PDB Chemical Component 4M1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4M1
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C22 |
C21 |
1.377 |
1.381 |
C22 |
C23 |
1.387 |
1.382 |
C21 |
C20 |
1.379 |
1.383 |
C23 |
C18 |
1.389 |
1.383 |
C20 |
C19 |
1.388 |
1.383 |
C18 |
C19 |
1.390 |
1.382 |
C18 |
C7 |
1.525 |
1.506 |
O |
C9 |
1.230 |
1.216 |
C7 |
C8 |
1.556 |
1.529 |
C7 |
C6 |
1.509 |
1.507 |
C8 |
N2 |
1.453 |
1.465 |
C9 |
N2 |
1.335 |
1.348 |
C9 |
C10 |
1.504 |
1.475 |
CL |
C15 |
1.734 |
1.736 |
C6 |
N1 |
1.360 |
1.361 |
C6 |
N |
1.350 |
1.301 |
C10 |
C15 |
1.392 |
1.399 |
C10 |
C11 |
1.396 |
1.399 |
C15 |
C14 |
1.382 |
1.379 |
N1 |
C3 |
1.391 |
1.380 |
CL1 |
C11 |
1.730 |
1.736 |
C11 |
C12 |
1.384 |
1.379 |
C14 |
C13 |
1.394 |
1.390 |
N |
C4 |
1.381 |
1.358 |
C12 |
C13 |
1.394 |
1.389 |
C13 |
N3 |
1.434 |
1.399 |
C3 |
C4 |
1.392 |
1.405 |
C3 |
C2 |
1.387 |
1.389 |
C4 |
C5 |
1.393 |
1.398 |
C16 |
N3 |
1.361 |
1.363 |
C16 |
N4 |
1.301 |
1.305 |
N3 |
C17 |
1.359 |
1.364 |
C2 |
C1 |
1.392 |
1.379 |
N4 |
N5 |
1.390 |
1.285 |
C5 |
C |
1.391 |
1.366 |
C17 |
N5 |
1.301 |
1.305 |
C1 |
C |
1.411 |
1.388 |
C1 |
C24 |
1.505 |
1.507 |
C |
C25 |
1.508 |
1.507 |
C21 |
H1 |
1.080 |
1.080 |
C22 |
H2 |
1.080 |
1.079 |
C20 |
H3 |
1.080 |
1.080 |
C23 |
H4 |
1.080 |
1.081 |
C19 |
H5 |
1.080 |
1.080 |
C2 |
H6 |
1.080 |
1.079 |
C5 |
H7 |
1.080 |
1.080 |
C12 |
H8 |
1.080 |
1.080 |
C14 |
H9 |
1.080 |
1.079 |
C17 |
H10 |
1.080 |
1.081 |
C16 |
H11 |
1.080 |
1.080 |
C24 |
H14 |
1.100 |
1.090 |
C24 |
H12 |
1.101 |
1.090 |
C24 |
H13 |
1.100 |
1.090 |
C25 |
H17 |
1.101 |
1.090 |
C25 |
H16 |
1.100 |
1.090 |
C25 |
H15 |
1.100 |
1.090 |
C8 |
H19 |
1.100 |
1.090 |
C8 |
H18 |
1.100 |
1.090 |
C7 |
H20 |
1.100 |
1.090 |
N1 |
H21 |
1.000 |
0.970 |
N2 |
H23 |
1.000 |
0.970 |
Bond Angles for 4M1
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C22 |
C21 |
C20 |
119.6 |
120.0 |
C22 |
C21 |
H1 |
120.2 |
120.0 |
C22 |
C23 |
C18 |
120.8 |
120.0 |
C23 |
C22 |
H2 |
119.8 |
120.0 |
C22 |
C23 |
H4 |
119.6 |
120.0 |
C21 |
C20 |
C19 |
120.3 |
119.9 |
C20 |
C21 |
H1 |
120.2 |
119.9 |
C21 |
C20 |
H3 |
119.9 |
120.0 |
C23 |
C18 |
C19 |
118.4 |
120.0 |
C23 |
C18 |
C7 |
120.0 |
120.0 |
C18 |
C23 |
H4 |
119.6 |
120.0 |
C19 |
C20 |
H3 |
119.9 |
120.0 |
C20 |
C19 |
H5 |
119.7 |
120.0 |
C18 |
C19 |
H5 |
119.6 |
120.0 |
C18 |
C7 |
C8 |
110.6 |
109.5 |
C18 |
C7 |
C6 |
111.5 |
109.5 |
C18 |
C7 |
H20 |
108.1 |
109.5 |
C7 |
C8 |
N2 |
108.9 |
109.5 |
C7 |
C8 |
H19 |
109.6 |
109.5 |
C7 |
C8 |
H18 |
109.6 |
109.5 |
C7 |
C6 |
N1 |
125.4 |
125.0 |
C7 |
C6 |
N |
127.9 |
125.0 |
C9 |
N2 |
C8 |
122.5 |
120.0 |
N2 |
C8 |
H19 |
109.6 |
109.4 |
N2 |
C8 |
H18 |
109.6 |
109.5 |
C8 |
N2 |
H23 |
118.8 |
120.0 |
C9 |
N2 |
H23 |
118.7 |
120.0 |
N1 |
C6 |
N |
106.8 |
110.1 |
C6 |
N1 |
H21 |
125.1 |
126.3 |
C11 |
C10 |
C15 |
117.1 |
119.8 |
C15 |
C14 |
H9 |
120.1 |
119.9 |
C11 |
C12 |
H8 |
120.2 |
119.9 |
C12 |
C13 |
C14 |
119.5 |
120.2 |
C14 |
C13 |
N3 |
119.2 |
119.8 |
C13 |
C14 |
H9 |
120.2 |
120.0 |
C12 |
C13 |
N3 |
121.3 |
119.9 |
C13 |
C12 |
H8 |
120.2 |
120.0 |
C16 |
N3 |
C13 |
127.9 |
127.2 |
C3 |
C2 |
H6 |
119.0 |
120.1 |
C4 |
C5 |
H7 |
120.0 |
120.1 |
N4 |
C16 |
N3 |
110.9 |
107.2 |
N3 |
C16 |
H11 |
124.6 |
126.4 |
C16 |
N4 |
N5 |
107.0 |
109.9 |
N4 |
C16 |
H11 |
124.6 |
126.3 |
N3 |
C17 |
H10 |
124.5 |
126.4 |
C2 |
C1 |
C |
119.4 |
120.5 |
C2 |
C1 |
C24 |
119.4 |
119.8 |
C1 |
C2 |
H6 |
119.0 |
120.2 |
C5 |
C |
C1 |
119.1 |
120.7 |
C5 |
C |
C25 |
119.6 |
119.7 |
C |
C5 |
H7 |
120.0 |
120.1 |
N5 |
C17 |
H10 |
124.5 |
126.4 |
C |
C1 |
C24 |
121.1 |
119.8 |
C1 |
C |
C25 |
121.0 |
119.7 |
C1 |
C24 |
H14 |
109.5 |
109.5 |
C1 |
C24 |
H12 |
109.5 |
109.5 |
C1 |
C24 |
H13 |
109.5 |
109.5 |
C |
C25 |
H17 |
109.5 |
109.4 |
C |
C25 |
H16 |
109.4 |
109.5 |
C |
C25 |
H15 |
109.4 |
109.5 |
H14 |
C24 |
H12 |
109.5 |
109.5 |
H14 |
C24 |
H13 |
109.5 |
109.5 |
H12 |
C24 |
H13 |
109.5 |
109.5 |
H17 |
C25 |
H16 |
109.5 |
109.5 |
H17 |
C25 |
H15 |
109.5 |
109.4 |
H16 |
C25 |
H15 |
109.5 |
109.5 |
H19 |
C8 |
H18 |
109.5 |
109.4 |
Torsion Angles for 4M1
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C22 |
C21 |
C20 |
C19 |
359.0 |
359.7 |
C20 |
C21 |
C22 |
H1 |
180.0 |
180.2 |
C22 |
C21 |
C20 |
H3 |
179.0 |
179.7 |
C23 |
C22 |
C21 |
C20 |
359.9 |
360.0 |
C23 |
C22 |
C21 |
H1 |
179.9 |
179.7 |
C22 |
C23 |
C18 |
C19 |
0.3 |
0.3 |
C22 |
C23 |
C18 |
C7 |
180.1 |
180.0 |
C18 |
C23 |
C22 |
H4 |
180.0 |
180.0 |
C22 |
C21 |
C20 |
H1 |
180.0 |
179.8 |
C19 |
C20 |
C21 |
H3 |
180.0 |
180.0 |
C21 |
C20 |
C19 |
H5 |
181.8 |
180.0 |
C18 |
C23 |
C22 |
H2 |
180.4 |
180.0 |
C22 |
C23 |
C18 |
H4 |
180.0 |
180.0 |
C23 |
C18 |
C19 |
H5 |
178.5 |
180.0 |
C23 |
C18 |
C7 |
C8 |
266.4 |
240.0 |
C23 |
C18 |
C7 |
C6 |
143.1 |
120.0 |
C23 |
C18 |
C7 |
H20 |
24.1 |
0.0 |
C19 |
C20 |
C21 |
H1 |
179.0 |
180.0 |
C21 |
C20 |
C19 |
H3 |
180.0 |
180.0 |
C23 |
C18 |
C19 |
C20 |
358.5 |
359.4 |
C18 |
C19 |
C20 |
H5 |
180.0 |
180.6 |
C23 |
C18 |
C19 |
C7 |
179.8 |
179.7 |
C19 |
C18 |
C23 |
H4 |
180.3 |
180.3 |
C18 |
C19 |
C20 |
H3 |
181.8 |
180.6 |
C20 |
C19 |
C18 |
H5 |
180.0 |
179.4 |
C23 |
C18 |
C7 |
C19 |
180.2 |
180.3 |
C7 |
C18 |
C23 |
H4 |
0.1 |
360.0 |
C7 |
C18 |
C19 |
H5 |
358.8 |
0.4 |
C18 |
C7 |
C8 |
N2 |
175.3 |
65.0 |
C18 |
C7 |
C8 |
H19 |
295.3 |
185.0 |
C18 |
C7 |
C8 |
H18 |
55.4 |
305.0 |
C18 |
C7 |
C6 |
N1 |
264.3 |
35.1 |
C18 |
C7 |
C6 |
N |
83.8 |
215.6 |
O |
C9 |
N2 |
H23 |
181.0 |
180.0 |
C18 |
C7 |
C8 |
C6 |
236.1 |
240.0 |
C18 |
C7 |
C8 |
H20 |
118.0 |
120.0 |
C8 |
C7 |
C6 |
N1 |
140.9 |
275.0 |
C8 |
C7 |
C6 |
N |
320.4 |
95.5 |
C9 |
N2 |
C8 |
C7 |
267.7 |
180.1 |
N2 |
C8 |
C7 |
H19 |
240.1 |
240.0 |
N2 |
C8 |
C7 |
H18 |
119.9 |
120.0 |
C7 |
C8 |
N2 |
H23 |
87.7 |
360.0 |
H19 |
C8 |
C7 |
H18 |
239.8 |
240.0 |
C18 |
C7 |
C6 |
C8 |
123.4 |
120.0 |
C18 |
C7 |
C6 |
H20 |
241.2 |
240.0 |
N1 |
C6 |
C7 |
N |
180.5 |
179.5 |
C7 |
C6 |
N1 |
H21 |
0.4 |
0.4 |
C7 |
C8 |
N2 |
H19 |
119.9 |
120.1 |
C7 |
C8 |
N2 |
H18 |
240.1 |
239.9 |
C9 |
N2 |
C8 |
H23 |
180.0 |
180.1 |
H19 |
C8 |
N2 |
H18 |
120.2 |
119.9 |
C7 |
C8 |
N2 |
C9 |
267.7 |
180.1 |
C9 |
N2 |
C8 |
H19 |
147.8 |
60.0 |
C9 |
N2 |
C8 |
H18 |
27.6 |
300.1 |
C8 |
N2 |
C9 |
H23 |
180.0 |
179.9 |
CL |
C15 |
C14 |
H9 |
5.0 |
0.3 |
C7 |
C6 |
N1 |
N |
179.6 |
180.4 |
C7 |
C6 |
N |
N1 |
180.4 |
179.6 |
N |
C6 |
N1 |
H21 |
180.8 |
180.0 |
C10 |
C15 |
C14 |
H9 |
182.4 |
179.5 |
C10 |
C11 |
C12 |
H8 |
180.9 |
180.3 |
C15 |
C14 |
C13 |
N3 |
179.0 |
180.1 |
C13 |
C14 |
C15 |
H9 |
180.0 |
179.9 |
N1 |
C3 |
C2 |
H6 |
359.5 |
359.6 |
CL1 |
C11 |
C12 |
H8 |
3.4 |
0.2 |
C11 |
C12 |
C13 |
N3 |
179.4 |
180.2 |
C13 |
C12 |
C11 |
H8 |
180.0 |
179.7 |
C15 |
C14 |
C13 |
H9 |
180.0 |
180.1 |
C12 |
C13 |
C14 |
N3 |
180.5 |
180.0 |
C14 |
C13 |
C12 |
H8 |
178.9 |
180.0 |
C16 |
N3 |
C13 |
C14 |
38.6 |
360.0 |
N |
C4 |
C5 |
H7 |
359.2 |
359.6 |
C11 |
C12 |
C13 |
H8 |
180.0 |
180.3 |
C14 |
C13 |
C12 |
N3 |
179.5 |
180.0 |
C12 |
C13 |
C14 |
H9 |
179.5 |
179.9 |
C16 |
N3 |
C13 |
C12 |
218.1 |
180.0 |
C12 |
C13 |
N3 |
C14 |
179.5 |
180.0 |
N3 |
C13 |
C14 |
H9 |
359.0 |
359.9 |
N3 |
C13 |
C12 |
H8 |
359.4 |
359.9 |
N4 |
C16 |
N3 |
C13 |
180.7 |
180.0 |
C13 |
N3 |
C16 |
H11 |
0.7 |
0.0 |
C13 |
N3 |
C17 |
H10 |
358.6 |
0.2 |
C4 |
C3 |
C2 |
H6 |
179.8 |
180.3 |
C3 |
C4 |
C5 |
H7 |
179.3 |
180.2 |
C3 |
C2 |
C1 |
C24 |
176.1 |
180.3 |
C1 |
C2 |
C3 |
H6 |
180.0 |
179.7 |
C4 |
C5 |
C |
C25 |
187.1 |
179.5 |
C |
C5 |
C4 |
H7 |
180.0 |
180.6 |
C14 |
C13 |
N3 |
C16 |
38.6 |
360.0 |
C12 |
C13 |
N3 |
C16 |
218.1 |
180.0 |
N3 |
C16 |
N4 |
N5 |
0.6 |
359.8 |
N4 |
C16 |
N3 |
H11 |
180.0 |
180.0 |
C16 |
N3 |
C17 |
H10 |
179.2 |
179.9 |
N3 |
C16 |
N4 |
H11 |
180.0 |
180.0 |
C14 |
C13 |
N3 |
C17 |
219.2 |
179.6 |
C12 |
C13 |
N3 |
C17 |
38.8 |
359.6 |
N5 |
C17 |
N3 |
H10 |
180.0 |
179.8 |
C3 |
C2 |
C1 |
H6 |
180.0 |
180.3 |
C5 |
C |
C1 |
C2 |
359.8 |
360.0 |
C |
C1 |
C2 |
C24 |
184.0 |
180.0 |
C2 |
C1 |
C |
C25 |
173.2 |
180.0 |
C2 |
C1 |
C24 |
H14 |
91.9 |
90.0 |
C2 |
C1 |
C24 |
H12 |
211.9 |
210.0 |
C2 |
C1 |
C24 |
H13 |
331.9 |
330.0 |
N5 |
N4 |
C16 |
N3 |
0.6 |
359.8 |
N5 |
N4 |
C16 |
H11 |
180.5 |
179.7 |
N4 |
N5 |
C17 |
H10 |
181.2 |
180.0 |
C4 |
C5 |
C |
H7 |
180.0 |
179.4 |
C2 |
C1 |
C |
C5 |
359.8 |
360.0 |
C5 |
C |
C1 |
C24 |
183.8 |
180.0 |
C1 |
C |
C5 |
C25 |
173.5 |
180.0 |
C5 |
C |
C25 |
H17 |
86.7 |
90.0 |
C5 |
C |
C25 |
H16 |
206.8 |
210.0 |
C5 |
C |
C25 |
H15 |
326.8 |
330.0 |
C16 |
N4 |
N5 |
C17 |
358.9 |
360.0 |
N3 |
C17 |
N5 |
H10 |
180.0 |
180.2 |
C2 |
C1 |
C |
C24 |
176.0 |
180.0 |
C |
C1 |
C2 |
H6 |
180.0 |
180.0 |
C5 |
C |
C1 |
C25 |
186.6 |
180.0 |
C1 |
C |
C5 |
H7 |
180.5 |
180.0 |
C |
C1 |
C24 |
H14 |
267.9 |
270.0 |
C |
C1 |
C24 |
H12 |
27.9 |
30.0 |
C |
C1 |
C24 |
H13 |
147.9 |
150.0 |
C1 |
C |
C25 |
H17 |
273.4 |
269.9 |
C1 |
C |
C25 |
H16 |
33.4 |
29.9 |
C1 |
C |
C25 |
H15 |
153.4 |
150.0 |
C2 |
C1 |
C24 |
C |
184.0 |
180.0 |
C24 |
C1 |
C2 |
H6 |
356.1 |
360.0 |
C24 |
C1 |
C |
C25 |
357.2 |
0.1 |
H14 |
C24 |
C1 |
H12 |
240.0 |
240.0 |
H14 |
C24 |
C1 |
H13 |
120.0 |
120.0 |
H12 |
C24 |
C1 |
H13 |
240.0 |
240.0 |
C5 |
C |
C25 |
C1 |
173.3 |
180.0 |
C25 |
C |
C5 |
H7 |
7.1 |
0.0 |
C25 |
C |
C1 |
C24 |
357.2 |
0.1 |
H17 |
C25 |
C |
H16 |
240.0 |
240.0 |
H17 |
C25 |
C |
H15 |
120.0 |
119.9 |
H16 |
C25 |
C |
H15 |
240.0 |
239.9 |
C22 |
C21 |
H1 |
C20 |
180.0 |
180.2 |
H1 |
C21 |
C20 |
C19 |
179.0 |
180.0 |
H1 |
C21 |
C20 |
H3 |
359.0 |
360.0 |
H2 |
C22 |
C21 |
C20 |
179.9 |
180.0 |
H2 |
C22 |
C21 |
H1 |
359.9 |
359.8 |
H2 |
C22 |
C23 |
C18 |
180.4 |
180.0 |
H2 |
C22 |
C23 |
H4 |
0.5 |
359.9 |
C21 |
C20 |
H3 |
C19 |
180.0 |
180.0 |
H3 |
C20 |
C21 |
H1 |
359.0 |
360.0 |
H3 |
C20 |
C19 |
H5 |
1.8 |
360.0 |
C22 |
C23 |
H4 |
C18 |
180.0 |
180.0 |
H4 |
C23 |
C22 |
H2 |
0.5 |
359.9 |
H4 |
C23 |
C18 |
C19 |
180.3 |
180.3 |
H4 |
C23 |
C18 |
C7 |
0.1 |
360.0 |
H5 |
C19 |
C20 |
H3 |
1.8 |
360.0 |
H6 |
C2 |
C1 |
C |
180.0 |
180.0 |
H6 |
C2 |
C1 |
C24 |
356.1 |
360.0 |
H7 |
C5 |
C |
C1 |
180.5 |
180.0 |
H7 |
C5 |
C |
C25 |
7.1 |
0.0 |
H8 |
C12 |
C13 |
C14 |
178.9 |
180.0 |
H8 |
C12 |
C13 |
N3 |
359.4 |
359.9 |
H9 |
C14 |
C13 |
N3 |
359.0 |
359.9 |
H11 |
C16 |
N3 |
C13 |
0.7 |
0.0 |
N4 |
C16 |
H11 |
N3 |
180.0 |
180.0 |
H11 |
C16 |
N4 |
N5 |
180.5 |
179.7 |
C1 |
C24 |
H14 |
H12 |
120.0 |
120.0 |
C1 |
C24 |
H14 |
H13 |
240.0 |
240.0 |
H12 |
C24 |
H14 |
H13 |
120.0 |
120.0 |
C1 |
C24 |
H12 |
H14 |
240.0 |
240.0 |
C1 |
C24 |
H12 |
H13 |
120.0 |
120.0 |
H14 |
C24 |
H12 |
H13 |
240.0 |
240.0 |
C1 |
C24 |
H13 |
H14 |
120.0 |
120.0 |
C1 |
C24 |
H13 |
H12 |
240.0 |
240.0 |
H14 |
C24 |
H13 |
H12 |
120.0 |
120.0 |
C |
C25 |
H17 |
H16 |
120.0 |
120.0 |
C |
C25 |
H17 |
H15 |
240.0 |
240.1 |
H16 |
C25 |
H17 |
H15 |
120.0 |
120.0 |
C |
C25 |
H16 |
H17 |
240.0 |
240.0 |
C |
C25 |
H16 |
H15 |
120.0 |
120.0 |
H17 |
C25 |
H16 |
H15 |
240.0 |
240.0 |
C |
C25 |
H15 |
H17 |
120.0 |
119.9 |
C |
C25 |
H15 |
H16 |
240.0 |
239.9 |
H17 |
C25 |
H15 |
H16 |
120.0 |
120.0 |
C7 |
C8 |
H19 |
N2 |
240.6 |
240.0 |
C7 |
C8 |
H19 |
H18 |
120.3 |
120.0 |
N2 |
C8 |
H19 |
H18 |
239.7 |
240.1 |
H19 |
C8 |
N2 |
H23 |
327.8 |
239.9 |
C7 |
C8 |
H18 |
N2 |
119.4 |
120.1 |
C7 |
C8 |
H18 |
H19 |
239.7 |
239.9 |
N2 |
C8 |
H18 |
H19 |
120.3 |
119.9 |
H18 |
C8 |
N2 |
H23 |
207.6 |
120.0 |
C18 |
C7 |
H20 |
C8 |
240.4 |
240.0 |
C18 |
C7 |
H20 |
C6 |
120.9 |
120.0 |
H20 |
C7 |
C8 |
N2 |
57.3 |
305.0 |
H20 |
C7 |
C8 |
H19 |
177.2 |
65.0 |
H20 |
C7 |
C8 |
H18 |
297.4 |
184.9 |
H20 |
C7 |
C6 |
N1 |
23.2 |
155.1 |
H20 |
C7 |
C6 |
N |
202.7 |
335.6 |
H21 |
N1 |
C6 |
N |
180.8 |
180.0 |
C9 |
N2 |
H23 |
C8 |
180.0 |
179.9 |
H23 |
N2 |
C8 |
H19 |
327.8 |
239.9 |
H23 |
N2 |
C8 |
H18 |
207.6 |
120.0 |