Atom Nomenclature for 4MG

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4MG

Atom Name (V3) Atom Name (V2)
CAD CAD
NBD NBD
CAW CAW
CAC CAC
CAV CAV
CAB CAB
CAZ CAZ
CAJ CAJ
CBA CBA
CAI CAI
CAH CAH
CAS CAS
NAP NAP
C2 C2
N3 N3
N1 N1
C6 C6
C5 C5
C4 C4
NBE NBE
CAK CAK
NAO NAO
CAT CAT
CAA CAA
CAU CAU
CAL CAL
NBC NBC
CAN CAN
CAM CAM
CBB CBB
OAE OAE
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28