PDB Chemical Component 4O6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4O6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C17 |
O16 |
1.427 |
1.430 |
| C17 |
C20 |
1.508 |
1.528 |
| O16 |
C13 |
1.419 |
1.429 |
| C20 |
N09 |
1.474 |
1.471 |
| C13 |
C10 |
1.505 |
1.533 |
| N09 |
C10 |
1.472 |
1.472 |
| N09 |
C07 |
1.349 |
1.348 |
| O08 |
C07 |
1.216 |
1.212 |
| C07 |
C05 |
1.534 |
1.507 |
| C05 |
C01 |
1.523 |
1.530 |
| C05 |
N23 |
1.473 |
1.464 |
| N23 |
C24 |
1.478 |
1.468 |
| N23 |
C52 |
1.352 |
1.344 |
| O53 |
C52 |
1.218 |
1.213 |
| C24 |
C27 |
1.520 |
1.545 |
| C52 |
C30 |
1.526 |
1.513 |
| C27 |
C30 |
1.533 |
1.546 |
| N32 |
C30 |
1.464 |
1.464 |
| N32 |
S34 |
1.625 |
1.656 |
| O36 |
S34 |
1.436 |
1.421 |
| S34 |
C37 |
1.763 |
1.762 |
| S34 |
O35 |
1.435 |
1.422 |
| C37 |
C39 |
1.329 |
1.325 |
| C50 |
C48 |
1.388 |
1.379 |
| C50 |
C41 |
1.402 |
1.395 |
| C39 |
C41 |
1.471 |
1.478 |
| C48 |
C46 |
1.381 |
1.385 |
| C41 |
C42 |
1.397 |
1.395 |
| C46 |
CL1 |
1.748 |
1.737 |
| C46 |
C44 |
1.379 |
1.384 |
| C42 |
C44 |
1.387 |
1.380 |
| C01 |
H1 |
1.100 |
1.090 |
| C01 |
H2 |
1.100 |
1.089 |
| C01 |
H3 |
1.100 |
1.090 |
| C05 |
H4 |
1.100 |
1.091 |
| C10 |
H5 |
1.101 |
1.090 |
| C10 |
H6 |
1.100 |
1.090 |
| C13 |
H7 |
1.100 |
1.090 |
| C13 |
H8 |
1.100 |
1.089 |
| C17 |
H9 |
1.100 |
1.090 |
| C17 |
H10 |
1.100 |
1.090 |
| C20 |
H11 |
1.100 |
1.091 |
| C20 |
H12 |
1.100 |
1.090 |
| C24 |
H13 |
1.100 |
1.089 |
| C24 |
H14 |
1.100 |
1.090 |
| C27 |
H15 |
1.100 |
1.090 |
| C27 |
H16 |
1.100 |
1.091 |
| C30 |
H17 |
1.100 |
1.090 |
| N32 |
H18 |
1.000 |
0.971 |
| C37 |
H19 |
1.080 |
1.080 |
| C39 |
H20 |
1.080 |
1.080 |
| C42 |
H21 |
1.080 |
1.080 |
| C44 |
H22 |
1.080 |
1.080 |
| C48 |
H23 |
1.080 |
1.080 |
| C50 |
H24 |
1.080 |
1.080 |
Bond Angles for 4O6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C20 |
C17 |
H9 |
108.9 |
109.6 |
| C20 |
C17 |
H10 |
108.9 |
109.4 |
| C17 |
C20 |
H11 |
109.3 |
109.7 |
| C17 |
C20 |
H12 |
109.3 |
109.7 |
| O16 |
C13 |
H7 |
109.0 |
109.5 |
| O16 |
C13 |
H8 |
109.0 |
109.6 |
| C13 |
C10 |
H5 |
109.3 |
109.7 |
| C13 |
C10 |
H6 |
109.3 |
109.8 |
| N09 |
C10 |
H5 |
109.3 |
109.7 |
| N09 |
C10 |
H6 |
109.3 |
109.7 |
| C07 |
C05 |
N23 |
110.0 |
109.5 |
| C07 |
C05 |
H4 |
107.4 |
109.5 |
| C05 |
C01 |
H1 |
109.5 |
109.5 |
| C05 |
C01 |
H2 |
109.4 |
109.5 |
| C05 |
C01 |
H3 |
109.5 |
109.5 |
| C05 |
N23 |
C24 |
123.9 |
124.4 |
| C05 |
N23 |
C52 |
123.7 |
124.4 |
| N23 |
C05 |
H4 |
108.1 |
109.5 |
| C24 |
N23 |
C52 |
112.2 |
111.3 |
| N23 |
C24 |
C27 |
103.1 |
105.5 |
| N23 |
C24 |
H13 |
111.0 |
110.2 |
| N23 |
C24 |
H14 |
111.0 |
110.2 |
| N23 |
C52 |
C30 |
107.3 |
110.1 |
| C24 |
C27 |
C30 |
101.7 |
101.8 |
| C27 |
C24 |
H13 |
111.0 |
110.3 |
| C27 |
C24 |
H14 |
111.0 |
110.2 |
| C24 |
C27 |
H15 |
111.4 |
111.0 |
| C24 |
C27 |
H16 |
111.4 |
110.9 |
| C52 |
C30 |
H17 |
108.1 |
110.3 |
| C30 |
C27 |
H15 |
111.4 |
111.0 |
| C30 |
C27 |
H16 |
111.4 |
111.0 |
| C27 |
C30 |
H17 |
108.0 |
110.5 |
| N32 |
C30 |
H17 |
108.9 |
110.4 |
| N32 |
S34 |
C37 |
107.8 |
107.2 |
| N32 |
S34 |
O35 |
106.4 |
106.4 |
| S34 |
N32 |
H18 |
106.8 |
120.0 |
| O36 |
S34 |
C37 |
108.1 |
106.5 |
| O35 |
S34 |
C37 |
108.0 |
106.4 |
| S34 |
C37 |
C39 |
120.7 |
120.0 |
| S34 |
C37 |
H19 |
119.6 |
120.0 |
| C37 |
C39 |
C41 |
126.8 |
120.0 |
| C39 |
C37 |
H19 |
119.7 |
120.0 |
| C37 |
C39 |
H20 |
116.6 |
120.0 |
| C50 |
C48 |
H23 |
120.4 |
119.9 |
| C39 |
C41 |
C42 |
119.5 |
120.1 |
| C41 |
C39 |
H20 |
116.6 |
120.0 |
| C41 |
C42 |
C44 |
121.5 |
119.9 |
| C41 |
C42 |
H21 |
119.3 |
120.1 |
| C46 |
C44 |
H22 |
120.4 |
120.0 |
| C44 |
C42 |
H21 |
119.3 |
120.0 |
| C42 |
C44 |
H22 |
120.4 |
119.9 |
| H1 |
C01 |
H2 |
109.5 |
109.5 |
| H1 |
C01 |
H3 |
109.4 |
109.4 |
| H2 |
C01 |
H3 |
109.5 |
109.5 |
| H5 |
C10 |
H6 |
109.5 |
109.7 |
| H7 |
C13 |
H8 |
109.5 |
109.5 |
| H9 |
C17 |
H10 |
109.5 |
109.5 |
| H11 |
C20 |
H12 |
109.5 |
109.7 |
| H13 |
C24 |
H14 |
109.5 |
110.3 |
| H15 |
C27 |
H16 |
109.5 |
110.9 |
Torsion Angles for 4O6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C17 |
O16 |
C13 |
H7 |
58.1 |
177.6 |
| C17 |
O16 |
C13 |
H8 |
177.5 |
57.4 |
| H9 |
C17 |
C20 |
H10 |
119.3 |
120.1 |
| H11 |
C20 |
C17 |
H12 |
240.2 |
120.5 |
| O16 |
C13 |
C10 |
H5 |
175.9 |
292.6 |
| O16 |
C13 |
C10 |
H6 |
295.7 |
172.1 |
| H7 |
C13 |
O16 |
H8 |
240.6 |
120.2 |
| C20 |
N09 |
C10 |
H5 |
190.6 |
69.5 |
| C20 |
N09 |
C10 |
H6 |
70.8 |
189.9 |
| N09 |
C10 |
C13 |
H5 |
239.9 |
119.7 |
| N09 |
C10 |
C13 |
H6 |
120.1 |
240.2 |
| H5 |
C10 |
C13 |
H6 |
240.2 |
120.5 |
| C13 |
C10 |
N09 |
H5 |
120.1 |
240.3 |
| C13 |
C10 |
N09 |
H6 |
239.9 |
119.8 |
| H5 |
C10 |
N09 |
H6 |
119.8 |
239.5 |
| N09 |
C07 |
C05 |
N23 |
149.6 |
163.6 |
| N09 |
C07 |
C05 |
H4 |
32.1 |
43.6 |
| O08 |
C07 |
C05 |
N23 |
328.1 |
343.5 |
| O08 |
C07 |
C05 |
H4 |
210.6 |
223.6 |
| C07 |
C05 |
C01 |
H1 |
180.0 |
55.1 |
| C07 |
C05 |
C01 |
H2 |
300.0 |
175.1 |
| C07 |
C05 |
C01 |
H3 |
60.0 |
295.1 |
| C07 |
C05 |
N23 |
C24 |
86.9 |
240.0 |
| C07 |
C05 |
N23 |
C52 |
262.0 |
59.7 |
| N23 |
C05 |
C07 |
H4 |
117.4 |
120.0 |
| H1 |
C01 |
C05 |
H2 |
240.0 |
240.0 |
| H1 |
C01 |
C05 |
H3 |
120.0 |
120.0 |
| H2 |
C01 |
C05 |
H3 |
240.0 |
240.0 |
| C07 |
C05 |
N23 |
H4 |
243.0 |
240.0 |
| N23 |
C05 |
C01 |
H1 |
303.9 |
175.1 |
| N23 |
C05 |
C01 |
H2 |
63.8 |
295.1 |
| N23 |
C05 |
C01 |
H3 |
183.9 |
55.1 |
| C24 |
N23 |
C05 |
C52 |
184.9 |
180.3 |
| C05 |
N23 |
C24 |
C27 |
197.1 |
197.0 |
| C05 |
N23 |
C24 |
H13 |
316.1 |
316.0 |
| C05 |
N23 |
C24 |
H14 |
78.2 |
78.0 |
| C05 |
N23 |
C52 |
C30 |
184.2 |
179.4 |
| C05 |
N23 |
C24 |
C52 |
175.6 |
179.7 |
| C24 |
N23 |
C05 |
H4 |
203.9 |
360.0 |
| C24 |
N23 |
C52 |
C30 |
359.8 |
359.2 |
| N23 |
C24 |
C27 |
C30 |
327.2 |
334.6 |
| C27 |
C24 |
N23 |
H13 |
241.0 |
241.0 |
| C27 |
C24 |
N23 |
H14 |
119.0 |
119.0 |
| N23 |
C24 |
C27 |
H15 |
85.9 |
92.7 |
| N23 |
C24 |
C27 |
H16 |
208.5 |
216.5 |
| H13 |
C24 |
N23 |
H14 |
237.9 |
238.0 |
| C05 |
N23 |
C52 |
C24 |
184.4 |
180.3 |
| C52 |
N23 |
C05 |
H4 |
19.0 |
179.7 |
| C52 |
N23 |
C24 |
C27 |
21.6 |
17.3 |
| C52 |
N23 |
C24 |
H13 |
140.5 |
136.3 |
| C52 |
N23 |
C24 |
H14 |
262.6 |
258.3 |
| N23 |
C52 |
C30 |
H17 |
93.3 |
102.8 |
| O53 |
C52 |
C30 |
H17 |
274.3 |
282.7 |
| C27 |
C24 |
N23 |
C52 |
21.6 |
17.3 |
| N23 |
C24 |
C27 |
H13 |
119.0 |
119.0 |
| N23 |
C24 |
C27 |
H14 |
241.0 |
241.0 |
| C30 |
C27 |
C24 |
H15 |
241.3 |
241.9 |
| C30 |
C27 |
C24 |
H16 |
118.7 |
118.1 |
| C24 |
C27 |
C30 |
H17 |
278.4 |
266.1 |
| H13 |
C24 |
C27 |
H14 |
122.0 |
122.0 |
| H15 |
C27 |
C24 |
H16 |
237.5 |
236.2 |
| C52 |
C30 |
C27 |
H15 |
274.1 |
266.5 |
| C52 |
C30 |
C27 |
H16 |
151.6 |
142.7 |
| C27 |
C30 |
C52 |
H17 |
245.7 |
241.4 |
| N32 |
C30 |
C52 |
H17 |
120.9 |
122.5 |
| N23 |
C52 |
C30 |
C27 |
338.9 |
344.1 |
| C30 |
C27 |
C24 |
H13 |
208.2 |
215.6 |
| C30 |
C27 |
C24 |
H14 |
86.2 |
93.5 |
| C24 |
C27 |
C30 |
H15 |
118.7 |
118.1 |
| C24 |
C27 |
C30 |
H16 |
241.2 |
241.9 |
| C52 |
C30 |
C27 |
H17 |
114.4 |
118.5 |
| N32 |
C30 |
C27 |
H17 |
238.5 |
237.5 |
| H15 |
C27 |
C30 |
H16 |
122.5 |
123.8 |
| N23 |
C52 |
C30 |
N32 |
214.1 |
225.3 |
| C52 |
C30 |
N32 |
H17 |
239.5 |
237.5 |
| N32 |
C30 |
C27 |
H15 |
38.2 |
25.5 |
| N32 |
C30 |
C27 |
H16 |
275.7 |
261.7 |
| C27 |
C30 |
N32 |
H17 |
121.1 |
122.5 |
| S34 |
N32 |
C30 |
H17 |
5.5 |
22.5 |
| O36 |
S34 |
N32 |
C37 |
115.7 |
246.4 |
| O35 |
S34 |
N32 |
C37 |
244.3 |
113.5 |
| N32 |
S34 |
C37 |
C39 |
232.0 |
115.0 |
| N32 |
S34 |
C37 |
H19 |
52.0 |
294.9 |
| N32 |
S34 |
O36 |
C37 |
244.5 |
114.1 |
| O36 |
S34 |
N32 |
H18 |
68.5 |
131.4 |
| O35 |
S34 |
O36 |
C37 |
124.2 |
237.0 |
| O36 |
S34 |
C37 |
C39 |
117.6 |
228.6 |
| O36 |
S34 |
C37 |
H19 |
297.7 |
48.5 |
| N32 |
S34 |
C37 |
O35 |
245.4 |
113.5 |
| C37 |
S34 |
N32 |
H18 |
312.9 |
245.0 |
| S34 |
C37 |
C39 |
C41 |
170.9 |
179.9 |
| C39 |
C37 |
S34 |
H19 |
180.0 |
180.1 |
| S34 |
C37 |
C39 |
H20 |
350.9 |
360.0 |
| N32 |
S34 |
O35 |
C37 |
115.5 |
245.9 |
| O35 |
S34 |
N32 |
H18 |
197.2 |
358.5 |
| O36 |
S34 |
O35 |
C37 |
235.7 |
123.0 |
| O35 |
S34 |
C37 |
C39 |
346.6 |
1.5 |
| O35 |
S34 |
C37 |
H19 |
166.6 |
181.4 |
| S34 |
C37 |
C39 |
H19 |
180.0 |
179.9 |
| C37 |
C39 |
C41 |
C42 |
197.0 |
180.0 |
| C41 |
C39 |
C37 |
H20 |
180.0 |
180.0 |
| C50 |
C41 |
C39 |
H20 |
197.2 |
179.8 |
| C50 |
C41 |
C42 |
H21 |
180.5 |
180.2 |
| C41 |
C39 |
C37 |
H19 |
350.9 |
0.0 |
| C37 |
C39 |
C41 |
H20 |
180.0 |
180.0 |
| C39 |
C41 |
C42 |
C44 |
180.6 |
180.0 |
| C39 |
C41 |
C42 |
H21 |
0.6 |
0.1 |
| C48 |
C46 |
C44 |
H22 |
180.3 |
180.0 |
| C42 |
C41 |
C39 |
H20 |
17.0 |
359.9 |
| C44 |
C42 |
C41 |
H21 |
180.0 |
179.9 |
| C41 |
C42 |
C44 |
H22 |
179.3 |
180.0 |
| CL1 |
C46 |
C44 |
H22 |
0.1 |
0.1 |
| C46 |
C44 |
C42 |
H21 |
179.3 |
180.0 |
| C42 |
C44 |
C46 |
H22 |
180.0 |
179.9 |
| C41 |
C42 |
C44 |
H21 |
180.0 |
180.1 |
| C46 |
C44 |
C42 |
H22 |
180.0 |
180.1 |
| C05 |
C01 |
H1 |
H2 |
120.0 |
120.0 |
| C05 |
C01 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C01 |
H1 |
H3 |
120.0 |
119.9 |
| C05 |
C01 |
H2 |
H1 |
240.0 |
240.0 |
| C05 |
C01 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C01 |
H2 |
H3 |
240.0 |
240.1 |
| C05 |
C01 |
H3 |
H1 |
120.0 |
120.0 |
| C05 |
C01 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C01 |
H3 |
H2 |
120.0 |
119.9 |
| C07 |
C05 |
H4 |
N23 |
118.7 |
120.0 |
| H4 |
C05 |
C01 |
H1 |
62.7 |
295.1 |
| H4 |
C05 |
C01 |
H2 |
182.6 |
55.1 |
| H4 |
C05 |
C01 |
H3 |
302.7 |
175.1 |
| H4 |
C05 |
N23 |
C24 |
203.9 |
360.0 |
| H4 |
C05 |
N23 |
C52 |
19.0 |
179.7 |
| C13 |
C10 |
H5 |
H6 |
119.6 |
239.4 |
| N09 |
C10 |
H5 |
H6 |
240.4 |
120.5 |
| C13 |
C10 |
H6 |
H5 |
240.4 |
120.6 |
| N09 |
C10 |
H6 |
H5 |
119.6 |
239.5 |
| O16 |
C13 |
H7 |
H8 |
119.2 |
239.8 |
| H7 |
C13 |
C10 |
H5 |
55.7 |
52.5 |
| H7 |
C13 |
C10 |
H6 |
175.4 |
292.0 |
| O16 |
C13 |
H8 |
H7 |
240.8 |
120.2 |
| H8 |
C13 |
C10 |
H5 |
296.2 |
172.6 |
| H8 |
C13 |
C10 |
H6 |
56.0 |
52.1 |
| C20 |
C17 |
H9 |
H10 |
241.1 |
240.0 |
| H9 |
C17 |
C20 |
H11 |
305.7 |
67.9 |
| H9 |
C17 |
C20 |
H12 |
65.5 |
307.4 |
| C20 |
C17 |
H10 |
H9 |
118.9 |
120.2 |
| H10 |
C17 |
C20 |
H11 |
186.4 |
307.8 |
| H10 |
C17 |
C20 |
H12 |
306.2 |
187.3 |
| H11 |
C20 |
C17 |
H9 |
305.7 |
67.9 |
| H11 |
C20 |
C17 |
H10 |
186.4 |
307.8 |
| C17 |
C20 |
H11 |
H12 |
119.6 |
239.5 |
| H12 |
C20 |
C17 |
H9 |
65.5 |
307.4 |
| H12 |
C20 |
C17 |
H10 |
306.2 |
187.3 |
| C17 |
C20 |
H12 |
H11 |
240.4 |
120.5 |
| H13 |
C24 |
N23 |
C52 |
140.5 |
136.3 |
| N23 |
C24 |
H13 |
C27 |
245.9 |
244.0 |
| N23 |
C24 |
H13 |
H14 |
123.0 |
122.0 |
| H13 |
C24 |
C27 |
C30 |
208.2 |
215.6 |
| C27 |
C24 |
H13 |
H14 |
237.1 |
238.0 |
| H13 |
C24 |
C27 |
H15 |
326.9 |
333.7 |
| H13 |
C24 |
C27 |
H16 |
89.5 |
97.5 |
| H14 |
C24 |
N23 |
C52 |
262.6 |
258.3 |
| N23 |
C24 |
H14 |
C27 |
114.1 |
116.0 |
| N23 |
C24 |
H14 |
H13 |
237.0 |
238.0 |
| H14 |
C24 |
C27 |
C30 |
86.2 |
93.5 |
| C27 |
C24 |
H14 |
H13 |
122.9 |
122.0 |
| H14 |
C24 |
C27 |
H15 |
204.9 |
211.7 |
| H14 |
C24 |
C27 |
H16 |
327.4 |
335.4 |
| C24 |
C27 |
H15 |
C30 |
247.2 |
247.6 |
| H15 |
C27 |
C24 |
H13 |
326.9 |
333.7 |
| H15 |
C27 |
C24 |
H14 |
204.9 |
211.7 |
| C24 |
C27 |
H15 |
H16 |
123.6 |
123.8 |
| C30 |
C27 |
H15 |
H16 |
236.4 |
236.2 |
| H15 |
C27 |
C30 |
H17 |
159.7 |
148.0 |
| C24 |
C27 |
H16 |
C30 |
112.8 |
112.4 |
| H16 |
C27 |
C24 |
H13 |
89.5 |
97.5 |
| H16 |
C27 |
C24 |
H14 |
327.4 |
335.4 |
| C24 |
C27 |
H16 |
H15 |
236.4 |
236.2 |
| C30 |
C27 |
H16 |
H15 |
123.6 |
123.8 |
| H16 |
C27 |
C30 |
H17 |
37.2 |
24.2 |
| H17 |
C30 |
C27 |
H15 |
159.7 |
148.0 |
| H17 |
C30 |
C27 |
H16 |
37.2 |
24.2 |
| H18 |
N32 |
C30 |
H17 |
126.9 |
202.5 |
| H18 |
N32 |
S34 |
C37 |
312.9 |
245.0 |
| H18 |
N32 |
S34 |
O35 |
197.2 |
358.5 |
| S34 |
C37 |
H19 |
C39 |
180.0 |
180.1 |
| H19 |
C37 |
C39 |
C41 |
350.9 |
0.0 |
| H19 |
C37 |
C39 |
H20 |
170.9 |
180.0 |
| C37 |
C39 |
H20 |
C41 |
180.0 |
180.0 |
| H20 |
C39 |
C37 |
H19 |
170.9 |
180.0 |
| H20 |
C39 |
C41 |
C42 |
17.0 |
359.9 |
| C41 |
C42 |
H21 |
C44 |
180.0 |
179.9 |
| H21 |
C42 |
C44 |
H22 |
359.3 |
359.9 |
| H22 |
C44 |
C42 |
H21 |
359.3 |
359.9 |
| H24 |
C50 |
C48 |
H23 |
359.6 |
359.8 |