PDB Chemical Component 4ND

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4ND

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1 1.246 1.235
C1 N5 1.359 1.422
C1 N4   1.392
N5 C3 1.510 1.444
N5 C9 1.496 1.439
C3 C4 1.426 1.372
C3 C8 1.431 1.371
C4 C5 1.422 1.394
C4 HC41 1.080 1.087
C5 C6 1.414 1.395
C5 HC51 1.080 1.086
C6 C7 1.422 1.395
C6 HC61 1.080 1.086
C7 C8 1.418 1.394
C7 HC71 1.080 1.086
C8 HC81 1.080 1.087
C9 C10 1.427 1.374
C9 C14 1.426 1.374
C10 C11 1.428 1.395
C10 H101 1.080 1.087
C11 C12 1.422 1.394
C11 H111 1.079 1.086
C12 C13 1.427 1.395
C12 H121 1.080 1.087
C13 C14 1.433 1.395
C13 H131 1.080 1.086
C14 H141 1.080 1.088
N4 N3   1.368
N4 HN41   1.013
N3 C15   1.375
N3 HN31   1.014
N2 C15   1.373
N2 HN21   1.014
N2 HN22   1.014
N1 C15   1.303
N1 HN11   1.026

Bond Angles for 4ND

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1 C1 N5 121.2 123.6
O1 C1 N4   122.2
N5 C1 N4   114.2
C1 N5 C3 122.3 119.8
C1 N5 C9 118.9 122.5
C1 N4 N3   118.2
C1 N4 HN41   120.9
C3 N5 C9 118.7 117.5
N5 C3 C4 120.1 118.2
N5 C3 C8 121.0 118.3
N5 C9 C10 119.6 118.5
N5 C9 C14 120.4 118.4
C4 C3 C8 118.9 123.5
C3 C4 C5 120.8 118.3
C3 C4 HC41 119.6 122.4
C3 C8 C7 120.1 118.3
C3 C8 HC81 120.0 122.4
C5 C4 HC41 119.6 119.4
C4 C5 C6 120.0 120.0
C4 C5 HC51 120.0 120.0
C6 C5 HC51 120.0 120.0
C5 C6 C7 119.7 120.0
C5 C6 HC61 120.1 120.0
C7 C6 HC61 120.1 120.0
C6 C7 C8 120.5 120.0
C6 C7 HC71 119.7 120.0
C8 C7 HC71 119.7 120.0
C7 C8 HC81 119.9 119.4
C10 C9 C14 120.0 123.1
C9 C10 C11 120.0 118.5
C9 C10 H101 120.0 122.2
C9 C14 C13 120.0 118.5
C9 C14 H141 120.0 122.2
C11 C10 H101 120.0 119.3
C10 C11 C12 120.1 120.0
C10 C11 H111 119.9 120.0
C12 C11 H111 119.9 120.0
C11 C12 C13 120.1 120.0
C11 C12 H121 120.0 120.0
C13 C12 H121 119.9 120.0
C12 C13 C14 119.8 120.0
C12 C13 H131 120.1 120.0
C14 C13 H131 120.1 120.0
C13 C14 H141 120.0 119.3
N3 N4 HN41   120.8
N4 N3 C15   119.1
N4 N3 HN31   117.5
C15 N3 HN31   123.3
N3 C15 N2   112.8
N3 C15 N1   125.1
C15 N2 HN21   121.4
C15 N2 HN22   121.4
N2 C15 N1   122.2
HN21 N2 HN22   117.2
C15 N1 HN11   108.7

Torsion Angles for 4ND

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N5 C1 O1 N4   178.2
O1 C1 N5 C3 178.1 181.7
O1 C1 N5 C9 359.6 357.6
O1 C1 N4 N3   0.1
O1 C1 N4 HN41   180.0
O1 C1 N5 N4   181.6
N5 C1 N4 N3   181.7
N5 C1 N4 HN41   1.6
C3 N5 C1 C9 178.4 184.1
C1 N5 C3 C4 296.7 266.1
C1 N5 C3 C8 117.7 86.1
C1 N5 C9 C10 270.0 214.0
C1 N5 C9 C14 89.8 34.0
O1 C1 N4 N5   178.4
N4 C1 N5 C3   0.1
N4 C1 N5 C9   175.9
N3 N4 C1 HN41   180.0
C1 N4 N3 C15   210.0
C1 N4 N3 HN31   33.0
C3 N5 C1 N4   0.1
C1 N5 C3 C9 181.6 176.1
C3 N5 C9 C10 91.5 30.0
C3 N5 C9 C14 271.3 210.0
C4 C3 N5 C8 179.0 180.0
N5 C3 C4 C5 181.3 180.0
N5 C3 C4 HC41 1.3 0.1
N5 C3 C8 C7 178.7 180.0
N5 C3 C8 HC81 358.7 360.0
C9 N5 C1 N4   175.9
C1 N5 C9 C3 178.5 184.0
C9 N5 C3 C4 115.1 90.0
C9 N5 C3 C8 296.1 270.0
C10 C9 N5 C14 180.2 180.0
N5 C9 C10 C11 179.8 180.0
N5 C9 C10 H101 359.8 0.1
N5 C9 C14 C13 180.2 180.0
N5 C9 C14 H141 0.3 359.9
C4 C3 N5 C9 115.1 90.0
N5 C3 C4 C8 181.0 180.0
C4 C3 C8 C7 359.7 0.0
C4 C3 C8 HC81 179.7 180.0
C5 C4 C3 HC41 180.0 179.9
C3 C4 C5 C6 359.9 0.0
C3 C4 C5 HC51 179.9 180.0
C8 C3 N5 C9 296.1 270.0
N5 C3 C8 C4 179.0 180.0
C8 C3 C4 C5 0.3 360.0
C8 C3 C4 HC41 180.3 180.1
C6 C7 C8 C3 360.0 360.0
C3 C8 C7 HC71 180.0 180.0
C7 C8 C3 HC81 180.0 180.0
C5 C4 C3 C8 0.3 360.0
C3 C4 C5 HC41 180.0 180.1
C6 C5 C4 HC51 180.0 180.0
C4 C5 C6 C7 359.8 0.0
C4 C5 C6 HC61 179.8 180.0
HC41 C4 C3 C8 180.3 180.1
C3 C4 HC41 C5 180.0 179.9
HC41 C4 C5 C6 179.9 179.9
HC41 C4 C5 HC51 359.9 360.0
C6 C5 C4 HC41 179.9 179.9
C4 C5 C6 HC51 180.0 180.0
C7 C6 C5 HC61 180.0 180.0
C5 C6 C7 C8 0.2 360.0
C5 C6 C7 HC71 180.3 180.0
HC51 C5 C4 HC41 359.9 360.0
C4 C5 HC51 C6 180.0 180.0
HC51 C5 C6 C7 179.8 180.0
HC51 C5 C6 HC61 359.8 360.0
C3 C8 C7 C6 360.0 360.0
C7 C6 C5 HC51 179.8 180.0
C5 C6 C7 HC61 180.0 180.0
C8 C7 C6 HC71 180.0 180.0
C6 C7 C8 HC81 180.0 180.0
HC61 C6 C5 HC51 359.8 360.0
C5 C6 HC61 C7 180.0 180.0
HC61 C6 C7 C8 180.2 180.0
HC61 C6 C7 HC71 0.3 0.0
C3 C8 C7 HC81 180.0 180.0
C8 C7 C6 HC61 180.2 180.0
C6 C7 C8 HC71 180.0 180.0
HC71 C7 C6 HC61 0.3 0.0
C6 C7 HC71 C8 180.0 180.0
HC71 C7 C8 HC81 360.0 360.0
C3 C8 HC81 C7 180.0 180.0
HC81 C8 C7 HC71 360.0 360.0
N5 C9 C10 C14 179.8 180.0
C10 C9 C14 C13 0.0 0.0
C10 C9 C14 H141 180.0 180.0
C11 C10 C9 H101 180.0 179.9
C9 C10 C11 C12 360.0 0.1
C9 C10 C11 H111 180.0 180.0
N5 C9 C14 C10 180.2 180.0
C14 C9 C10 C11 0.0 360.0
C14 C9 C10 H101 180.0 180.0
C12 C13 C14 C9 360.0 359.9
C9 C14 C13 H131 180.0 180.0
C13 C14 C9 H141 180.0 180.1
C11 C10 C9 C14 0.0 360.0
C9 C10 C11 H101 180.0 180.1
C12 C11 C10 H111 180.0 180.1
C10 C11 C12 C13 0.0 359.9
C10 C11 C12 H121 180.0 180.0
H101 C10 C9 C14 180.0 180.0
C9 C10 H101 C11 180.0 179.9
H101 C10 C11 C12 179.9 180.0
H101 C10 C11 H111 360.0 359.9
C12 C11 C10 H101 179.9 180.0
C10 C11 C12 H111 180.0 179.9
C13 C12 C11 H121 180.0 179.9
C11 C12 C13 C14 360.0 0.1
C11 C12 C13 H131 180.0 180.0
H111 C11 C10 H101 360.0 359.9
C10 C11 H111 C12 180.0 180.1
H111 C11 C12 C13 180.0 180.0
H111 C11 C12 H121 0.0 0.1
C9 C14 C13 C12 360.0 359.9
C13 C12 C11 H111 180.0 180.0
C11 C12 C13 H121 180.0 180.1
C14 C13 C12 H131 180.0 180.1
C12 C13 C14 H141 180.0 180.0
H121 C12 C11 H111 0.0 0.1
C11 C12 H121 C13 180.0 179.9
H121 C12 C13 C14 180.0 180.0
H121 C12 C13 H131 360.0 359.9
C9 C14 C13 H141 180.0 179.9
C14 C13 C12 H121 180.0 180.0
C12 C13 C14 H131 180.0 179.9
H131 C13 C12 H121 360.0 359.9
C12 C13 H131 C14 180.0 180.1
H131 C13 C14 H141 0.0 0.1
C9 C14 H141 C13 180.0 180.1
H141 C14 C13 H131 0.0 0.1
C1 N4 N3 HN41   180.0
C15 N3 N4 HN31   177.0
N4 N3 C15 N2   183.0
N4 N3 C15 N1   3.2
C1 N4 HN41 N3   180.0
HN41 N4 N3 C15   30.0
HN41 N4 N3 HN31   213.0
C15 N3 N4 HN41   30.0
N4 N3 C15 HN31   183.1
N3 C15 N2 HN21   179.9
N3 C15 N2 HN22   0.1
N2 C15 N3 N1   179.9
N3 C15 N1 HN11   359.9
HN31 N3 N4 HN41   213.0
N4 N3 HN31 C15   176.9
HN31 N3 C15 N2   359.9
HN31 N3 C15 N1   180.0
N2 C15 N3 HN31   359.9
N3 C15 N2 N1   180.1
HN21 N2 C15 HN22   179.8
N2 C15 N1 HN11   180.0
C15 N2 HN21 HN22   180.1
HN21 N2 C15 N1   359.8
C15 N2 HN22 HN21   179.9
HN22 N2 C15 N1   180.0
N1 C15 N3 HN31   180.0
N3 C15 N1 N2   179.9
N1 C15 N2 HN21   359.8
N1 C15 N2 HN22   180.0