.9
C4 C5 C6 H5 180.0 180.1
C4 C5 H5 C6 180.0 179.9
H5 C5 C6 H6 1.1 360.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 H5 1.1 360.0
HM41 CM4 N4 HN4 201.2 71.1
N4 CM4 HM41 HM42 120.0 239.1
N4 CM4 HM41 HM43 240.0 120.9
HM42 CM4 HM41 HM43 120.0 241.8
HM42 CM4 N4 HN4 321.1 311.1
N4 CM4 HM42 HM41 240.0 120.8
N4 CM4 HM42 HM43 120.0 239.1
HM41 CM4 HM42 HM43 240.1 118.3
HM43 CM4 N4 HN4 81.2 191.2
N4 CM4 HM43 HM41 120.1 239.2
N4 CM4 HM43 HM42 240.0 120.9
HM41 CM4 HM43 HM42 119.9 241.7
HO3' O3' C3' H3' 83.0 139.4