PDB Chemical Component 4KD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 4KD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C3 C16 1.414 1.383
C3 C4 1.423 1.390
C5 C4 1.522 1.509
C5 N 1.455 1.467
C16 C17 1.407 1.391
O C9 1.244 1.216
C4 C8 1.420 1.377
N C9 1.335 1.348
N C6 1.451 1.472
C9 C10 1.501 1.478
C17 C18 1.400 1.382
C8 C18 1.415 1.390
C8 C7 1.476 1.506
C6 C7 1.488 1.528
C10 C11 1.413 1.396
C10 C15 1.352 1.395
C11 C12 1.407 1.379
C15 C14 1.382 1.380
C12 C13 1.374 1.383
C14 C13 1.411 1.383
C13 S 1.702 1.762
N1 S 1.590 1.656
O1 S 1.455 1.421
S O2 1.429 1.421
C3 H1 1.080 1.080
C5 H2 1.100 1.090
C5 H3 1.100 1.090
C6 H4 1.100 1.089
C6 H5 1.099 1.090
C7 H6 1.100 1.090
C7 H7 1.100 1.090
C11 H8 1.080 1.080
C12 H9 1.080 1.080
C15 H10 1.080 1.081
C14 H11 1.081 1.080
N1 H12 1.000 0.970
N1 H13 1.001 0.970
C18 H14 1.080 1.080
C17 O4 1.032 1.360
C16 O3 1.032 1.360
O4 C1   1.429
O3 C2   1.429
C1 H15   1.090
C1 H16   1.091
C1 H17   1.089
C2 H18   1.091
C2 H19   1.089
C2 H20   1.090

Bond Angles for 4KD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C4 C3 C16 119.4 120.5
C3 C16 C17 120.8 119.6
C16 C3 H1 120.3 119.8
C3 C16 O3 119.6 120.2
C3 C4 C8 118.7 120.0
C4 C3 H1 120.3 119.8
C5 C4 C8 123.7 122.3
C5 N C6 115.4 117.4
N C5 H2 109.9 109.4
N C5 H3 109.9 109.4
C16 C17 O4 119.6 120.2
C4 C8 C18 121.6 119.6
C4 C8 C7 121.8 122.8
N C6 H4 108.4 109.8
N C6 H5 108.5 109.8
C9 C10 C11 120.6 120.1
C9 C10 C15 119.0 120.2
C17 C18 H14 120.6 119.7
C8 C18 H14 120.6 119.7
C8 C7 H6 109.6 109.2
C8 C7 H7 109.6 109.1
C7 C6 H4 108.4 109.8
C7 C6 H5 108.5 109.7
C6 C7 H6 109.6 109.2
C6 C7 H7 109.6 109.2
C11 C10 C15 120.3 119.7
C10 C11 C12 117.9 119.9
C10 C11 H8 121.0 120.1
C10 C15 C14 119.1 119.9
C10 C15 H10 120.4 120.1
C11 C12 C13 124.0 120.1
C12 C11 H8 121.1 120.0
C11 C12 H9 118.0 119.9
C15 C14 C13 124.5 120.1
C14 C15 H10 120.4 120.1
C15 C14 H11 117.7 119.9
C12 C13 C14 114.0 120.3
C12 C13 S 125.8 119.9
C13 C12 H9 118.0 119.9
C14 C13 S 120.2 119.8
C13 C14 H11 117.7 120.0
C13 S O2 108.9 106.4
N1 S O2 111.6 106.4
O1 S O2 115.8 123.2
H2 C5 H3 109.5 109.5
H4 C6 H5 109.5 109.8
H6 C7 H7 109.5 109.2
H12 N1 H13 109.5 120.0
C17 O4 C1   117.0
C16 O3 C2   117.0
O4 C1 H15   109.5
O4 C1 H16   109.4
O4 C1 H17   109.5
O3 C2 H18   109.5
O3 C2 H19   109.5
O3 C2 H20   109.4
H15 C1 H16   109.5
H15 C1 H17   109.5
H16 C1 H17   109.4
H18 C2 H19   109.5
H18 C2 H20   109.5
H19 C2 H20   109.5

Torsion Angles for 4KD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C16 C3 C4 C8 2.4 359.4
C4 C3 C16 H1 180.0 179.8
C3 C16 C17 O4 179.4 180.3
C3 C16 O3 C2   0.0
C4 C3 C16 C17 359.0 0.1
C16 C3 C4 H1 180.0 180.2
C4 C3 C16 O3 179.0 180.0
C5 C4 C3 C8 177.4 179.4
C3 C4 C8 C18 357.7 0.9
C3 C4 C8 C7 177.1 181.5
C5 C4 C3 C16 179.8 178.8
C3 C4 C5 C8 182.7 180.6
C5 C4 C3 H1 359.8 358.6
C5 C4 C8 C18 180.5 181.5
C5 C4 C8 C7 359.8 2.1
N C5 C4 C8 12.5 348.1
C5 N C6 H4 186.8 176.3
C5 N C6 H5 305.7 55.5
H2 C5 N H3 120.6 119.9
C17 C16 C3 H1 179.0 180.2
C3 C16 C17 O3 180.0 180.0
C16 C17 C18 H14 180.7 180.0
C16 C17 O4 C1   180.0
O C9 C10 C11 127.9 315.3
O C9 C10 C15 311.2 135.0
C8 C4 C3 C16 2.4 359.4
C8 C4 C3 H1 182.4 179.2
C4 C8 C18 H14 180.7 179.4
C4 C8 C7 H6 136.6 219.0
C4 C8 C7 H7 256.8 99.7
C6 N C5 H2 196.4 284.4
C6 N C5 H3 75.8 164.5
C7 C6 N H4 239.4 119.6
C7 C6 N H5 120.6 240.4
N C6 C7 H6 192.7 167.9
N C6 C7 H7 72.5 287.3
H4 C6 N H5 241.2 120.9
C11 C10 C9 C15 176.7 180.3
C9 C10 C11 C12 181.3 180.0
C9 C10 C11 H8 1.3 359.9
C9 C10 C15 C14 176.0 180.1
C9 C10 C15 H10 356.0 360.0
C3 C16 C17 C18 359.4 0.3
C8 C18 C17 H14 180.0 180.0
C4 C8 C18 C7 179.4 180.6
C17 C18 C8 H14 180.0 180.0
C18 C8 C7 H6 316.0 39.6
C18 C8 C7 H7 76.1 280.3
C4 C8 C7 C18 180.6 179.4
C8 C7 C6 H4 192.0 167.2
C8 C7 C6 H5 73.2 287.9
C6 C7 C8 H6 240.1 120.3
C6 C7 C8 H7 119.9 239.7
H6 C7 C8 H7 239.9 119.4
C5 N C6 C7 66.3 295.9
C4 C8 C7 C6 16.7 339.4
N C6 C7 H4 120.6 240.4
N C6 C7 H5 239.4 119.7
C8 C7 C6 H6 119.9 239.6
C8 C7 C6 H7 240.1 120.3
H4 C6 C7 H5 118.8 239.2
H6 C7 C6 H7 120.1 240.6
C9 C10 C11 C15 183.4 179.7
C11 C10 C15 C14 359.3 359.7
C11 C10 C15 H10 179.3 179.7
C10 C11 C12 C13 3.3 359.9
C12 C11 C10 H8 180.0 180.1
C10 C11 C12 H9 183.3 180.0
C9 C10 C15 C11 176.7 180.3
C15 C10 C11 C12 357.9 0.3
C15 C10 C11 H8 177.9 180.2
C10 C15 C14 C13 2.7 360.0
C14 C15 C10 H10 180.0 180.1
C10 C15 C14 H11 182.7 180.0
C12 C11 C10 C15 357.9 0.3
C10 C11 C12 H8 180.0 179.9
C11 C12 C13 C14 358.6 359.8
C11 C12 C13 S 178.2 180.0
C13 C12 C11 H9 180.0 179.9
C10 C15 C14 H10 180.0 179.9
C12 C13 C14 C15 358.3 0.3
C15 C14 C13 S 178.8 180.1
C13 C14 C15 H11 180.0 180.0
C13 C12 C11 H8 183.3 180.1
C11 C12 C13 H9 180.0 180.1
C15 C14 C13 C12 358.3 0.3
C14 C13 C12 S 180.4 179.8
C12 C13 C14 H11 178.4 180.2
C12 C13 S O2 91.9 336.5
C13 C14 C15 H10 182.7 180.0
C15 C14 C13 H11 180.0 180.0
C12 C13 C14 S 179.6 180.2
C14 C13 C12 H9 178.6 179.7
C14 C13 S O2 271.4 156.7
C12 C13 S C14 180.5 179.8
S C13 C12 H9 358.2 359.9
S C13 C14 H11 358.8 0.1
N1 S C13 O2 240.4 113.5
O1 S C13 O2 123.9 227.0
C13 S N1 O2 117.8 246.4
O1 S N1 O2 229.2 132.9
C13 S O1 O2 240.7 123.0
N1 S O1 O2 128.6 237.1
C4 C3 H1 C16 180.0 180.2
H1 C3 C16 C17 179.0 180.2
H1 C3 C16 O3 359.0 0.2
H1 C3 C4 C8 182.4 179.2
H2 C5 C4 C8 132.2 108.1
H2 C5 N C6 196.4 284.4
N C5 H2 H3 239.1 240.1
H3 C5 C4 C8 252.8 228.1
H3 C5 N C6 75.8 164.5
N C5 H3 H2 120.9 119.9
N C6 H4 H5 118.2 239.1
C7 C6 H4 H5 241.8 120.7
H4 C6 C7 H6 72.1 287.5
H4 C6 C7 H7 312.0 46.9
N C6 H5 H4 241.8 120.8
C7 C6 H5 H4 118.1 239.3
H5 C6 C7 H6 313.3 48.3
H5 C6 C7 H7 193.1 167.7
C8 C7 H6 H7 120.2 240.7
H6 C7 C6 H4 72.1 287.5
H6 C7 C6 H5 313.3 48.3
C6 C7 H6 H7 239.8 119.3
C8 C7 H7 H6 239.8 119.3
H7 C7 C6 H4 312.0 46.9
H7 C7 C6 H5 193.1 167.7
C6 C7 H7 H6 120.2 240.7
H8 C11 C10 C15 177.9 180.2
C10 C11 H8 C12 180.0 180.1
H8 C11 C12 C13 183.3 180.1
H8 C11 C12 H9 3.3 0.1
C11 C12 H9 C13 180.0 179.9
H9 C12 C11 H8 3.3 0.1
H9 C12 C13 C14 178.6 179.7
H9 C12 C13 S 358.2 359.9
C10 C15 H10 C14 180.0 180.1
H10 C15 C14 C13 182.7 180.0
H10 C15 C14 H11 2.7 0.1
C15 C14 H11 C13 180.0 180.0
H11 C14 C15 H10 2.7 0.1
H11 C14 C13 S 358.8 0.1
H12 N1 S O2 62.2 263.6
H13 N1 S O2 182.2 83.6
O4 C17 C18 H14 0.7 360.0
C17 O4 C1 H15   60.0
C17 O4 C1 H16   180.0
C17 O4 C1 H17   300.0
C3 C16 O3 C17 180.0 180.0
O3 C16 C3 H1 359.0 0.2
O3 C16 C17 O4 359.4 0.3
C16 O3 C2 H18   300.0
C16 O3 C2 H19   60.0
C16 O3 C2 H20   180.0
H15 C1 O4 H16   240.0
H15 C1 O4 H17   120.1
H16 C1 O4 H17   240.0
H18 C2 O3 H19   240.0
H18 C2 O3 H20   120.0
H19 C2 O3 H20   240.0
O4 C1 H15 H16   120.0
O4 C1 H15 H17   239.9
H16 C1 H15 H17   120.0
O4 C1 H16 H15   240.0
O4 C1 H16 H17   120.0
H15 C1 H16 H17   240.0
O4 C1 H17 H15   120.0
O4 C1 H17 H16   240.0
H15 C1 H17 H16   120.0
O3 C2 H18 H19   120.0
O3 C2 H18 H20   240.1
H19 C2 H18 H20   120.0
O3 C2 H19 H18   240.0
O3 C2 H19 H20   120.0
H18 C2 H19 H20   240.0
O3 C2 H20 H18   120.0
O3 C2 H20 H19   240.0
H18 C2 H20 H19   120.0