Atom Nomenclature for 4LP

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4LP

Atom Name (V3) Atom Name (V2)
C33 C1
C32 C2
C34 C3
C31 C4
C35 C5
C21 C6
C22 C7
C26 C8
C27 C9
C9 C10
C30 C11
C20 C12
C6 C13
C7 C14
C25 C15
C4 C16
C24 C17
C3 C18
C36 C19
C13 C20
C17 C21
C18 C22
C16 C23
C10 C24
C11 C25
C12 C26
C1 C27
C15 C28
N28 N1
N23 N2
N29 N3
N5 N4
N14 N5
O37 O1
O19 O2
O2 O3
F8 F1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26