Atom Nomenclature for 4LK

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 4LK

Atom Name (V3) Atom Name (V2)
C25 C1
C24 C2
C26 C3
C23 C4
C27 C5
C5 C6
C6 C7
C18 C8
C3 C9
C19 C10
C22 C11
C4 C12
C13 C13
C2 C14
C17 C15
C28 C16
C16 C17
C29 C18
C32 C19
C11 C20
C8 C21
C9 C22
C31 C23
N20 N1
N15 N2
N21 N3
N14 N4
N7 N5
O33 O1
O12 O2
O10 O3
O30 O4
F1 F1
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18