PDB Chemical Component 4LD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4LD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	O1	1.377	1.209
N1	C2	1.346	1.300
O1	C3	1.364	1.341
C2	C1	1.479	1.507
C2	C5	1.440	1.423
C3	C4	1.469	1.508
C3	C5	1.367	1.367
C5	C6	1.462	1.484
C24	C6	1.403	1.389
C24	C11	1.366	1.389
N2	C11	1.398	1.387
N2	C12	1.363	1.376
C6	C7	1.411	1.402
C11	C10	1.408	1.404
C12	C23	1.392	1.395
C12	C13	1.430	1.405
C23	C22	1.399	1.379
C7	O2	1.391	1.360
C7	C9	1.420	1.379
C10	C13	1.437	1.471
C10	C9	1.388	1.396
O2	C8	1.411	1.429
C13	C14	1.393	1.400
C22	N5	1.351	1.320
C14	N5	1.381	1.328
C14	C15	1.434	1.482
C15	C16	1.405	1.366
C15	C18	1.436	1.410
C17	C16	1.488	1.507
C19	C21	1.522	1.530
C19	C18	1.478	1.508
C19	C20	1.522	1.530
C16	N3	1.375	1.347
C21	C20	1.489	1.530
C18	N4	1.356	1.306
N3	N4	1.362	1.400
C8	H8	1.100	1.091
C8	H7	1.100	1.090
C8	H9	1.100	1.089
C9	H10	1.080	1.080
C4	H4	1.100	1.090
C4	H5	1.100	1.090
C4	H6	1.100	1.090
N3	H15	1.000	0.970
C1	H3	1.100	1.091
C1	H1	1.100	1.089
C1	H2	1.100	1.090
C17	H14	1.100	1.090
C17	H13	1.100	1.090
C17	H12	1.100	1.090
C19	H16	1.100	1.089
C20	H17	1.100	1.090
C20	H18	1.100	1.090
C21	H20	1.100	1.090
C21	H19	1.100	1.090
C22	H21	1.080	1.081
C23	H22	1.080	1.080
C24	H23	1.080	1.079
N2	H11	1.000	0.970

Bond Angles for 4LD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N1	C2	C1	123.8	126.8
N1	C2	C5	108.4	106.3
O1	C3	C4	118.3	126.9
O1	C3	C5	110.0	106.3
C5	C2	C1	127.8	126.9
C2	C1	H3	109.5	109.5
C2	C1	H1	109.5	109.5
C2	C1	H2	109.5	109.4
C3	C5	C2	105.0	103.7
C2	C5	C6	128.5	128.2
C4	C3	C5	131.7	126.9
C3	C4	H4	109.5	109.4
C3	C4	H5	109.5	109.4
C3	C4	H6	109.5	109.5
C3	C5	C6	126.3	128.2
C5	C6	C7	117.1	119.9
C6	C7	O2	115.8	120.0
C12	C23	C22	114.1	119.2
C12	C23	H22	122.9	120.5
C23	C22	N5	126.0	121.6
C23	C22	H21	117.0	119.2
C7	C9	H10	121.2	120.0
C10	C13	C14	135.1	134.4
C10	C9	H10	121.2	120.1
O2	C8	H8	109.5	109.5
O2	C8	H7	109.5	109.4
O2	C8	H9	109.5	109.5
C13	C14	N5	119.5	120.1
C13	C14	C15	124.1	120.0
C14	N5	C22	119.1	121.9
N5	C22	H21	117.0	119.2
C15	C14	N5	116.3	119.9
C14	C15	C16	126.3	126.3
C14	C15	C18	128.2	126.3
C15	C16	N3	105.4	107.6
C15	C18	N4	110.5	108.1
C20	C19	C21	58.6	60.0
C19	C21	C20	60.7	60.0
C21	C19	H16	115.5	117.5
C19	C21	H20	119.9	117.5
C19	C21	H19	119.9	117.5
C19	C18	N4	121.3	126.0
C20	C19	H16	115.5	117.5
C19	C20	H17	119.9	117.6
C19	C20	H18	119.9	117.5
C16	N3	N4	113.5	108.3
C16	N3	H15	123.3	125.8
C21	C20	H17	119.9	117.5
C21	C20	H18	119.9	117.5
N3	N4	C18	105.0	108.6
N4	N3	H15	123.2	125.9
H8	C8	H7	109.5	109.5
H8	C8	H9	109.5	109.5
H7	C8	H9	109.4	109.5
H4	C4	H5	109.5	109.5
H4	C4	H6	109.5	109.5
H5	C4	H6	109.5	109.5
H3	C1	H1	109.4	109.5
H3	C1	H2	109.5	109.4
H1	C1	H2	109.5	109.5
H14	C17	H13	109.4	109.5
H14	C17	H12	109.5	109.5
H13	C17	H12	109.5	109.4
H17	C20	H18	109.5	115.5
H20	C21	H19	109.5	115.5

Torsion Angles for 4LD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1	N1	C2	C1	178.2	179.9
O1	N1	C2	C5	358.7	0.1
N1	O1	C3	C4	182.1	180.1
N1	O1	C3	C5	1.1	359.7
C5	C2	N1	C1	180.5	180.2
N1	C2	C1	H3	0.0	270.2
N1	C2	C1	H1	120.0	30.2
N1	C2	C1	H2	240.0	150.3
C3	C5	C2	N1	1.9	359.8
N1	C2	C5	C6	186.4	179.8
O1	C3	C5	C2	358.2	0.3
C4	C3	O1	C5	181.1	180.3
O1	C3	C4	H4	360.0	269.7
O1	C3	C4	H5	120.0	29.7
O1	C3	C4	H6	240.0	149.7
O1	C3	C5	C6	173.8	180.2
N1	C2	C1	C5	180.6	180.3
C3	C5	C2	C1	182.5	180.0
C1	C2	C5	C6	7.0	0.1
H3	C1	C2	H1	240.0	240.0
H3	C1	C2	H2	120.0	119.9
H1	C1	C2	H2	240.0	239.9
N1	C2	C5	C1	179.4	179.8
C5	C2	C1	H3	179.4	90.0
C5	C2	C1	H1	299.3	210.0
C5	C2	C1	H2	59.4	330.0
C4	C3	C5	C2	176.9	180.0
C3	C5	C2	C6	175.5	179.9
C2	C5	C6	C7	117.2	90.0
O1	C3	C4	C5	178.7	179.6
C4	C3	C5	C6	352.6	359.9
H4	C4	C3	H5	240.0	240.0
H4	C4	C3	H6	120.0	120.0
H5	C4	C3	H6	240.0	240.0
N1	C2	C5	C3	1.9	359.8
O1	C3	C5	C4	181.3	180.3
C2	C5	C3	C6	184.4	180.1
C5	C3	C4	H4	181.3	90.0
C5	C3	C4	H5	301.3	210.1
C5	C3	C4	H6	61.3	330.0
C3	C5	C6	C7	302.6	270.0
C6	C5	C2	C1	7.0	0.1
C3	C5	C6	C2	185.4	180.1
C5	C6	C7	O2	359.4	360.0
N2	C12	C23	H22	359.3	359.9
C6	C7	C9	H10	180.7	180.0
C11	C10	C9	H10	178.3	180.0
C12	C23	C22	N5	358.8	360.0
C12	C23	C22	H21	178.8	180.0
C12	C13	C14	N5	357.3	0.0
C12	C23	C22	H22	180.0	179.9
C14	N5	C22	C23	2.5	360.0
N5	C22	C23	H21	180.0	180.0
O2	C7	C9	H10	2.2	0.1
C7	O2	C8	H8	180.0	300.0
C7	O2	C8	H7	300.0	60.0
C7	O2	C8	H9	60.0	180.0
C10	C9	C7	H10	180.0	179.7
C13	C10	C9	H10	2.8	359.9
C10	C13	C14	N5	176.8	179.9
C10	C13	C14	C15	354.4	360.0
C7	C9	C10	H10	180.0	180.3
H8	C8	O2	H7	240.0	240.0
H8	C8	O2	H9	120.0	120.0
H7	C8	O2	H9	240.1	240.0
C13	C14	N5	C22	359.6	0.0
C15	C14	C13	N5	177.6	180.0
C13	C14	C15	C16	124.9	243.1
C13	C14	C15	C18	307.3	63.1
C23	C22	N5	H21	180.0	180.0
C15	C14	N5	C22	181.9	180.0
C23	C22	N5	C14	2.5	360.0
C13	C14	N5	C15	177.8	180.0
C14	N5	C22	H21	182.5	180.0
N5	C14	C15	C16	302.6	63.2
N5	C14	C15	C18	125.0	243.2
C13	C14	C15	N5	182.3	180.0
C14	C15	C16	N3	182.4	180.0
C14	C15	C18	N4	177.1	180.0
C16	C15	C14	N5	302.6	63.2
C14	C15	C16	C18	182.0	180.0
C15	C16	N3	N4	0.1	360.0
C15	C16	N3	H15	180.1	180.0
C18	C15	C14	N5	125.0	243.2
C14	C15	C18	C16	178.0	180.0
C18	C15	C16	N3	0.4	0.0
C19	C18	C15	N4	180.2	180.1
N3	N4	C18	C15	0.9	360.0
C17	C16	N3	N4	180.2	180.2
C17	C16	N3	H15	0.2	0.3
C21	C19	C18	N4	322.6	302.5
C20	C19	C21	H16	105.5	107.5
C21	C19	C20	H17	109.6	107.4
C21	C19	C20	H18	250.4	252.5
C19	C21	C20	H17	250.3	252.4
C19	C21	C20	H18	109.7	107.5
H20	C21	C19	H19	219.3	215.0
C15	C18	C19	N4	179.8	179.9
N3	N4	C18	C19	180.7	179.9
C20	C19	C21	C20	360.0	-0.0
C21	C19	C20	H16	254.5	252.5
C20	C19	C21	H20	109.7	107.5
C20	C19	C21	H19	250.3	252.5
C20	C19	C18	N4	30.8	11.1
C21	C20	C19	H17	250.4	252.6
C21	C20	C19	H18	109.6	107.5
H17	C20	C19	H18	219.3	214.9
C16	N3	N4	C18	359.4	0.0
N4	N3	C16	H15	180.0	180.0
C20	C21	C19	H16	254.5	252.5
C19	C21	C20	H20	109.7	107.5
C19	C21	C20	H19	250.3	252.5
C21	C20	C19	H16	105.5	107.5
C19	C20	C21	H17	109.7	107.6
C19	C20	C21	H18	250.3	252.5
H17	C20	C21	H18	140.7	144.9
C18	N4	N3	H15	179.3	180.0
C15	C18	N4	N3	0.9	360.0
C19	C18	N4	N3	180.7	179.9
C16	N3	N4	H15	180.0	180.0
O2	C8	H8	H7	120.0	120.0
O2	C8	H8	H9	240.0	240.0
H7	C8	H8	H9	120.0	120.0
O2	C8	H7	H8	239.9	240.0
O2	C8	H7	H9	120.0	120.0
H8	C8	H7	H9	240.0	240.0
O2	C8	H9	H8	120.0	120.0
O2	C8	H9	H7	240.0	240.0
H8	C8	H9	H7	120.0	120.0
H4	C4	C3	C5	181.3	90.0
C3	C4	H4	H5	120.0	120.0
C3	C4	H4	H6	240.0	240.0
H5	C4	H4	H6	120.0	120.0
H5	C4	C3	C5	301.3	210.1
C3	C4	H5	H4	240.0	240.0
C3	C4	H5	H6	120.0	120.0
H4	C4	H5	H6	240.0	240.0
H6	C4	C3	C5	61.3	330.0
C3	C4	H6	H4	120.0	120.0
C3	C4	H6	H5	240.0	240.0
H4	C4	H6	H5	120.0	120.1
C16	N3	H15	N4	180.0	179.9
H15	N3	N4	C18	179.3	180.0
C2	C1	H3	H1	120.0	120.0
C2	C1	H3	H2	240.0	240.1
H1	C1	H3	H2	120.0	120.1
C2	C1	H1	H3	240.0	240.0
C2	C1	H1	H2	120.0	120.0
H3	C1	H1	H2	240.0	240.0
C2	C1	H2	H3	120.0	119.9
C2	C1	H2	H1	240.0	240.0
H3	C1	H2	H1	120.0	120.0
H13	C17	H14	H12	120.0	120.0
H14	C17	H13	H12	240.0	240.0
H14	C17	H12	H13	120.0	120.0
C20	C19	H16	C21	294.4	291.4
H16	C19	C21	C20	254.5	252.5
H16	C19	C21	H20	4.1	0.0
H16	C19	C21	H19	144.8	145.0
H16	C19	C18	N4	178.1	156.8
H16	C19	C20	H17	215.2	215.0
H16	C19	C20	H18	355.9	0.1
H17	C20	C19	C21	109.6	107.4
H17	C20	C19	H16	215.2	215.0
C19	C20	H17	H18	144.4	145.8
C21	C20	H17	H18	215.7	214.4
H18	C20	C19	C21	250.4	252.5
H18	C20	C19	H16	355.9	0.1
C19	C20	H18	H17	215.6	214.2
C21	C20	H18	H17	144.3	145.6
C19	C21	H20	C20	288.7	291.4
H20	C21	C19	H16	4.1	0.0
C19	C21	H20	H19	144.3	145.7
H20	C21	C20	H17	140.6	145.0
H20	C21	C20	H18	360.0	0.1
C19	C21	H19	C20	71.3	68.6
H19	C21	C19	H16	144.8	145.0
C19	C21	H19	H20	215.7	214.4
H19	C21	C20	H17	360.0	359.9
H19	C21	C20	H18	219.3	215.0
C23	C22	H21	N5	180.0	180.0
C12	C23	H22	C22	180.0	180.1
H22	C23	C22	N5	178.8	180.1
H22	C23	C22	H21	358.8	0.1