PDB Chemical Component 4LM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 4LM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C |
O1 |
1.195 |
1.215 |
| C |
CA |
1.487 |
1.477 |
| C |
O2 |
1.253 |
1.347 |
| N |
CA |
1.372 |
1.368 |
| N |
C4A |
1.302 |
1.303 |
| P |
OP1 |
1.504 |
1.480 |
| P |
OP2 |
1.501 |
1.611 |
| P |
OP3 |
1.487 |
1.610 |
| P |
OP4 |
1.639 |
1.609 |
| N1 |
C2 |
1.344 |
1.318 |
| N1 |
C6 |
1.340 |
1.320 |
| C2 |
C3 |
1.388 |
1.387 |
| C2 |
C2A |
1.509 |
1.507 |
| C3 |
O3 |
1.350 |
1.357 |
| C3 |
C4 |
1.396 |
1.406 |
| C4 |
C5 |
1.390 |
1.402 |
| C4 |
C4A |
1.501 |
1.472 |
| C5 |
C6 |
1.396 |
1.378 |
| C5 |
C5A |
1.518 |
1.507 |
| CA |
CB |
1.356 |
1.346 |
| CB |
CG |
1.515 |
1.507 |
| C5A |
OP4 |
1.434 |
1.429 |
| O3 |
HO3 |
0.950 |
0.967 |
| C6 |
H6 |
1.080 |
1.080 |
| CB |
HB |
1.080 |
1.080 |
| CG |
HG |
1.100 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| CG |
HGB |
1.100 |
1.090 |
| C2A |
H2A |
1.100 |
1.090 |
| C2A |
H2A1 |
1.100 |
1.090 |
| C2A |
H2A2 |
1.099 |
1.090 |
| C4A |
H4A |
1.080 |
1.080 |
| C5A |
H5A |
1.100 |
1.090 |
| C5A |
H5A1 |
1.100 |
1.090 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.967 |
| O2 |
H2 |
0.950 |
0.967 |
Bond Angles for 4LM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C |
CA |
119.3 |
120.0 |
| O1 |
C |
O2 |
118.9 |
119.9 |
| CA |
C |
O2 |
121.7 |
120.0 |
| C |
CA |
N |
118.8 |
120.0 |
| C |
CA |
CB |
124.3 |
120.0 |
| C |
O2 |
H2 |
109.5 |
117.1 |
| CA |
N |
C4A |
129.0 |
120.0 |
| N |
CA |
CB |
116.8 |
120.0 |
| N |
C4A |
C4 |
120.5 |
120.0 |
| N |
C4A |
H4A |
119.8 |
120.0 |
| OP1 |
P |
OP2 |
113.9 |
109.5 |
| OP1 |
P |
OP3 |
114.3 |
109.5 |
| OP1 |
P |
OP4 |
102.8 |
109.5 |
| OP2 |
P |
OP3 |
114.8 |
109.4 |
| OP2 |
P |
OP4 |
102.1 |
109.5 |
| P |
OP2 |
HOP2 |
109.5 |
114.0 |
| OP3 |
P |
OP4 |
107.2 |
109.5 |
| P |
OP3 |
HOP3 |
109.5 |
114.0 |
| P |
OP4 |
C5A |
120.3 |
123.0 |
| C2 |
N1 |
C6 |
119.4 |
122.2 |
| N1 |
C2 |
C3 |
120.1 |
120.8 |
| N1 |
C2 |
C2A |
121.4 |
119.6 |
| N1 |
C6 |
C5 |
122.5 |
121.1 |
| N1 |
C6 |
H6 |
118.8 |
119.4 |
| C3 |
C2 |
C2A |
118.6 |
119.6 |
| C2 |
C3 |
O3 |
117.1 |
120.6 |
| C2 |
C3 |
C4 |
122.1 |
118.8 |
| C2 |
C2A |
H2A |
109.5 |
109.5 |
| C2 |
C2A |
H2A1 |
109.5 |
109.5 |
| C2 |
C2A |
H2A2 |
109.5 |
109.5 |
| O3 |
C3 |
C4 |
120.8 |
120.6 |
| C3 |
O3 |
HO3 |
109.5 |
114.0 |
| C3 |
C4 |
C5 |
116.3 |
118.1 |
| C3 |
C4 |
C4A |
121.4 |
121.0 |
| C5 |
C4 |
C4A |
121.8 |
121.0 |
| C4 |
C5 |
C6 |
119.5 |
119.1 |
| C4 |
C5 |
C5A |
122.5 |
120.5 |
| C4 |
C4A |
H4A |
119.7 |
120.1 |
| C6 |
C5 |
C5A |
118.0 |
120.4 |
| C5 |
C6 |
H6 |
118.7 |
119.5 |
| C5 |
C5A |
OP4 |
110.4 |
109.5 |
| C5 |
C5A |
H5A |
109.2 |
109.5 |
| C5 |
C5A |
H5A1 |
109.2 |
109.5 |
| CA |
CB |
CG |
125.4 |
120.0 |
| CA |
CB |
HB |
117.3 |
120.0 |
| CG |
CB |
HB |
117.3 |
120.0 |
| CB |
CG |
HG |
109.5 |
109.5 |
| CB |
CG |
HGA |
109.5 |
109.4 |
| CB |
CG |
HGB |
109.5 |
109.5 |
| OP4 |
C5A |
H5A |
109.2 |
109.4 |
| OP4 |
C5A |
H5A1 |
109.2 |
109.4 |
| HG |
CG |
HGA |
109.4 |
109.5 |
| HG |
CG |
HGB |
109.4 |
109.5 |
| HGA |
CG |
HGB |
109.5 |
109.5 |
| H2A |
C2A |
H2A1 |
109.5 |
109.4 |
| H2A |
C2A |
H2A2 |
109.5 |
109.5 |
| H2A1 |
C2A |
H2A2 |
109.4 |
109.5 |
| H5A |
C5A |
H5A1 |
109.8 |
109.4 |
Torsion Angles for 4LM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
C |
O1 |
O2 |
180.9 |
180.2 |
| O1 |
C |
CA |
N |
152.2 |
354.5 |
| O1 |
C |
CA |
CB |
330.2 |
174.5 |
| O1 |
C |
O2 |
H2 |
0.0 |
360.0 |
| O1 |
C |
CA |
O2 |
179.1 |
179.8 |
| CA |
C |
O2 |
H2 |
179.1 |
179.8 |
| C |
CA |
N |
C4A |
182.0 |
312.4 |
| N |
CA |
C |
CB |
182.0 |
180.0 |
| C |
CA |
CB |
CG |
2.0 |
0.1 |
| C |
CA |
CB |
HB |
182.0 |
180.1 |
| O1 |
C |
O2 |
CA |
180.9 |
180.2 |
| O2 |
C |
CA |
N |
333.1 |
174.7 |
| O2 |
C |
CA |
CB |
151.1 |
354.7 |
| N |
CA |
C |
O2 |
333.1 |
174.7 |
| C |
CA |
N |
CB |
178.1 |
180.0 |
| CA |
N |
C4A |
C4 |
182.6 |
184.4 |
| CA |
N |
C4A |
H4A |
2.6 |
4.4 |
| N |
CA |
CB |
CG |
180.0 |
180.0 |
| N |
CA |
CB |
HB |
0.0 |
0.0 |
| C4A |
N |
CA |
CB |
3.9 |
132.4 |
| C3 |
C4 |
C4A |
N |
342.3 |
359.9 |
| C5 |
C4 |
C4A |
N |
154.0 |
179.9 |
| C4 |
C4A |
N |
H4A |
180.0 |
180.1 |
| OP2 |
P |
OP1 |
OP3 |
225.4 |
240.0 |
| OP2 |
P |
OP1 |
OP4 |
109.6 |
120.0 |
| OP1 |
P |
OP2 |
HOP2 |
0.0 |
180.0 |
| OP3 |
P |
OP1 |
OP4 |
244.3 |
240.0 |
| OP1 |
P |
OP3 |
HOP3 |
360.0 |
300.0 |
| OP1 |
P |
OP4 |
C5A |
180.3 |
55.0 |
| OP1 |
P |
OP2 |
OP3 |
134.4 |
120.0 |
| OP1 |
P |
OP2 |
OP4 |
250.0 |
240.0 |
| OP3 |
P |
OP2 |
OP4 |
115.5 |
120.0 |
| OP2 |
P |
OP3 |
HOP3 |
134.2 |
60.0 |
| OP2 |
P |
OP4 |
C5A |
62.0 |
295.0 |
| OP1 |
P |
OP3 |
OP2 |
225.8 |
240.0 |
| OP1 |
P |
OP3 |
OP4 |
113.2 |
120.0 |
| OP2 |
P |
OP3 |
OP4 |
247.4 |
240.0 |
| OP3 |
P |
OP2 |
HOP2 |
225.6 |
60.1 |
| OP3 |
P |
OP4 |
C5A |
301.1 |
175.0 |
| OP1 |
P |
OP4 |
OP2 |
118.2 |
120.0 |
| OP1 |
P |
OP4 |
OP3 |
239.2 |
240.0 |
| OP2 |
P |
OP4 |
OP3 |
121.0 |
120.0 |
| OP4 |
P |
OP2 |
HOP2 |
110.0 |
300.1 |
| OP4 |
P |
OP3 |
HOP3 |
246.8 |
180.0 |
| C5 |
C5A |
OP4 |
P |
202.8 |
180.0 |
| P |
OP4 |
C5A |
H5A |
82.8 |
60.0 |
| P |
OP4 |
C5A |
H5A1 |
322.8 |
300.1 |
| C2 |
N1 |
C6 |
C5 |
359.8 |
360.0 |
| C2 |
N1 |
C6 |
H6 |
179.8 |
179.9 |
| C3 |
C2 |
N1 |
C2A |
180.5 |
180.1 |
| N1 |
C2 |
C3 |
O3 |
180.1 |
180.0 |
| N1 |
C2 |
C3 |
C4 |
357.6 |
359.9 |
| N1 |
C2 |
C2A |
H2A |
0.0 |
90.0 |
| N1 |
C2 |
C2A |
H2A1 |
120.0 |
210.0 |
| N1 |
C2 |
C2A |
H2A2 |
240.0 |
330.0 |
| C6 |
N1 |
C2 |
C3 |
0.5 |
0.1 |
| C6 |
N1 |
C2 |
C2A |
179.9 |
180.0 |
| C4 |
C5 |
C6 |
N1 |
1.8 |
360.0 |
| N1 |
C6 |
C5 |
C5A |
180.6 |
180.0 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
180.0 |
| C3 |
C2 |
N1 |
C6 |
0.5 |
0.1 |
| N1 |
C2 |
C3 |
C2A |
179.5 |
179.9 |
| C3 |
C2 |
C2A |
H2A |
179.5 |
270.0 |
| C3 |
C2 |
C2A |
H2A1 |
299.5 |
30.0 |
| C3 |
C2 |
C2A |
H2A2 |
59.5 |
149.9 |
| O3 |
C3 |
C2 |
C4 |
182.4 |
180.0 |
| C2 |
C3 |
O3 |
HO3 |
180.0 |
90.0 |
| C2 |
C3 |
C4 |
C5 |
3.8 |
0.0 |
| C2 |
C3 |
C4 |
C4A |
175.9 |
180.0 |
| C2A |
C2 |
N1 |
C6 |
179.9 |
180.0 |
| N1 |
C2 |
C2A |
C3 |
180.5 |
180.1 |
| C2A |
C2 |
C3 |
O3 |
0.6 |
0.1 |
| C2A |
C2 |
C3 |
C4 |
178.2 |
180.0 |
| H2A |
C2A |
C2 |
H2A1 |
240.0 |
240.0 |
| H2A |
C2A |
C2 |
H2A2 |
120.0 |
120.0 |
| H2A1 |
C2A |
C2 |
H2A2 |
240.0 |
240.0 |
| O3 |
C3 |
C2 |
C2A |
0.6 |
0.1 |
| C2 |
C3 |
O3 |
C4 |
177.6 |
180.0 |
| O3 |
C3 |
C4 |
C5 |
181.2 |
180.0 |
| O3 |
C3 |
C4 |
C4A |
353.3 |
360.0 |
| N |
C4A |
C4 |
C3 |
342.3 |
359.9 |
| C4 |
C3 |
C2 |
C2A |
178.2 |
180.0 |
| C2 |
C3 |
C4 |
O3 |
182.5 |
180.0 |
| C4 |
C3 |
O3 |
HO3 |
2.4 |
270.0 |
| C5 |
C4 |
C3 |
C4A |
187.9 |
180.0 |
| C3 |
C4 |
C5 |
C6 |
356.6 |
0.0 |
| C3 |
C4 |
C5 |
C5A |
177.8 |
180.0 |
| C3 |
C4 |
C4A |
H4A |
162.3 |
180.0 |
| N |
C4A |
C4 |
C5 |
154.0 |
179.9 |
| N1 |
C6 |
C5 |
C4 |
1.8 |
360.0 |
| C3 |
C4 |
C5 |
C4A |
172.1 |
180.0 |
| C5 |
C4 |
C4A |
H4A |
334.0 |
360.0 |
| C6 |
C5 |
C4 |
C5A |
178.8 |
180.0 |
| C4 |
C5 |
C6 |
H6 |
181.8 |
180.0 |
| C4 |
C5 |
C5A |
OP4 |
84.3 |
180.0 |
| C4 |
C5 |
C5A |
H5A |
204.3 |
300.0 |
| C4 |
C5 |
C5A |
H5A1 |
324.3 |
60.0 |
| N |
C4A |
C4 |
H4A |
180.0 |
179.9 |
| C3 |
C4 |
C4A |
C5 |
188.3 |
180.0 |
| C4A |
C4 |
C5 |
C6 |
184.5 |
180.0 |
| C4A |
C4 |
C5 |
C5A |
5.7 |
360.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C6 |
C5 |
C4 |
C4A |
184.5 |
180.0 |
| C4 |
C5 |
C6 |
C5A |
181.1 |
180.0 |
| C6 |
C5 |
C5A |
OP4 |
265.4 |
360.0 |
| C6 |
C5 |
C5A |
H5A |
25.4 |
120.0 |
| C6 |
C5 |
C5A |
H5A1 |
145.5 |
240.0 |
| P |
OP4 |
C5A |
C5 |
202.8 |
180.0 |
| C5A |
C5 |
C4 |
C4A |
5.7 |
360.0 |
| C4 |
C5 |
C5A |
C6 |
178.8 |
180.0 |
| C5A |
C5 |
C6 |
H6 |
0.6 |
0.1 |
| OP4 |
C5A |
C5 |
H5A |
240.0 |
240.0 |
| OP4 |
C5A |
C5 |
H5A1 |
120.0 |
120.0 |
| H5A |
C5A |
C5 |
H5A1 |
240.0 |
240.0 |
| CB |
CA |
C |
O2 |
151.1 |
354.7 |
| C |
CA |
CB |
N |
182.0 |
180.0 |
| CB |
CA |
N |
C4A |
3.9 |
132.4 |
| CG |
CB |
CA |
HB |
180.0 |
180.0 |
| CA |
CB |
CG |
HG |
180.0 |
180.0 |
| CA |
CB |
CG |
HGA |
300.0 |
300.0 |
| CA |
CB |
CG |
HGB |
60.0 |
59.9 |
| CA |
CB |
CG |
HB |
180.0 |
180.0 |
| HG |
CG |
CB |
HGA |
240.0 |
240.0 |
| HG |
CG |
CB |
HGB |
120.0 |
120.1 |
| HGA |
CG |
CB |
HGB |
240.0 |
240.0 |
| C5 |
C5A |
OP4 |
H5A |
120.0 |
120.0 |
| C5 |
C5A |
OP4 |
H5A1 |
240.0 |
239.9 |
| H5A |
C5A |
OP4 |
H5A1 |
120.0 |
119.9 |
| HO3 |
O3 |
C3 |
C4 |
2.4 |
270.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C5A |
0.6 |
0.1 |
| CA |
CB |
HB |
CG |
180.0 |
180.0 |
| HB |
CB |
CG |
HG |
0.0 |
0.0 |
| HB |
CB |
CG |
HGA |
120.0 |
120.0 |
| HB |
CB |
CG |
HGB |
240.0 |
239.9 |
| HG |
CG |
CB |
HB |
0.0 |
0.0 |
| CB |
CG |
HG |
HGA |
120.0 |
119.9 |
| CB |
CG |
HG |
HGB |
240.0 |
240.0 |
| HGA |
CG |
HG |
HGB |
120.0 |
120.0 |
| HGA |
CG |
CB |
HB |
120.0 |
120.0 |
| CB |
CG |
HGA |
HG |
240.0 |
240.0 |
| CB |
CG |
HGA |
HGB |
120.0 |
119.9 |
| HG |
CG |
HGA |
HGB |
240.1 |
239.9 |
| HGB |
CG |
CB |
HB |
240.0 |
239.9 |
| CB |
CG |
HGB |
HG |
120.0 |
120.0 |
| CB |
CG |
HGB |
HGA |
240.0 |
240.1 |
| HG |
CG |
HGB |
HGA |
119.9 |
120.0 |
| C2 |
C2A |
H2A |
H2A1 |
120.0 |
120.0 |
| C2 |
C2A |
H2A |
H2A2 |
240.0 |
240.0 |
| H2A1 |
C2A |
H2A |
H2A2 |
120.0 |
120.0 |
| C2 |
C2A |
H2A1 |
H2A |
240.0 |
240.0 |
| C2 |
C2A |
H2A1 |
H2A2 |
120.0 |
120.0 |
| H2A |
C2A |
H2A1 |
H2A2 |
240.0 |
240.0 |
| C2 |
C2A |
H2A2 |
H2A |
120.0 |
120.0 |
| C2 |
C2A |
H2A2 |
H2A1 |
240.0 |
240.0 |
| H2A |
C2A |
H2A2 |
H2A1 |
120.0 |
120.0 |
| N |
C4A |
H4A |
C4 |
180.0 |
180.1 |
| C5 |
C5A |
H5A |
OP4 |
239.3 |
240.0 |
| C5 |
C5A |
H5A |
H5A1 |
119.7 |
120.0 |
| OP4 |
C5A |
H5A |
H5A1 |
240.4 |
240.1 |
| C5 |
C5A |
H5A1 |
OP4 |
120.7 |
120.1 |
| C5 |
C5A |
H5A1 |
H5A |
240.3 |
240.0 |
| OP4 |
C5A |
H5A1 |
H5A |
119.6 |
119.9 |
| HOP2 |
OP2 |
P |
OP3 |
225.6 |
60.1 |
| HOP2 |
OP2 |
P |
OP4 |
110.0 |
300.1 |
| HOP3 |
OP3 |
P |
OP4 |
246.8 |
180.0 |