PDB Chemical Component 4ND
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4ND
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O1 |
1.246 |
1.235 |
C1 |
N5 |
1.359 |
1.422 |
C1 |
N4 |
|
1.392 |
N5 |
C3 |
1.510 |
1.444 |
N5 |
C9 |
1.496 |
1.439 |
C3 |
C4 |
1.426 |
1.372 |
C3 |
C8 |
1.431 |
1.371 |
C4 |
C5 |
1.422 |
1.394 |
C4 |
HC41 |
1.080 |
1.087 |
C5 |
C6 |
1.414 |
1.395 |
C5 |
HC51 |
1.080 |
1.086 |
C6 |
C7 |
1.422 |
1.395 |
C6 |
HC61 |
1.080 |
1.086 |
C7 |
C8 |
1.418 |
1.394 |
C7 |
HC71 |
1.080 |
1.086 |
C8 |
HC81 |
1.080 |
1.087 |
C9 |
C10 |
1.427 |
1.374 |
C9 |
C14 |
1.426 |
1.374 |
C10 |
C11 |
1.428 |
1.395 |
C10 |
H101 |
1.080 |
1.087 |
C11 |
C12 |
1.422 |
1.394 |
C11 |
H111 |
1.079 |
1.086 |
C12 |
C13 |
1.427 |
1.395 |
C12 |
H121 |
1.080 |
1.087 |
C13 |
C14 |
1.433 |
1.395 |
C13 |
H131 |
1.080 |
1.086 |
C14 |
H141 |
1.080 |
1.088 |
N4 |
N3 |
|
1.368 |
N4 |
HN41 |
|
1.013 |
N3 |
C15 |
|
1.375 |
N3 |
HN31 |
|
1.014 |
N2 |
C15 |
|
1.373 |
N2 |
HN21 |
|
1.014 |
N2 |
HN22 |
|
1.014 |
N1 |
C15 |
|
1.303 |
N1 |
HN11 |
|
1.026 |
Bond Angles for 4ND
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O1 |
C1 |
N5 |
121.2 |
123.6 |
O1 |
C1 |
N4 |
|
122.2 |
N5 |
C1 |
N4 |
|
114.2 |
C1 |
N5 |
C3 |
122.3 |
119.8 |
C1 |
N5 |
C9 |
118.9 |
122.5 |
C1 |
N4 |
N3 |
|
118.2 |
C1 |
N4 |
HN41 |
|
120.9 |
C3 |
N5 |
C9 |
118.7 |
117.5 |
N5 |
C3 |
C4 |
120.1 |
118.2 |
N5 |
C3 |
C8 |
121.0 |
118.3 |
N5 |
C9 |
C10 |
119.6 |
118.5 |
N5 |
C9 |
C14 |
120.4 |
118.4 |
C4 |
C3 |
C8 |
118.9 |
123.5 |
C3 |
C4 |
C5 |
120.8 |
118.3 |
C3 |
C4 |
HC41 |
119.6 |
122.4 |
C3 |
C8 |
C7 |
120.1 |
118.3 |
C3 |
C8 |
HC81 |
120.0 |
122.4 |
C5 |
C4 |
HC41 |
119.6 |
119.4 |
C4 |
C5 |
C6 |
120.0 |
120.0 |
C4 |
C5 |
HC51 |
120.0 |
120.0 |
C6 |
C5 |
HC51 |
120.0 |
120.0 |
C5 |
C6 |
C7 |
119.7 |
120.0 |
C5 |
C6 |
HC61 |
120.1 |
120.0 |
C7 |
C6 |
HC61 |
120.1 |
120.0 |
C6 |
C7 |
C8 |
120.5 |
120.0 |
C6 |
C7 |
HC71 |
119.7 |
120.0 |
C8 |
C7 |
HC71 |
119.7 |
120.0 |
C7 |
C8 |
HC81 |
119.9 |
119.4 |
C10 |
C9 |
C14 |
120.0 |
123.1 |
C9 |
C10 |
C11 |
120.0 |
118.5 |
C9 |
C10 |
H101 |
120.0 |
122.2 |
C9 |
C14 |
C13 |
120.0 |
118.5 |
C9 |
C14 |
H141 |
120.0 |
122.2 |
C11 |
C10 |
H101 |
120.0 |
119.3 |
C10 |
C11 |
C12 |
120.1 |
120.0 |
C10 |
C11 |
H111 |
119.9 |
120.0 |
C12 |
C11 |
H111 |
119.9 |
120.0 |
C11 |
C12 |
C13 |
120.1 |
120.0 |
C11 |
C12 |
H121 |
120.0 |
120.0 |
C13 |
C12 |
H121 |
119.9 |
120.0 |
C12 |
C13 |
C14 |
119.8 |
120.0 |
C12 |
C13 |
H131 |
120.1 |
120.0 |
C14 |
C13 |
H131 |
120.1 |
120.0 |
C13 |
C14 |
H141 |
120.0 |
119.3 |
N3 |
N4 |
HN41 |
|
120.8 |
N4 |
N3 |
C15 |
|
119.1 |
N4 |
N3 |
HN31 |
|
117.5 |
C15 |
N3 |
HN31 |
|
123.3 |
N3 |
C15 |
N2 |
|
112.8 |
N3 |
C15 |
N1 |
|
125.1 |
C15 |
N2 |
HN21 |
|
121.4 |
C15 |
N2 |
HN22 |
|
121.4 |
N2 |
C15 |
N1 |
|
122.2 |
HN21 |
N2 |
HN22 |
|
117.2 |
C15 |
N1 |
HN11 |
|
108.7 |
Torsion Angles for 4ND
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N5 |
C1 |
O1 |
N4 |
|
178.2 |
O1 |
C1 |
N5 |
C3 |
178.1 |
181.7 |
O1 |
C1 |
N5 |
C9 |
359.6 |
357.6 |
O1 |
C1 |
N4 |
N3 |
|
0.1 |
O1 |
C1 |
N4 |
HN41 |
|
180.0 |
O1 |
C1 |
N5 |
N4 |
|
181.6 |
N5 |
C1 |
N4 |
N3 |
|
181.7 |
N5 |
C1 |
N4 |
HN41 |
|
1.6 |
C3 |
N5 |
C1 |
C9 |
178.4 |
184.1 |
C1 |
N5 |
C3 |
C4 |
296.7 |
266.1 |
C1 |
N5 |
C3 |
C8 |
117.7 |
86.1 |
C1 |
N5 |
C9 |
C10 |
270.0 |
214.0 |
C1 |
N5 |
C9 |
C14 |
89.8 |
34.0 |
O1 |
C1 |
N4 |
N5 |
|
178.4 |
N4 |
C1 |
N5 |
C3 |
|
0.1 |
N4 |
C1 |
N5 |
C9 |
|
175.9 |
N3 |
N4 |
C1 |
HN41 |
|
180.0 |
C1 |
N4 |
N3 |
C15 |
|
210.0 |
C1 |
N4 |
N3 |
HN31 |
|
33.0 |
C3 |
N5 |
C1 |
N4 |
|
0.1 |
C1 |
N5 |
C3 |
C9 |
181.6 |
176.1 |
C3 |
N5 |
C9 |
C10 |
91.5 |
30.0 |
C3 |
N5 |
C9 |
C14 |
271.3 |
210.0 |
C4 |
C3 |
N5 |
C8 |
179.0 |
180.0 |
N5 |
C3 |
C4 |
C5 |
181.3 |
180.0 |
N5 |
C3 |
C4 |
HC41 |
1.3 |
0.1 |
N5 |
C3 |
C8 |
C7 |
178.7 |
180.0 |
N5 |
C3 |
C8 |
HC81 |
358.7 |
360.0 |
C9 |
N5 |
C1 |
N4 |
|
175.9 |
C1 |
N5 |
C9 |
C3 |
178.5 |
184.0 |
C9 |
N5 |
C3 |
C4 |
115.1 |
90.0 |
C9 |
N5 |
C3 |
C8 |
296.1 |
270.0 |
C10 |
C9 |
N5 |
C14 |
180.2 |
180.0 |
N5 |
C9 |
C10 |
C11 |
179.8 |
180.0 |
N5 |
C9 |
C10 |
H101 |
359.8 |
0.1 |
N5 |
C9 |
C14 |
C13 |
180.2 |
180.0 |
N5 |
C9 |
C14 |
H141 |
0.3 |
359.9 |
C4 |
C3 |
N5 |
C9 |
115.1 |
90.0 |
N5 |
C3 |
C4 |
C8 |
181.0 |
180.0 |
C4 |
C3 |
C8 |
C7 |
359.7 |
0.0 |
C4 |
C3 |
C8 |
HC81 |
179.7 |
180.0 |
C5 |
C4 |
C3 |
HC41 |
180.0 |
179.9 |
C3 |
C4 |
C5 |
C6 |
359.9 |
0.0 |
C3 |
C4 |
C5 |
HC51 |
179.9 |
180.0 |
C8 |
C3 |
N5 |
C9 |
296.1 |
270.0 |
N5 |
C3 |
C8 |
C4 |
179.0 |
180.0 |
C8 |
C3 |
C4 |
C5 |
0.3 |
360.0 |
C8 |
C3 |
C4 |
HC41 |
180.3 |
180.1 |
C6 |
C7 |
C8 |
C3 |
360.0 |
360.0 |
C3 |
C8 |
C7 |
HC71 |
180.0 |
180.0 |
C7 |
C8 |
C3 |
HC81 |
180.0 |
180.0 |
C5 |
C4 |
C3 |
C8 |
0.3 |
360.0 |
C3 |
C4 |
C5 |
HC41 |
180.0 |
180.1 |
C6 |
C5 |
C4 |
HC51 |
180.0 |
180.0 |
C4 |
C5 |
C6 |
C7 |
359.8 |
0.0 |
C4 |
C5 |
C6 |
HC61 |
179.8 |
180.0 |
HC41 |
C4 |
C3 |
C8 |
180.3 |
180.1 |
C3 |
C4 |
HC41 |
C5 |
180.0 |
179.9 |
HC41 |
C4 |
C5 |
C6 |
179.9 |
179.9 |
HC41 |
C4 |
C5 |
HC51 |
359.9 |
360.0 |
C6 |
C5 |
C4 |
HC41 |
179.9 |
179.9 |
C4 |
C5 |
C6 |
HC51 |
180.0 |
180.0 |
C7 |
C6 |
C5 |
HC61 |
180.0 |
180.0 |
C5 |
C6 |
C7 |
C8 |
0.2 |
360.0 |
C5 |
C6 |
C7 |
HC71 |
180.3 |
180.0 |
HC51 |
C5 |
C4 |
HC41 |
359.9 |
360.0 |
C4 |
C5 |
HC51 |
C6 |
180.0 |
180.0 |
HC51 |
C5 |
C6 |
C7 |
179.8 |
180.0 |
HC51 |
C5 |
C6 |
HC61 |
359.8 |
360.0 |
C3 |
C8 |
C7 |
C6 |
360.0 |
360.0 |
C7 |
C6 |
C5 |
HC51 |
179.8 |
180.0 |
C5 |
C6 |
C7 |
HC61 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
HC71 |
180.0 |
180.0 |
C6 |
C7 |
C8 |
HC81 |
180.0 |
180.0 |
HC61 |
C6 |
C5 |
HC51 |
359.8 |
360.0 |
C5 |
C6 |
HC61 |
C7 |
180.0 |
180.0 |
HC61 |
C6 |
C7 |
C8 |
180.2 |
180.0 |
HC61 |
C6 |
C7 |
HC71 |
0.3 |
0.0 |
C3 |
C8 |
C7 |
HC81 |
180.0 |
180.0 |
C8 |
C7 |
C6 |
HC61 |
180.2 |
180.0 |
C6 |
C7 |
C8 |
HC71 |
180.0 |
180.0 |
HC71 |
C7 |
C6 |
HC61 |
0.3 |
0.0 |
C6 |
C7 |
HC71 |
C8 |
180.0 |
180.0 |
HC71 |
C7 |
C8 |
HC81 |
360.0 |
360.0 |
C3 |
C8 |
HC81 |
C7 |
180.0 |
180.0 |
HC81 |
C8 |
C7 |
HC71 |
360.0 |
360.0 |
N5 |
C9 |
C10 |
C14 |
179.8 |
180.0 |
C10 |
C9 |
C14 |
C13 |
0.0 |
0.0 |
C10 |
C9 |
C14 |
H141 |
180.0 |
180.0 |
C11 |
C10 |
C9 |
H101 |
180.0 |
179.9 |
C9 |
C10 |
C11 |
C12 |
360.0 |
0.1 |
C9 |
C10 |
C11 |
H111 |
180.0 |
180.0 |
N5 |
C9 |
C14 |
C10 |
180.2 |
180.0 |
C14 |
C9 |
C10 |
C11 |
0.0 |
360.0 |
C14 |
C9 |
C10 |
H101 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
C9 |
360.0 |
359.9 |
C9 |
C14 |
C13 |
H131 |
180.0 |
180.0 |
C13 |
C14 |
C9 |
H141 |
180.0 |
180.1 |
C11 |
C10 |
C9 |
C14 |
0.0 |
360.0 |
C9 |
C10 |
C11 |
H101 |
180.0 |
180.1 |
C12 |
C11 |
C10 |
H111 |
180.0 |
180.1 |
C10 |
C11 |
C12 |
C13 |
0.0 |
359.9 |
C10 |
C11 |
C12 |
H121 |
180.0 |
180.0 |
H101 |
C10 |
C9 |
C14 |
180.0 |
180.0 |
C9 |
C10 |
H101 |
C11 |
180.0 |
179.9 |
H101 |
C10 |
C11 |
C12 |
179.9 |
180.0 |
H101 |
C10 |
C11 |
H111 |
360.0 |
359.9 |
C12 |
C11 |
C10 |
H101 |
179.9 |
180.0 |
C10 |
C11 |
C12 |
H111 |
180.0 |
179.9 |
C13 |
C12 |
C11 |
H121 |
180.0 |
179.9 |
C11 |
C12 |
C13 |
C14 |
360.0 |
0.1 |
C11 |
C12 |
C13 |
H131 |
180.0 |
180.0 |
H111 |
C11 |
C10 |
H101 |
360.0 |
359.9 |
C10 |
C11 |
H111 |
C12 |
180.0 |
180.1 |
H111 |
C11 |
C12 |
C13 |
180.0 |
180.0 |
H111 |
C11 |
C12 |
H121 |
0.0 |
0.1 |
C9 |
C14 |
C13 |
C12 |
360.0 |
359.9 |
C13 |
C12 |
C11 |
H111 |
180.0 |
180.0 |
C11 |
C12 |
C13 |
H121 |
180.0 |
180.1 |
C14 |
C13 |
C12 |
H131 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
H141 |
180.0 |
180.0 |
H121 |
C12 |
C11 |
H111 |
0.0 |
0.1 |
C11 |
C12 |
H121 |
C13 |
180.0 |
179.9 |
H121 |
C12 |
C13 |
C14 |
180.0 |
180.0 |
H121 |
C12 |
C13 |
H131 |
360.0 |
359.9 |
C9 |
C14 |
C13 |
H141 |
180.0 |
179.9 |
C14 |
C13 |
C12 |
H121 |
180.0 |
180.0 |
C12 |
C13 |
C14 |
H131 |
180.0 |
179.9 |
H131 |
C13 |
C12 |
H121 |
360.0 |
359.9 |
C12 |
C13 |
H131 |
C14 |
180.0 |
180.1 |
H131 |
C13 |
C14 |
H141 |
0.0 |
0.1 |
C9 |
C14 |
H141 |
C13 |
180.0 |
180.1 |
H141 |
C14 |
C13 |
H131 |
0.0 |
0.1 |
C1 |
N4 |
N3 |
HN41 |
|
180.0 |
C15 |
N3 |
N4 |
HN31 |
|
177.0 |
N4 |
N3 |
C15 |
N2 |
|
183.0 |
N4 |
N3 |
C15 |
N1 |
|
3.2 |
C1 |
N4 |
HN41 |
N3 |
|
180.0 |
HN41 |
N4 |
N3 |
C15 |
|
30.0 |
HN41 |
N4 |
N3 |
HN31 |
|
213.0 |
C15 |
N3 |
N4 |
HN41 |
|
30.0 |
N4 |
N3 |
C15 |
HN31 |
|
183.1 |
N3 |
C15 |
N2 |
HN21 |
|
179.9 |
N3 |
C15 |
N2 |
HN22 |
|
0.1 |
N2 |
C15 |
N3 |
N1 |
|
179.9 |
N3 |
C15 |
N1 |
HN11 |
|
359.9 |
HN31 |
N3 |
N4 |
HN41 |
|
213.0 |
N4 |
N3 |
HN31 |
C15 |
|
176.9 |
HN31 |
N3 |
C15 |
N2 |
|
359.9 |
HN31 |
N3 |
C15 |
N1 |
|
180.0 |
N2 |
C15 |
N3 |
HN31 |
|
359.9 |
N3 |
C15 |
N2 |
N1 |
|
180.1 |
HN21 |
N2 |
C15 |
HN22 |
|
179.8 |
N2 |
C15 |
N1 |
HN11 |
|
180.0 |
C15 |
N2 |
HN21 |
HN22 |
|
180.1 |
HN21 |
N2 |
C15 |
N1 |
|
359.8 |
C15 |
N2 |
HN22 |
HN21 |
|
179.9 |
HN22 |
N2 |
C15 |
N1 |
|
180.0 |
N1 |
C15 |
N3 |
HN31 |
|
180.0 |
N3 |
C15 |
N1 |
N2 |
|
179.9 |
N1 |
C15 |
N2 |
HN21 |
|
359.8 |
N1 |
C15 |
N2 |
HN22 |
|
180.0 |