Atom Nomenclature for 4NM

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4NM

Atom Name (V3) Atom Name (V2)
CAA CAA
SAH SAH
CAD CAD
CAF CAF
CAJ CAJ
NAK NAK
OAC OAC
OAB OAB
CAG CAG
C1 C1
CAE CAE
HAA1 1HAA
HAA2 2HAA
HAH HAH
HAD HAD
HAF HAF
HAG HAG
HAE HAE
HOA HOA