Atom Nomenclature for 4O6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4O6

Atom Name (V3) Atom Name (V2)
C01 C1
C05 C2
C07 C3
O08 O1
N09 N1
C10 C4
C13 C5
O16 O2
C17 C6
C20 C7
N23 N2
C24 C8
C27 C9
C30 C10
N32 N3
S34 S1
O35 O3
O36 O4
C37 C11
C39 C12
C41 C13
C42 C14
C44 C15
C46 C16
CL1 CL1
C48 C17
C50 C18
C52 C19
O53 O5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24